Stab-Wound Mouse Model for Studying Hemorrhage and Inflammation in Traumatic Brain Injury

Summary

Simplified traumatic brain injury (TBI) models have facilitated the development of therapeutic approaches. This protocol outlines the creation of a stab-wound mouse cortex using needles, enabling the analysis of hemorrhage and inflammation. The stab-wound TBI mouse model offers the advantage of being performed without requiring specialized equipment.

Abstract

Traumatic brain injury (TBI) results from physical damage, often caused by accidents or sports-related incidents. The causes of TBI are diverse, including concussions, brain contusions, hematomas, and skull fractures. To replicate these different causes, various TBI mouse models have been developed using distinct protocols. Physical brain injury leads to both primary and secondary brain injuries, which exacerbate neuronal loss. Primary injury occurs immediately after the damage, often due to hemorrhage, and subsequently triggers secondary injuries, including inflammation around the lesion. Developing a TBI model suitable for assessing hemorrhage extension and inflammatory severity is therefore crucial. This protocol introduces a method for mimicking penetrating brain injury, referred to as the stab-wound TBI mouse model, to study mechanisms of hemorrhage, inflammation, and neuronal loss associated with TBI pathology. This model is created by puncturing the skull and brain with needles and is simple to execute without the need for specialized experimental equipment. Additionally, the minor injury inflicted on the mouse cerebral cortex using a needle does not affect the animal's behavior post-surgery. This feature allows researchers to study the localized effects of brain injury without concerns about broader behavioral consequences. Sample data from stab-wounded mouse cerebral cortices demonstrate the model's effectiveness in assessing blood leakage into the parenchyma, glial activation, and inflammatory cytokine production. Furthermore, this protocol facilitates the evaluation of blood coagulants and anti-inflammatory compounds, aiding in the development of therapeutic agents for TBI.

Introduction

Traumatic brain injury (TBI) is caused by physical damage, often resulting from accidents, including traffic accidents and fall accidents. TBI is classified into two types: penetrating brain injury, which occurs when a sharp object perforates the skull as well as the brain, and closed brain injury, which is caused by violent shaking of the brain inside without a break in the skull¹.

The causes of TBI are very diverse, including concussions, brain contusions, hematomas, and skull fractures; therefore, TBI mouse models have been developed using various protocols to replicate these different causes. For example, a repetitive concussive TBI model involves brain shaking, where mice are stuck several times using an electromagnetically controlled rubber impactor². Additionally, in the weight-drop TBI model, a strong external force is exerted on the head by a standardized weight-drop device, causing focal blunt injury with an intact skull³. Furthermore, the stab-wound TBI model is prepared by puncturing the skull and brain using a needle⁴ (Figure 1A). Since several TBI models have been developed, it is important to choose a model based on the specific pathology that needs to be observed.

Brain injury caused by physical damage leads to primary and secondary brain injuries, which further exacerbate neuronal loss. Primary injury occurs immediately after the damage, resulting from the breakdown of the blood-brain barrier (BBB), hemorrhage, and hematoma. Therefore, minimizing hemorrhage and hematoma expansion is crucial, as these factors can exacerbate the severity of TBI symptoms. Secondary injury is triggered by intraparenchymal blood components, which subsequently lead to inflammation around the lesion⁵. The prognosis after brain injury depends on the inflammatory dynamics; therefore, it is crucial to rapidly mitigate both primary and secondary injuries for a favorable prognosis^6,7,8.

The BBB is composed of pericytes, tight junctions between endothelial cells, and the endfeet of astrocytes, which work together to restrict the leakage of substances from the blood vessels in healthy brains⁹. In the presented stab-wound system, the BBB is physically disrupted. Common methods for evaluating the BBB integrity include staining for immunoglobulin G (IgG) and assessing the leakage of fluorescence tracers, such as Evans blue and dextran^10,11. IgG staining labels blood components that leak from the lesion site and deposit in the brain. As the BBB recovers, leakage of blood components into the brain decreases, and these deposits are gradually degraded. Therefore, IgG staining is used to assess the extent of BBB recovery after brain injury. Additionally, the level of leakage of intravenously administered tracer into the brain parenchyma reflects the recovery of BBB. This method provides a clearer evaluation of the BBB dynamics, as tracer leakage directly indicates the transition of blood components from the bloodstream to the brain parenchyma. Furthermore, minimizing the hemorrhage leads to a milder primary injury, which is supported by prompt blood coagulation and timely fibrinolysis. Therefore, quantifying the expression of blood coagulation and fibrinolysis regulators is an effective way to analyze this process. Regarding the molecular mechanism underlying coagulation, hemorrhage after brain injury is stopped by fibrin formation. Subsequently, the fibrin-rich thrombus is degraded by tissue plasminogen activator (tPA) and urokinase plasminogen activator (uPA). In the stab-wound TBI mouse model, fibrin formation peaks on 1 day after the injury and reduces thereafter¹⁰. Thus, the recovery level of the BBB can be predicted by quantifying blood components and tracer extravasation into the brain parenchyma, as well as the expression of blood coagulation factors.

Quantification methods for inflammation in the secondary injury process include glial activation and inflammatory cytokine expression. Prolonged inflammation is mainly induced by excessive microglia and astrocyte accumulation around the lesion site. For example, in a stab-wound TBI model, stab-wounds stimulate the reactivation of glial cells around the lesion to remove the cell debris and blood components. This glial reactivation typically peaks 3 days after the stab-wound^12,13. In addition to their phagocytosis function, reactivated glial cells secrete excessive inflammatory cytokines, resulting in neuronal loss around the lesion¹⁴. It has been reported that the attenuation of glial inflammation contributes to a favorable prognosis after brain injury^12,14. Determining the level of inflammation is useful for evaluating the severity and prognosis. Therefore, it is essential to develop a TBI model suitable for assessing hemorrhage extension and inflammatory severity. This study introduces a stab-wound mouse model that mimics penetrating brain injury, with the aim of studying the mechanisms of hemorrhage, inflammation, and neuronal loss in TBI pathology.

Protocol

All animal care protocols were approved by the Institutional Animal Care and Use Committee of Ochanomizu University, Japan, and were performed in accordance with the guidelines established by the Ministry of Education, Science, and Culture in Japan. Six-week-old adult C57BL/6J female mice (20-25 g) were used; however, this protocol can be applied to other mouse strains, including ICR. All mice were provided ad libitum access to food and water in a clean environment. Details of the reagents and equipment used are listed in the Table of Materials.

1. Stab-wound surgery to the cerebral cortex

1. Preparation of reagents
   NOTE: The anesthetic protocol is similar to that previously described¹⁵. If the animal facility recommends a specific anesthetic, please follow their instructions. It has been previously confirmed that pentobarbital sodium is effective for stab-wound surgery in the cerebral cortex^4,13,16,17.
   1. Combination anesthetic MMB: Dissolve 1.875 mL of medetomidine, 2.0 mL of midazolam, and 2.5 mL of butorphanol tartrate in 18.625 mL of phosphate-buffered saline (PBS) to create a total volume of 25 mL. This mixture will have a concentration of 75 mg/L medetomidine, 400 mg/L midazolam, and 500 mg/L butorphanol tartrate mixture. Store at 4 °C for up to 8 weeks prior to use.
   2. Anesthesia antagonist: Dissolve 150 μL of atipamezole hydrochloride in 9.85 mL of PBS to create a total volume of 10 mL, with a concentration of 75 mg/L atipamezole hydrochloride. Store at 4 °C, protected from light, for up to 8 weeks prior to use.
2. Surgery procedure
   1. Mouse anesthesia: Temporarily anesthetize the mice using an isoflurane inhalation solution-soaked paper until they fall asleep. Then, inject 100 μL/kg combination anesthetic MMB intraperitoneal using a 1-mL syringe with a 27 G x 3/4" needle. After 3-5 min, confirm the anesthesia effectiveness by performing a toe pinch and checking the righting reflex. If the mouse responds, administer an additional 50 μL of combination anesthetic MMB.
      NOTE: Ensure to pay close attention not to give an overdose of anesthesia when using isoflurane inhalation solution.
   2. Place the mouse on its ventral side into a paper towel. After the transfer, reconfirm the mouse is still anesthetized with a toe pinch.
   3. Sterilize the fur on the back of the mouse's head with 70% ethanol using a cotton swab. Grasp the occipital skin with blunt forceps and make a 1.0-1.5 mm-wide incision to expose the occipital bone without damaging the skull or any organ. Gently and slowly open the incision to observe the boundary between the cerebral cortex and cerebellum through the skull (Figure 1B).
      NOTE: Ensure no damage occurs to the skull or brain for the no wound mouse.
   4. Mouse craniotomy: Create a small hole in the right hemisphere of the occipital bone using a 19 G x 1•1/2" needle. Gently rotate the needle to make an insertion point for stab-wound needling, taking care not to damage the brain parenchyma. The hole should be positioned at the midpoint of the right hemisphere and on the border between the cerebral cortex and cerebellum (Figure 1B). This hole serves as a guide for the insertion of the stab-wound needle in the subsequent step.
   5. Stab-wound: Insert a 27 G x 3/4" needle from the insertion point and stab the cerebral cortex along the rostrocaudal axis (Figure 1B,C). The needle is inserted until it contacts the front of the skull, then gently withdrawn. The appropriate depth is one where the needle can be seen through the surface of the cerebral cortex. The left side of the cerebral cortex is used as the undamaged control.
   6. Suture the skin incision using a nylon 3-0 suture with a 1/2 round needle.
      NOTE: There is no issue if the mouse removes the suture after awaking up from anesthesia.
   7. Administer the same amount of the anesthesia antagonist intraperitoneally as the combination anesthetic MMB. The mouse should be able to walk within 8-16 h after the anesthesia antagonist injection.

2. Assessment of hemorrhage and recovery from BBB breakdown

1. Immunoenzymatic staining of a stab-wounded brain section for mouse IgG leakage
   NOTE: Here, slide-mounted frozen brain sections were used. Free-floating frozen brain sections are also suitable for this protocol.
   1. Mouse anesthesia: Induce anesthesia by placing the mouse near an isoflurane inhalation solution-soaked paper until it falls asleep. Then, immediately administer 100 μL/kg combination anesthetic MMB intraperitoneally. Confirm the effect of anesthesia with a toe pinch and righting reflex.
      NOTE: If the dissection is performed within 1 h after the stab-wound, additional anesthesia is not necessary, as the mouse will still be under the effects of the initial anesthesia.
   2. Place the mouse on its back and pin both arms and feet onto the dissection board.
   3. Mouse thoracotomy: Grasp the abdominal skin using blunt forceps and make a 1.0-1.5 cm incision through the skin and peritoneum to expose the ribcage. Carefully open the ribcage with scissors while avoiding damage to the heart to expose it for cardiac perfusion.
   4. Cardiac perfusion fixation: Prepare a peristaltic perfusion pump and attach a tube with a 19 G x 1•1/2" needle at one end. Fill the tube with PBS by turning on the pump before use. Then, while the pump is running, insert the needle tip into the left ventricle and secure it with forceps. Make a 0.5-1.0 mm incision in the right atrium. Perfuse the mouse¹⁸ at a rate of 4-6 mL/min for 5 min with at least 20 mL of PBS to remove the blood.
   5. Stop the pump and transfer the tube to a solution of 4% paraformaldehyde (PFA) in PBS. Restart the pump at a rate of 4-6 mL/min for 5 min with at least 20 mL of 4% PFA in PBS for fixation¹⁸.
      NOTE: If the pump is not available, it is also possible to use a 50 mL syringe with a 19 G x 1•1/2" needle for perfusion.
   6. Brain dissection: Place the mouse on its ventral side on the dissection board and expose the skull by making an incision through the midline of the skin from the occipital area to the nose. Carefully expose the brain completely by removing the skull with scissors, taking care not to damage the brain. Lift the brain with curved forceps and transfer it to a 15-mL tube filled with 10 mL of 4% PFA in PBS.
   7. Incubate the dissected brain overnight in the 4% PFA in PBS at 4 °C for complete fixation. Following this, incubate the brain overnight in 10 mL of 15% sucrose in PBS and transfer it to 10 mL of 30% sucrose in PBS for an additional day on a seesaw shaker. This gradual sucrose replacement helps to prevent tissue damage from ice when the brain is later stored in a freezer.
   8. Brain embedding: Embed the brain coronally in an embedding medium within a tissue embedding mold and then freeze using 2-methylbutane with dry ice¹⁹.
   9. Frozen brain sections: Using a cryostat, mount serial coronal sections (20 μm-thick) of the embedded brain on a positive-charged slide glass. The brain sections are air-dried completely at room temperature overnight and stored in a -80 °C freezer.
   10. Blocking buffer preparation: Mix 10% newborn calf serum, 30 mg/mL bovine albumin, 10 mg/mL glycine, and 0.4% Triton X-100 in TBS to create the blocking buffer. Store at 4 °C for up to 2 weeks prior to use.
   11. Mouse IgG staining: After the stab-wounded cerebral cortex sections are air-dried at room temperature for 1 h, post-fix them with 500 μL of 4% PFA per slide for 30 min. Then, wash the section with PBS (500 μL/slide) for 5 min, followed by two washes with Tris-buffered saline (TBS, 500 μL/slide) for 5 min each.
       NOTE: Perform all procedures in a moisturizing box to prevent the buffers from evaporating.
   12. Quench endogenous enzyme activity in sections with 10% methanol and 3% hydrogen peroxide in TBS for 5 min, followed by two washes with Tris-buffered saline (TBS, 500 μL/slide) for 5 min each.
   13. Perform blocking using a blocking buffer (500 μL/slide) for 1 h at room temperature to prevent non-specific binding of the antibody. Then, incubate the sections with a biotin-conjugated mouse IgG antibody (1:300 dilution with the blocking buffer, 300 μL/slide) for 1 h at room temperature.
   14. While incubating with the mouse IgG antibody, prepare the mixture of 1 μL of Reagent A and 1 μL of Reagent B from the avidin/biotin-based peroxidase system kit in 300 μL of the blocking buffer. Incubate this mixture for 30 min at room temperature before use. After the mouse IgG antibody incubation is complete, wash the sections with TBS for 5 min, three times. Then, incubate the sections with the prepared mixture of Reagent A and B (300 μL/slide) for 1 h at room temperature.
   15. Wash the sections with 0.1 M Tris-HCl pH 8.0 for 5 min, three times, over the course of 1 h. Then, develop color using 0.05% 3,3'-diaminobenzidine (DAB) in 0.05% hydrogen peroxide-added 0.1 M Tris-HCl pH 8.0 (500 μL/slide) for 5 min to 1 h (Figure 2A). Observe under a microscope for color change before stopping the reaction.
   16. Wash the sections with 0.1 M Tris-HCl pH 8.0 for 5 min three times, and air dry the sections for 15 min. Thereafter, dehydrate the sections by immersing them in 95% ethanol for 2 min twice, followed by 100% ethanol for 2 min, twice. Clear the sections in xylene for 5 min twice. Coverslip the sections using a water-insoluble mounting medium and allow them to dry.
   17. Analysis of mouse IgG staining intensity: Capture images of the sections using a microscope with a 20x objective.
   18. Using ImageJ software, quantify the staining intensity by measuring the mean gray values in five randomly selected fields (8 × 8 μm² for each) from immunoenzymatically stained regions in each section. Normalize the staining intensity using the mean gray value from each contralateral; there is no wounded region as a background correction. Calculate the average of the normalized mean gray values from the five fields to determine the mean gray value of mouse IgG staining for each section.
2. Assessment of Evans blue leakage into the brain parenchyma
   NOTE: Evans blue protocol is similar to the method previously described¹¹. Fluorescein isothiocyanate (FITC)-labeled dextran also works for recovery from BBB breakdown¹⁰.
   1. Evans blue injection: Administer 2% Evans blue in PBS (3 mL/kg) to the stab-wounded mouse through the tail vein 1 h before dissection.
   2. Fresh brain extraction: 1 h after Evans blue administration, perfuse the mouse with PBS as described in steps 2.1.1-2.1.4. Then, dissect and slice the fresh brain coronally into 1 mm-thick sections using a brain slicer. Select four slices and cut out brain pieces (1 mm² square, each) that include the stab-wound region or intact regions in the no-wound cerebral cortex, according to the graph paper (Figure 1D).
   3. Evans blue quantification: Collect the four brain pieces in a 1.5 mL tube and homogenize them with 200 μL of trichloroacetic acid using a tissue grinder. Centrifuge the homogenate at 10,000 x g at 4 °C for 20 min. Then, collect the supernatant with a pipette and dilute it with 600 μL of ethanol. Prepare a standard curve of Evans blue, ranging from 0-1.0 ng/mL, to quantify its concentration. Measure the fluorescence intensity at 680 nm with an excitation wavelength of 620 nm using a plate reader.

3. Assessment of inflammation level in the brain after stab-wound

1. Immunoenzymatic staining of stab-wounded brain section for glial cells
   1. Preparation of the brain sections: Make the brain sections-mounted slide glasses as described in steps 2.1.1-2.1.9.
   2. Glial staining: After air-drying the stab-wounded cerebral cortex sections for 1 h, fix the sections again with 4% PFA (500 μL/slide) for 30 min. Then, wash the sections with PBS (500 μL/slide) for 5 min, followed by two washes with TBS (500 μL/slide) for 5 min each.
   3. Quench endogenous enzyme activity in sections with 10% methanol and 3% hydrogen peroxide in TBS for 5 min, followed by two washes with Tris-buffered saline (TBS, 500 μL/slide) for 5 min each.
   4. Perform blocking using a blocking buffer (500 μL/slide) for 1 h at room temperature to prevent non-specific binding of the antibody.
   5. Incubate the sections overnight with the primary antibody (300 μL/slide). Use the following dilutions for the primary antibody: 1:3,000 dilution for Iba1, and 1:1,000 dilution for GFAP, diluted in the blocking buffer.
   6. Wash the section three times with TBS for 5 min each. Then, incubate with the biotin-conjugated secondary antibody (1:300 dilution with the blocking buffer, 300 μL/slide) for 1 h at room temperature.
   7. While incubating with the secondary antibody, prepare the mixture of 1 μL of Reagent A and 1 μL of Reagent B from the avidin/biotin-based peroxidase system kit in 300 μL of the blocking buffer. Then incubate the mixture at room temperature for 30 min before use.
   8. After the secondary antibody incubation is complete, wash the sections three times with TBS for 5 min each, and incubate the sections with the prepared mixture of Reagent A and B (300 μL/slide) for 1 h at room temperature.
   9. Wash the sections with 0.1 M Tris-HCl pH 8.0 for 5 min, three times, over the course of 1 h. Then, develop color using 0.05% DAB in 0.05% hydrogen peroxide-added 0.1 M Tris-HCl pH 8.0 (500 μL/slide) for 30 min to 3 h. Observe under a microscope for color change before stopping the reaction.
   10. Wash the sections with 0.1 M Tris-HCl pH 8.0 for 5 min three times, and air dry the sections for 15 min. After that, dehydrate the sections by immersing them in 95% ethanol for 2 min twice, followed by 100% ethanol for 2 min, twice. Clear the sections in xylene for 5 min twice. Coverslip the sections using a water-insoluble mounting medium and allow them to dry. Capture the section images using the microscope with an objective of 20x.
2. Immunofluorescent staining of stab-wounded brain section for glial cells
   1. Preparation of the brain sections: Make the brain sections-mounted slide glasses as described in steps 2.1.1-2.1.9.
   2. Glial staining: After air-drying the stab-wounded cerebral cortex sections for 1 h, fix the sections again with 4% PFA (500 μL/slide) for 30 min. Then, wash the sections with PBS (500 μL/slide) for 5 min, followed by two washes with TBS (500 μL/slide) for 5 min each. Perform blocking using a blocking buffer (500 μL/slide) for 1 h at room temperature to prevent non-specific binding of the antibody.
   3. Incubate the sections overnight with the primary antibody (300 μL/slide). Use the following dilutions for the primary antibody: 1:3,000 dilution for Iba1, and 1:1,000 dilution for GFAP, diluted in blocking buffer.
   4. Wash the section three times with TBS for 5 min each. Then, incubate with the fluorescent-conjugated secondary antibody (1:300 dilution with the blocking buffer, 300 μL/slide) for 1 h at room temperature.
   5. Wash the sections three times with TBS for 5 min each and incubate the sections with 0.4 μg/mL DAPI solution in TBS (500 μL/slide) for 5 min at room temperature.
   6. Wash the sections with TBS (500 μL/slide) for 5 min, and with distilled water (500 μL/slide) for 5 min. After air drying the sections for 15 min, coverslip them with a water-based mounting medium and allow them to dry. Capture the section images using a confocal microscope with a 20x objective.
3. Real-time qPCR for glial cell markers and inflammatory cytokines
   NOTE: The primer sequences^16,20,21,22 used in the presented protocol are listed in Table 1.
   1. Fresh brain tissue preparation: Perfuse the mouse with PBS as described in steps 2.1.1-2.1.4. Then, extract and slice the fresh brain coronally into 1 mm-thick sections using a brain slicer. Select four slices and cut out brain pieces (1 mm² square, each) that include the stab-wound region or intact regions on the contralateral side of the cerebral cortex, according to the graph paper. Determine the region to cut out, which includes the lesion at the center (Figure 1D).
   2. RNA extraction: Collect the four brain pieces in a 1.5 mL tube and homogenize them with 1 mL of TRIzol reagent by pipetting. Incubate the mixture for 5 min at room temperature. Then, add 200 μL of chloroform, vortex well, and incubate for an additional 2 min at room temperature. Centrifuge the mixture at 12,000 x g for 15 min at 4 °C. Carefully transfer the upper, clear layer into a new 1.5 mL tube, avoiding any white precipitates, which contain DNA and proteins.
   3. Add 500 μL of isopropanol to the collected upper layer, mix well, and incubate for 10 min at room temperature. After centrifugation at 12,000 x g for 10 min at 4 °C, remove the supernatant and add 1 mL of 70% ethanol to wash the RNA pellet. Centrifuge at 7,500 x g for 5 min at 4 °C, remove the supernatant completely, and air dry the pellet for 10 min. Dissolve the RNA pellet in 15 μL of RNase-free water and denature the RNA for 10 min at 55°C.
   4. Measure the RNA concentration using a microvolume spectrophotometer. Store the RNA at -80 °C immediately.
   5. cDNA synthesis: For cDNA synthesis, use a commercially available DNA synthesis kit. Prepare a total of 10 μL of Reaction buffer in a 1.5 μL tube for each sample, which includes 2 μL of 5 x RT Buffer, 0.5 μL of RT Enzyme Mix, 0.5 μL of Primer Mix, 1 μg of RNA, and nuclease-free water. Incubate at 37 °C for 15 min for the reverse transcription reaction and at 98°C for 5 min for the enzyme inactivation reaction. Then, add 90 μL of nuclease-free water into the buffer and mix well. Store the cDNA solution at -20°C.
   6. Quantification of RNA expression: For real-time qPCR analysis, use a commercially available qPCR master mix kit. Prepare the Mix solution for each sample by combining 5 μL of KOD SYBR qPCR Mix, 0.4 μL of 5 μM forward primer, 0.4 μL of 5 μM reverse primer, and 0.2 μL of 50 x ROX in 2 μL of nuclease-free water.
   7. Make a mixture of 2 μL of cDNA solution and 8 μL of Mix solution in an 8-strip tube, mix well, and spin down.
   8. Initiate the PCR reaction with the following cycling conditions: 98 °C for 2 min, followed by 40 cycles of 98°C for 10 s, 60°C for 10 s, and 68°C for 30 s. Perform the Melting/Dissociation Curve Analysis step using a real-time qPCR machine.
   9. mRNA expression analysis: Analyze mRNA expression level using the 2-Delta-Delta-Ct method, which is performed by normalization with a housekeeping gene, Gapdh, then with that of the contralateral side²³.

Results

To analyze recovery from BBB breakdown, hemorrhage level in the stab-wounded cerebral cortices was assessed by measuring the extravasation level of serum IgG at 1, 3, 5, and 7 days after brain injury. The mouse IgG staining images revealed blood leakage and deposition in the cerebral cortices following brain injury. This was reduced after more than 7 days, as the BBB recovered, and the IgG protein degraded (Figure 2B). IgG extravasation levels were quantified by measuring the intensity of Ig...

Discussion

Here, a protocol for creating a TBI mouse model using needles was introduced. This protocol allows for a quantitative assessment of recovery from the breakdown of the BBB and inflammation after brain injury using histological and molecular biological approaches. Alternative protocols, such as the repetitive concussive TBI model and weight-drop TBI model, can also be used to analyze BBB breakdown and inflammation. These models replicate TBI pathology under controlled conditions, including specific parameters for impact st...

Materials

Name	Company	Catalog Number	Comments
19 G x 1•1/2" needle	TERUMO	NN-1938R
27 G x 3/4" needle	TERUMO	NN-2719S
anti-GFAP antibody	Sigma-Aldrich	G9269
anti-Iba1 antibody	Wako	019-19741
Atipamezole Hydrochloride	Nippon Zenyaku Kogyo		Product name: Antisedan
Biotin-conjugated mouse IgG antibody	Vector Laboratories	BA-9200
Biotin-conjugated rabbit IgG antibody	Vector Laboratories	BA-1000
Bovine albumin	Nacalai tesque	01860-07
Brain Slicer	Visikol	BSLM-2
Butorphanol Tartrate	Meiji Animal Health		Product name: Vetorphale 5 mg
Confocal microscope	Zeiss	LSM700
Cryostat	Leica	CM1520
DAB	Sigma-Aldrich	D5637-1G
DAPI	Roche	10236276001
Evans blue	Wako	056-04061
Fluorescent-conjugated rabbit IgG antibody	Invitrogen	A-21206
Fluoromount-G	Invitrogen	4958-02	Water-based mounting medium
Isoflurane Inhalation Solution	Viatris	v002139
KOD SYBR qPCR Mix	TOYOBO	QKD-201	qPCR master mix kit
Medetomidine	Nippon Zenyaku Kogyo		Product name: Domitor
Microscope	Olympus	FSX100
Microvolume spectrophotometer	ThermoFisher Scientific	NanoDrop One
Midazolam 10 mg/2 mL	Sandoz	1124401A1060
MOUNT QUICK	Daido Sangyo	DM01	Water insoluble mounting medium
Newborn calf serum	Gibco	16010159
O.C.T. compound	Sakura Finetek Japan	45833	Embedding medium
Peel-A-Way, Truncated 22 mm Square Top	Ted Pella	27118	Tissue embedding mold
Peristaltic perfusion pump	ATTO	SJ-1211
Plate reader	Fisher Scientific	Cytation 3
Real-time qPCR machine	ThermoFisher Scientific	StepOne Plus
ReverTra Ace qPCR RT Kit	TOYOBO	FSQ-101	cDNA synthesis kit
Superfrost Plus Slide Glass	Fisher Scientific	12-550-15	Positive-charged slide glass
Suture with needle	Alfresa	HT2003NA75-KF2
TRIzol Reagent	Invitrogen	15596026
VECTASTAIN ABC Standard Kit	Vector Laboratories	PK-4000	Avidin/biotin-based peroxidase system kit