עבודה זו נתמכה על ידי מענקים מהקרן הלאומית הבלגית לfi המדעי ג המחקר (FNRS), האטרקציה הבינאוניברסיטאי הפולנים תכנית הבלגית המדע ומדיניות &quot;Communauté Française דה Belgique-Actions דה Recherches Concertées&quot; לFC, מהקרן הלאומית למדע בירושלים ( ISF) לMM (גרנט # 1311-1312), ולNM (גרנט # 1312-1312).

<ol>
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Exp. Bot. 58, 377 (2007).</li><li>Locatelli, F., Vannini, C., Magnani, E., Coraggio, I., Bracale, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Efficiency+of+transient+transformation+in+tobacco+protoplasts+is+independent+of+plasmid+amount.">Efficiency of transient transformation in tobacco protoplasts is independent of plasmid amount.</a> Plant Cell Reports. 21, 865-871 (2003).</li><li>Hosy, E., Duby, G., V&#233;ry, A. A., Costa, A., Sentenac, H., Thibaud, J. B. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+procedure+for+localisation+and+electrophysiological+characterisation+of+ion+channels+heterologously+expressed+in+a+plant+context.">A procedure for localisation and electrophysiological characterisation of ion channels heterologously expressed in a plant context.</a> Plant Methods. 19, (2005).</li><li>Shoseyov, O., Posen, Y., Grynspan, F. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Human+Recombinant+Type+I+Collagen+Produced+in+Plants.">Human Recombinant Type I Collagen Produced in Plants.</a> Tissue Eng Part A. 19, 1527-1533 (2013).</li></ol>

We have nothing to disclose.

מתואר כאן הוא תהליך פשוט ויעיל מאוד למדידת f P של protoplasts מפעל המבודד, החלים באופן עקרוני גם לתאים כדוריים אחרים, למשל., ביציות צפרדע 11. שיטה זו מבוססת על מדידת f P בתגובה לאתגר האוסמוטי לתא. בניגוד לשיטות האחרות המבוססות על גישה זו, עם זאת, השינוי של פתרונות, כלומר, של osmolarity, אינו מיידי, אלא הדרגתי, במהלך זלוף אמבטיה קבוע, החל מהתמיסה איזוטונית, שבו תא בסיס הנפח הוקם. בנוסף, שיטה זו אינה כרוכה בפיפטה יניקה ולכן ממזערת את ההפרעה לprotoplasts. הגישה המוצגת כאן מאפשרת מדידות ממגוון רחב של protoplasts, מצמחים או רקמות שונים. ובכל זאת, בגלל החישובים המעורבים, ניתן לנתח תאים כדוריים בלבד. כמו כן, הבידוד האנזימטית של הprotoplasts הדואר וosmolarity של הפתרונות צריכים להיות מותאמים לתאי assayed (למשל, הבידוד האנזימטית של protoplasts mesophyll עגבניות לוקח בערך שעה, במידה ניכרת יותר מאשר במקרה של protoplasts ארבידופסיס). הבידוד של protoplasts mesophyll ארבידופסיס על פי הפרוטוקול המוצג הנו פשוט, מהיר ויעיל, מניב מספר גבוה של protoplasts. יש לציין, זו, בשילוב עם הרמות הנמוכה שלהם בסל f P ויעילות השינוי הגבוה שלהם (איור 8), הופכת אותם למערכת אטרקטיבית לביטוי התפקודי של AQPs, כדי לאפשר השוואות כמותיות של f P הנגרמת על ידי isoforms AQP שונה. כאשר מביע AQPs בprotoplasts אלה עם גן סמן (כגון GFP), אפשר בקלות לסנן protoplasts בתא הניסוי לfluorescing תאים לנתח. כדאי לבדוק אם מערכת זו היא alternativ קיימאדואר לביציות למנסים לאמוד AQPs אפילו ממקורות של בעלי חיים (יכולים לבוא לידי ביטוי, כי חלבונים מן החי פונקציונליים בתאי צמח הוכח כבר 17). באמצעות תכנית Fit f P, שני פרמטרים יותר, ליד f P, מתקבלים לתיאור של תגובות protoplast לאתגרי hypotonic: עיכוב, הזמן שבין תחילתו של שינוי בנפח ובתחילת זלוף אמבטיה, ומדרון Pf, שיעור השינוי בf P במהלך האתגר האוסמוטי (שתואר בפירוט ב11). לכל נתוני ניסוי להגדיר את ההליך הראוי הנפח צריכה להתבצע מספר פעמים, אספקת ערכים שונים החל (אתחול) עבור פרמטרים אלו, סופו של דבר בחירה בכושר עם השגיאה הנמוכה ביותר. תהליך מזעור שגיאה זו יכול להצטייר כמחפש העמק העמוק ביותר (&quot;מינימום גלובלי&quot;) בנוף של עמקים עם עומקים שונים, בין גברגבעות y, ומנסים לא להיתפס בעמק רדוד למדי (&quot;מינימום מקומי&quot;). שני סוגים של f P מתקבלים, f P בתחילת hypoosmotic מאוד נפיחות תגובה (&quot;P f הראשונית&quot;) וP f מחושבת בסוף 15 שניות של נפיחות, לספור מהסוף &#160; העיכוב (&quot;fi P f סופי&quot;). ההבדל בין שני נדון באופן מלא על ידי אל Moshelion et. 11, בכל קשורים למודלים 6 ניתחו. ישנם שני שלבים קריטיים בפרוטוקול: ראשון, בכושר טוב לקורס של ריכוז המחוון דיי, שני, בכושר טוב לקורס של נפח תא נפיחות הזמן הזמן.

ספיגת מים וזרימה על פני ממברנות תאים היא דרישה בסיסית לקיום מפעל בסלולרי ורמות הצמח כולו שניהם. ברמה התאית, aquaporins (AQPs) לשחק תפקיד מפתח בוויסות של המקדם האוסמוטי חדירות מים (ו P) של קרום תא 1-3. נכון להיום, כמה שיטות כבר מועסקות במדידת f P אנדוגני של protoplast מאיברי צמח שונים (כלומר שורשים, mesophyll, endodermis, וכו &#39;., נסקרו על ידי Chaumont et al. 4). אחת הגישות למדידת f P הוא לחשוף את protoplasts לאתגר האוסמוטי ולעקוב אחר שיעוריו הראשוניים של שינוי הנפח שלה (כלומר., השיפוע של השלב ליניארי המוקדם של שינוי הנפח). שתי שיטות שונות שתוארו לעיל מבוססת על גישה זו, שניהם מבוססות על חילופי מיידיים של פתרונות. הראשון מורכב מimmobilizing protoplast עם micropipette יניקה ומיתוג זרימת פתרון 5 ושנייה אחת של העברת protoplast מפתרון אחד למשנהו באמצעות micropipette 6. שיטות אלה יניקת micropipette וmicropipette העברה, המאפשרות רכישת תמונה בתחילת מאוד של חילופי פתרון מהירים (כדי ללכוד את השלב ליניארי המוקדם של שינוי נפח), ככל הנראה כרוכות לחץ פיזי לprotoplasts ודורשות ציוד מיוחד ומיקרומניפולציה מומחה. השיטה המתוארת כאן ממזערת ההפרעה לתאים, אינו כרוכה במיקרומניפולציה ומאפשר גזירה של f P כאשר זלוף האמבטיה אינו מיידי. לאחר עיכול אנזימטי, protoplasts, שקוע בתמיסה איזוטונית, הם משותקים בחלקו התחתון coverslip הזכוכית של פרספקס (aka Lucite או פרספקס) תא על ידי אינטראקציה תשלום. לאחר מכן, במהלך זלוף אמבטיה קבוע,התמיסה איזוטונית הוא הסמיק משם על ידי פתרון hypotonic יצירת אתגר hypoosmotic לprotoplasts. הנפיחות של protoplast היא וידאו מוקלט ולאחר מכן, על ידי שילוב של המידע על מהלך הזמן של זלוף האמבטיה וכמובן של נפיחות תא הזמן, f P נקבעה על ידי עיבוד תמונה ונהלים מתאימים עקום. היתרונות של שיטה זו הם שהניסוי הוא יעיל מאוד, כלומר אפשר לעקוב אחר כמה תאים בו זמנית בassay יחיד, ושהיא אינה דורשת ציוד מיוחד או כישורי מיקרומניפולציה מסוימים. מספר יישומים עבור שיטה זו הם אפשריים. לדוגמא, קביעת f P יליד מגוון של תאים מרקמות שונות וצמחים, כגון mesophyll וצרור תאי נדן מעלה ארבידופסיס 7, mesophyll עלה תירס או תאי שורש קליפת 8-10 או תאים בתרבית השעיה 11,12. בadditiב, ניתן לקבוע f P של תאי בעלי חיים כדוריים כגון תאי ביצית 11. דוגמא נוספת כרוכה בדיקה של פעילות AQP ידי ביטוי החולף של הגן שלהם בprotoplasts (או כל גנים אחרים אשר עשוי להשפיע עליהם, לדוגמה, הגנים של קינאז) ונחישות של תרומתם לf P; קשור 2-P f 13, למשל, ביטוי של עגבניות AQP SlTIP2; 2 בprotoplasts mesophyll ארבידופסיס על ידי שינוי PEG ונחישות SlTIP2. לבסוף, בחינה של ההשפעה על f P של מולקולות / חומרים שונים (תרופות, הורמונים, וכו &#39;) הוסיפה לפתרונות יכול גם להיבחן, למשל של חוסם AQP HgCl 2 7. הפרוטוקול הבא מתאר את הבידוד של protoplasts של התאים והנחישות של f P mesophyll ארבידופסיס.

<table border="0" cellpadding="0" cellspacing="0">
	<tbody>
		<tr height="48">
			<td height="48" style="height:48px;width:288px;">KCl</td>
			<td style="width:140px;">Chem-Impex International</td>
			<td style="width:159px;">01247-1</td>
			<td style="width:516px;"><a href="http://www.chemimpex.com/">http://www.chemimpex.com</a> 
			Any source, anal. grade</td>
		</tr>
		<tr height="26">
			<td height="26" style="height:26px;width:288px;">CaCl2</td>
			<td style="width:140px;">Merck</td>
			<td style="width:159px;">11718006</td>
			<td><a href="http://www.merck.com/">http://www.merck.com</a> 
			Any source, anal. grade</td>
		</tr>
		<tr height="47">
			<td height="47" style="height:47px;width:288px;">2-(N-morpholine)-ethanesulphonic acid (MES)</td>
			<td style="width:140px;">Sigma</td>
			<td style="width:159px;">15152002</td>
			<td>http://www.sigmaaldrich.com 
			Any source, anal. grade</td>
		</tr>
		<tr height="34">
			<td height="34" style="height:34px;width:288px;">D-Sorbitol</td>
			<td style="width:140px;">Sigma</td>
			<td style="width:159px;">18032003</td>
			<td>http://www.sigmaaldrich.com 
			Any source, anal. grade</td>
		</tr>
		<tr height="54">
			<td height="54" style="height:54px;width:288px;">Cellulase</td>
			<td style="width:140px;">Worthington, Lakewood, NJ, USA</td>
			<td style="width:159px;">LS002603</td>
			<td><a href="http://www.worthingtonbiochem.com/">http://www.worthingtonbiochem.com</a></td>
		</tr>
		<tr height="49">
			<td height="49" style="height:49px;width:288px;">Pectolyase</td>
			<td style="width:140px;">Karlan,&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160; Phonix, AZ, USA</td>
			<td style="width:159px;">8006</td>
			<td><a href="http://www.karlan.com/">http://www.karlan.com</a></td>
		</tr>
		<tr height="36">
			<td height="36" style="height:36px;width:288px;">Polyvinyl-pyrrolidone K 30 (PVP)</td>
			<td style="width:140px;">Sigma</td>
			<td style="width:159px;">81420</td>
			<td>http://www.sigmaaldrich.com</td>
		</tr>
		<tr height="33">
			<td height="33" style="height:33px;width:288px;"><a href="https://my.labguru.com/catalog/materials/216">Bovine Serum Albumin (BSA)</a></td>
			<td style="width:140px;">Sigma</td>
			<td style="width:159px;">A9418-5G</td>
			<td><a href="http://www.sigmaaldrich.com/">http://www.sigmaaldrich.com</a></td>
		</tr>
		<tr height="32">
			<td height="32" style="height:32px;width:288px;">Protamine sulphate</td>
			<td style="width:140px;">Sigma</td>
			<td style="width:159px;">P4380</td>
			<td>http://www.sigmaaldrich.com</td>
		</tr>
		<tr height="30">
			<td height="30" style="height:30px;width:288px;">Poly-L-Lysine</td>
			<td style="width:140px;">Sigma</td>
			<td style="width:159px;">P8920</td>
			<td>http://www.sigmaaldrich.com</td>
		</tr>
		<tr height="30">
			<td height="30" style="height:30px;width:288px;">Xylene cyanol</td>
			<td style="width:140px;">Sigma</td>
			<td style="width:159px;">X4126</td>
			<td>http://www.sigmaaldrich.com</td>
		</tr>
		<tr height="30">
			<td height="30" style="height:30px;width:288px;">Silicone vacuum grease heavy</td>
			<td style="width:140px;">Merck</td>
			<td style="width:159px;">107921</td>
			<td><a href="https://merck-chemicals.co.id/chemicals/silicone-high-vacuum-grease-heavy/MDA_CHEM-107921/p_LMib.s1Oxr4AAAEvXHg49in.?SecurePage=true&amp;SEO_ErrorPageOccurred=true&amp;attachments=CoA">https://merck-chemicals.co.id/chemicals/silicone-high-vacuum-grease-heavy/MDA_CHEM-107921/p_LMib.s1Oxr4AAAEvXHg49in.?SecurePage=true&#38;SEO_ErrorPageOccurred=true&#38;attachments=CoA</a></td>
		</tr>
		<tr height="32">
			<td height="32" style="height:32px;">Inverted microscope&#160;</td>
			<td>Nikon</td>
			<td>Eclipse TS100/TS100F</td>
			<td><a href="http://www.nikoninstruments.com/">http://www.nikoninstruments.com</a></td>
		</tr>
		<tr height="30">
			<td height="30" style="height:30px;">Peristaltic pump</td>
			<td>BIO-RAD</td>
			<td style="width:159px;">EP-1 Econo&#160;Pump</td>
			<td><a href="http://www.bio-rad.com/">http://www.bio-rad.com</a></td>
		</tr>
		<tr height="31">
			<td height="31" style="height:31px;">Grayscale digital camera</td>
			<td>Scion Corporation</td>
			<td style="width:159px;">CFW-1308M</td>
			<td><a href="http://www.scioncorp.com/">http://www.scioncorp.com</a></td>
		</tr>
		<tr height="22">
			<td height="22" style="height:22px;">CMU 1394 Camera Driver&#8217; plugin for ImageJ</td>
			<td style="width:140px;">Carnegie Mellon</td>
			<td></td>
			<td><a href="http://www.cs.cmu.edu/~iwan/1394/download.html">http://www.cs.cmu.edu/~iwan/1394/download.html</a> 
			Free software</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">ImageJ</td>
			<td style="width:140px;">NIH</td>
			<td></td>
			<td><a href="http://rsb.info.nih.gov/ij/">http://rsb.info.nih.gov/ij/</a> 
			Free software</td>
		</tr>
		<tr height="22">
			<td height="22" style="height:22px;">Econo Gradient Pump Fittings Kit</td>
			<td style="width:140px;">BIO-RAD</td>
			<td style="width:159px;">731-9006</td>
			<td><a href="http://www.bio-rad.com/">http://www.bio-rad.com</a></td>
		</tr>
		<tr height="22">
			<td height="22" style="height:22px;">Connectors, manifold</td>
			<td style="width:140px;">DirectMed</td>
			<td></td>
			<td><a href="http://directmed.com/main/Plastic-Medical-Tubing-Connectors.html?ACTION=S">http://directmed.com/main/Plastic-Medical-Tubing-Connectors.html?ACTION=S</a></td>
		</tr>
		<tr height="22">
			<td height="22" style="height:22px;">Burette infusion sets (columns)</td>
			<td style="width:140px;">Welford</td>
			<td style="width:159px;">IF-BR-001</td>
			<td>http://www.welfordmedical.com/content.php?id=61</td>
		</tr>
		<tr height="22">
			<td height="22" style="height:22px;">Tubing</td>
			<td style="width:140px;">TYGON</td>
			<td style="width:159px;">R-3603</td>
			<td><a href="http://www.usplastic.com/">http://www.usplastic.com</a></td>
		</tr>
		<tr height="22">
			<td height="22" style="height:22px;">Plexiglass slide etc.</td>
			<td style="width:140px;">Perspectiv</td>
			<td></td>
			<td><a href="http://www.perspectiv.co.il/index-en.html">http://www.perspectiv.co.il/index-en.html</a> 
			Our slide was custom-made, it does not appear on the web site but a copy can be remade to order as &#39;a copy of the slide already made for M. Moshelion&#39;.</td>
		</tr>
		<tr height="22">
			<td height="22" style="height:22px;">3M packaging Scotch tape 1&#39;&#39;, clear</td>
			<td style="width:140px;">Viking Industrial, UK</td>
			<td style="width:159px;">VKMONO25</td>
			<td><a href="http://www.vikingtapes.co.uk/c-428-vkmono-mono-filament-tape.aspx#.UuvqOftdy_8">http://www.vikingtapes.co.uk/c-428-vkmono-mono-filament-tape.aspx#.UuvqOftdy_8</a> 
			any clear adhesive tape (sellotape, etc.) is likely to be OK</td>
		</tr>
	</tbody>
</table>

measuring the osmotic water permeability coefficient (pf) of spherical cells: isolated plant protoplasts as an example

חקר מנגנוני רגולציה AQP הוא קריטי להבנה של יחסי מים בסלולריים ורמות הצמח כולו שניהם. מוצג כאן היא שיטה פשוטה ויעילה מאוד לקביעת מקדם חדירות מים האוסמוטי (ו P) בprotoplasts צמח, החלים באופן עקרוני גם לתאים כדוריים אחרים כגון ביציות צפרדע. הצעד הראשון של assay הוא הבידוד של protoplasts מרקמות הצמח של ריבית על ידי עיכול אנזימטי לתא עם תמיסה איזוטונית מתאימה. הצעד השני מורכב מassay אתגר האוסמוטי: protoplasts המשותק בחלקו התחתון של החדר מוגשים להתחלת זלוף מתמיד עם תמיסה איזוטונית ואחריו פתרון hypotonic. נפיחות התא היא וידאו מוקלט. בשלב השלישי, התמונות מעובדות מחובר להניב שינויי נפח, וכמובן של שינויי נפח הזמן מתואם עם מהלך השינוי בosmola הזמןטוהרתו של מדיום התא זלוף, באמצעות הליך ראוי עקומה נכתב Matlab (&#39;PfFit&#39;), כדי להניב f P.

Watch this Scientific Journal Video about Measuring the Osmotic Water Permeability Coefficient Pf of Spherical Cells: Isolated Plant Protoplasts as an Example at JoVE.com

Measuring the Osmotic Water Permeability Coefficient Pf of Spherical Cells: Isolated Plant Protoplasts as an Example

מדידה מקדם האוסמוטי חדירות מים (ו P) של תאים יכול לעזור להבין את מנגנוני הרגולציה של aquaporins (AQPs). נחישות f P בprotoplasts תא צמח הכדורי המוצג כאן כוללת בידוד protoplasts וניתוח מספרי של השיעור הראשון שלהם שינוי נפח כתוצאה מאתגר האוסמוטי במהלך זלוף אמבטיה הקבוע.

מדידת אוסמוטי המים החדירות מקדם (P<sub&gt; F</sub&gt;) של תאים כדוריים: Protoplasts צמח מבודד כדוגמה

Studying AQP regulation mechanisms is crucial for the understanding of water relations at both the cellular and the whole plant levels. Presented here is ...

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Measuring the Osmotic Water Permeability Coefficient (Pf) of Spherical Cells: Isolated Plant Protoplasts as an Example

15.9K Views.  The Hebrew University of Jerusalem.  מדידה מקדם האוסמוטי חדירות מים (ו P) של תאים יכול לעזור להבין את מנגנוני הרגולציה של aquaporins (AQPs). נחישות f P בprotoplasts תא צמח הכדורי המוצג כאן כוללת בידוד protoplasts וניתוח מספרי של השיעור הראשון שלהם שינוי נפח כתוצאה מאתגר האוסמוטי במהלך ?...

Video: Measuring the Osmotic Water Permeability Coefficient Pf of Spherical Cells: Isolated Plant Protoplasts as an Example

Osmotic Avoidance in Caenorhabditis elegans: Synaptic Function of Two Genes, Orthologues of Human NRXN1 and NLGN1, as Candidates for Autism

Neurexins and neuroligins are cell adhesion molecules present in excitatory and inhibitory synapses, and they are required for correct neuron network function1. These proteins are found at the presynaptic and postsynaptic membranes 2. Studies in mice indicate that neurexins and neurologins have an essential role in synaptic transmission 1. Recent reports have shown that altered neuronal connections during the development of the human nervous system could constitute the basis of the etiology of numerous cases of autism spectrum disorders 3.
Caenorhabditis elegans could be used as an experimental tool to facilitate the study of the functioning of synaptic components, because of its simplicity for laboratory experimentation, and given that its nervous system and synaptic wiring has been fully characterized. In C. elegans nrx-1 and nlg-1 genes are orthologous to human NRXN1 and NLGN1 genes which encode alpha-neurexin-1 and neuroligin-1 proteins, respectively. In humans and nematodes, the organization of neurexins and neuroligins is similar in respect to functional domains.
The head of the nematode contains the amphid, a sensory organ of the nematode, which mediates responses to different stimuli, including osmotic strength. The amphid is made of 12 sensory bipolar neurons with ciliated dendrites and one presynaptic terminal axon 4. Two of these neurons, named ASHR and ASHL are particularly important in osmotic sensory function, detecting water-soluble repellents with high osmotic strength 5. The dendrites of these two neurons lengthen to the tip of the mouth and the axons extend to the nerve ring, where they make synaptic connections with other neurons determining the behavioral response 6.
To evaluate the implications of neurexin and neuroligin in high osmotic strength avoidance, we show the different response of C. elegans mutants defective in nrx-1 and nlg-1 genes, using a method based on a 4M fructose ring 7. The behavioral phenotypes were confirmed using specific RNAi clones 8. In C. elegans, the dsRNA required to trigger RNAi can be administered by feeding 9. The delivery of dsRNA through food induces the RNAi interference of the gene of interest thus allowing the identification of genetic components and network pathways.

Osmotic Avoidance in Caenorhabditis elegans: Synaptic Function of Two Genes, Orthologues of Human NRXN1 and NLGN1, as Candidates for Autism

Neurexins and neuroligins are membrane-neuron adhesion proteins which perform essential roles in synaptic differentiation and transmission. Neuroligin deficient mutants of C. elegans are defective in detecting osmotic strength, but when they also contain a mutation in the gene coding neurexin, they recover the wild type phenotype.

הימנעות אוסמוטי ב Caenorhabditis elegans: Synaptic פונקציה של שני גנים, Orthologues של האדם NRXN1 ו NLGN1, כמו מועמדים אוטיזם

Neurexins and neuroligins are cell adhesion molecules present in excitatory and inhibitory synapses, and they are required for correct neuron network ...

Fluorescence Activated Cell Sorting of Plant Protoplasts

High-resolution, cell type-specific analysis of gene expression greatly enhances understanding of developmental regulation and responses to environmental stimuli in any multicellular organism. In situ hybridization and reporter gene visualization can to a limited extent be used to this end but for high resolution quantitative RT-PCR or high-throughput transcriptome-wide analysis the isolation of RNA from particular cell types is requisite. Cellular dissociation of tissue expressing a fluorescent protein marker in a specific cell type and subsequent Fluorescence Activated Cell Sorting (FACS) makes it possible to collect sufficient amounts of material for RNA extraction, cDNA synthesis/amplification and microarray analysis.
An extensive set of cell type-specific fluorescent reporter lines is available to the plant research community. In this case, two marker lines of the Arabidopsis thaliana root are used: PSCR::GFP (endodermis and quiescent center) and PWOX5::GFP (quiescent center). Large numbers (thousands) of seedlings are grown hydroponically or on agar plates and harvested to obtain enough root material for further analysis. Cellular dissociation of plant material is achieved by enzymatic digestion of the cell wall. This procedure makes use of high osmolarity-induced plasmolysis and commercially available cellulases, pectinases and hemicellulases to release protoplasts into solution.
FACS of GFP-positive cells makes use of the visualization of the green versus the red emission spectra of protoplasts excited by a 488 nm laser. GFP-positive protoplasts can be distinguished by their increased ratio of green to red emission. Protoplasts are typically sorted directly into RNA extraction buffer and stored for further processing at a later time.
This technique is revealed to be straightforward and practicable. Furthermore, it is shown that it can be used without difficulty to isolate sufficient numbers of cells for transcriptome analysis, even for very scarce cell types (e.g. quiescent center cells). Lastly, a growth setup for Arabidopsis seedlings is demonstrated that enables uncomplicated treatment of the plants prior to cell sorting (e.g. for the cell type-specific analysis of biotic or abiotic stress responses). Potential supplementary uses for FACS of plant protoplasts are discussed.

A method for isolating specific cell types from plant material is demonstrated. This technique employs transgenic marker lines expressing fluorescent proteins in particular cell types, cellular dissociation and Fluorescence Activated Cell Sorting. Additionally, a growth setup is established here that facilitates treatment of Arabidopsis thaliana seedlings prior to cell sorting.

מיון פלואורסצנטי תא פעיל של Protoplasts הצמח

High-resolution, cell type-specific analysis of gene expression greatly enhances understanding of developmental regulation and responses to environmental ...

Measuring the Bending Stiffness of Bacterial Cells Using an Optical Trap

We developed a protocol to measure the bending rigidity of filamentous rod-shaped bacteria. Forces are applied with an optical trap, a microscopic three-dimensional spring made of light that is formed when a high-intensity laser beam is focused to a very small spot by a microscope's objective lens. To bend a cell, we first bind live bacteria to a chemically-treated coverslip. As these cells grow, the middle of the cells remains bound to the coverslip but the growing ends are free of this restraint. By inducing filamentous growth with the drug cephalexin, we are able to identify cells in which one end of the cell was stuck to the surface while the other end remained unattached and susceptible to bending forces. A bending force is then applied with an optical trap by binding a polylysine-coated bead to the tip of a growing cell. Both the force and the displacement of the bead are recorded and the bending stiffness of the cell is the slope of this relationship.

We present a protocol for bending filamentous bacterial cells attached to a cover-slip surface with an optical trap to measure the cellular bending stiffness.

מדידת קשיחות כיפוף של תאים חיידקיים באמצעות מלכודת אופטית

We developed a protocol to measure the bending rigidity of filamentous rod-shaped bacteria. Forces are applied with an optical trap, a microscopic ...

Measuring the Kinetics of mRNA Transcription in Single Living Cells

The transcriptional activity of RNA polymerase II (Pol II) is a dynamic process and therefore measuring the kinetics of the transcriptional process in vivo is of importance. Pol II kinetics have been measured using biochemical or molecular methods.1-3 In recent years, with the development of new visualization methods, it has become possible to follow transcription as it occurs in real time in single living cells.4 Herein we describe how to perform analysis of Pol II elongation kinetics on a specific gene in living cells.5, 6 Using a cell line in which a specific gene locus (DNA), its mRNA product, and the final protein product can be fluorescently labeled and visualized in vivo, it is possible to detect the actual transcription of mRNAs on the gene of interest.7, 8 The mRNA is fluorescently tagged using the MS2 system for tagging mRNAs in vivo, where the 3'UTR of the mRNA transcripts contain 24 MS2 stem-loop repeats, which provide highly specific binding sites for the YFP-MS2 coat protein that labels the mRNA as it is transcribed.9 To monitor the kinetics of transcription we use the Fluorescence Recovery After Photobleaching (FRAP) method. By photobleaching the YFP-MS2-tagged nascent transcripts at the site of transcription and then following the recovery of this signal over time, we obtain the synthesis rate of the newly made mRNAs.5 In other words, YFP-MS2 fluorescence recovery reflects the generation of new MS2 stem-loops in the nascent transcripts and their binding by fluorescent free YFP-MS2 molecules entering from the surrounding nucleoplasm. The FRAP recovery curves are then analyzed using mathematical mechanistic models formalized by a series of differential equations, in order to retrieve the kinetic time parameters of transcription.

RNA polymerase II transcriptional kinetics are measured on specific genes in living cells. mRNAs transcribed from the gene of interest are fluorescently tagged and using Fluorescence Recovery After Photobleaching (FRAP) the in vivo kinetics of transcriptional elongation are obtained.

מדידת קינטיקה של שעתוק mRNA בתאים חיים יחיד

The transcriptional activity of RNA polymerase II (Pol II) is a dynamic process and therefore measuring the kinetics of the transcriptional process in ...

Characterizing Herbivore Resistance Mechanisms: Spittlebugs on Brachiaria spp. as an Example

Plants can resist herbivore damage through three broad mechanisms: antixenosis, antibiosis and tolerance1. Antixenosis is the degree to which the plant is avoided when the herbivore is able to select other plants2. Antibiosis is the degree to which the plant affects the fitness of the herbivore feeding on it1.Tolerance is the degree to which the plant can withstand or repair damage caused by the herbivore, without compromising the herbivore's growth and reproduction1. The durability of herbivore resistance in an agricultural setting depends to a great extent on the resistance mechanism favored during crop breeding efforts3.
We demonstrate a no-choice experiment designed to estimate the relative contributions of antibiosis and tolerance to spittlebug resistance in Brachiaria spp. Several species of African grasses of the genus Brachiaria are valuable forage and pasture plants in the Neotropics, but they can be severely challenged by several native species of spittlebugs (Hemiptera: Cercopidae)4.To assess their resistance to spittlebugs, plants are vegetatively-propagated by stem cuttings and allowed to grow for approximately one month, allowing the growth of superficial roots on which spittlebugs can feed. At that point, each test plant is individually challenged with six spittlebug eggs near hatching. Infestations are allowed to progress for one month before evaluating plant damage and insect survival. Scoring plant damage provides an estimate of tolerance while scoring insect survival provides an estimate of antibiosis. This protocol has facilitated our plant breeding objective to enhance spittlebug resistance in commercial brachiariagrases5.

Characterizing Herbivore Resistance Mechanisms: Spittlebugs on Brachiaria spp. as an Example

This video explains mechanisms of host plant resistance to herbivory and demonstrates a no-choice test that estimates the relative contributions of antibiosis and tolerance to spittlebug resistance in Brachiaria spp.

אפיון מנגנוני ההתנגדות אוכלי עשב: Spittlebugs על Brachiaria Spp. כדוגמה

Plants can resist herbivore damage through three broad mechanisms: antixenosis, antibiosis and tolerance1. Antixenosis is the degree to which the plant is ...

Multi-parameter Measurement of the Permeability Transition Pore Opening in Isolated Mouse Heart Mitochondria

The mitochondrial permeability transition pore (mtPTP) is a non specific channel that forms in the inner mitochondrial membrane to transport solutes with a molecular mass smaller than 1.5 kDa. Although the definitive molecular identity of the pore is still under debate, proteins such as cyclophilin D, VDAC and ANT contribute to mtPTP formation. While the involvement of mtPTP opening in cell death is well established1, accumulating evidence indicates that the mtPTP serves a physiologic role during mitochondrial Ca2+ homeostasis2, bioenergetics and redox signaling 3.
mtPTP opening is triggered by matrix Ca2+ but its activity can be modulated by several other factors such as oxidative stress, adenine nucleotide depletion, high concentrations of Pi, mitochondrial membrane depolarization or uncoupling, and long chain fatty acids4. In vitro, mtPTP opening can be achieved by increasing Ca2+ concentration inside the mitochondrial matrix through exogenous additions of Ca2+ (calcium retention capacity). When Ca2+ levels inside mitochondria reach a certain threshold, the mtPTP opens and facilitates Ca2+ release, dissipation of the proton motive force, membrane potential collapse and an increase in mitochondrial matrix volume (swelling) that ultimately leads to the rupture of the outer mitochondrial membrane and irreversible loss of organelle function.
Here we describe a fluorometric assay that allows for a comprehensive characterization of mtPTP opening in isolated mouse heart mitochondria. The assay involves the simultaneous measurement of 3 mitochondrial parameters that are altered when mtPTP opening occurs: mitochondrial Ca2+ handling (uptake and release, as measured by Ca2+ concentration in the assay medium), mitochondrial membrane potential, and mitochondrial volume. The dyes employed for Ca2+ measurement in the assay medium and mitochondrial membrane potential are Fura FF, a membrane impermeant, ratiometric indicator which undergoes a shift in the excitation wavelength in the presence of Ca2+, and JC-1, a cationic, ratiometric indicator which forms green monomers or red aggregates at low and high membrane potential, respectively. Changes in mitochondrial volume are measured by recording light scattering by the mitochondrial suspension. Since high-quality, functional mitochondria are required for the mtPTP opening assay, we also describe the steps necessary to obtain intact, highly coupled and functional isolated heart mitochondria.

A spectrofluorometric protocol for the measurement of the mitochondrial permeability transition pore opening in isolated mouse heart mitochondria is presented here. The assay involves the simultaneous measurement of mitochondria Ca2+ handling, mitochondrial membrane potential and mitochondrial volume. The procedure for obtaining high-quality and functional heart mitochondria is also described.

מדידת פרמטר-Multi של הפתיחה הנקבובית מעבר החדירות בלב עכבר מבודד המיטוכונדריה

The mitochondrial permeability transition pore (mtPTP) is a non specific channel that forms in the inner mitochondrial membrane to transport solutes with ...

Quantifying Single Microvessel Permeability in Isolated Blood-perfused Rat Lung Preparation

The isolated blood-perfused lung preparation is widely used to visualize and define signaling in single microvessels. By coupling this preparation with real time imaging, it becomes feasible to determine permeability changes in individual pulmonary microvessels. Herein we describe steps to isolate rat lungs and perfuse them with autologous blood. Then, we outline steps to infuse fluorophores or agents via a microcatheter into a small lung region. Using these procedures described, we determined permeability increases in rat lung microvessels in response to infusions of bacterial lipopolysaccharide. The data revealed that lipopolysaccharide increased fluid leak across both venular and capillary microvessel segments. Thus, this method makes it possible to compare permeability responses among vascular segments and thus, define any heterogeneity in the response. While commonly used methods to define lung permeability require postprocessing of lung tissue samples, the use of real time imaging obviates this requirement as evident from the present method. Thus, the isolated lung preparation combined with real time imaging offers several advantages over traditional methods to determine lung microvascular permeability, yet is a straightforward method to develop and implement.

The isolated blood-perfused lung preparation makes it feasible to visualize microvessel networks on the lung surface. Here we describe an approach to quantify permeability of single microvessels in isolated lungs using real time fluorescence imaging.

כימות יחיד כלי דם קטנים בחדירות מבודדת-perfused דם עכברוש ריאות הכנה

The isolated blood-perfused lung preparation is widely used to visualize and define signaling in single microvessels. By coupling this preparation with ...

The Infiltration-centrifugation Technique for Extraction of Apoplastic Fluid from Plant Leaves Using Phaseolus vulgaris as an Example

The apoplast is a distinct extracellular compartment in plant tissues that lies outside the plasma membrane and includes the cell wall. The apoplastic compartment of plant leaves is the site of several important biological processes, including cell wall formation, cellular nutrient and water uptake and export, plant-endophyte interactions and defence responses to pathogens. The infiltration-centrifugation method is well established as a robust technique for the analysis of the soluble apoplast composition of various plant species. The fluid obtained by this method is commonly known as apoplast washing fluid (AWF). The following protocol describes an optimized vacuum infiltration and centrifugation method for AWF extraction from Phaseolus vulgaris (French bean) cv. Tendergreen leaves. The limitations of this method and the optimization of the protocol for other plant species are discussed. Recovered AWF can be used in a wide range of downstream experiments that seek to characterize the composition of the apoplast and how it varies in response to plant species and genotype, plant development and environmental conditions, or to determine how microorganisms grow in apoplast fluid and respond to changes in its composition.

The Infiltration-centrifugation Technique for Extraction of Apoplastic Fluid from Plant Leaves Using Phaseolus vulgaris as an Example

This protocol details the optimized extraction of apoplast washing fluid from plant leaves, using French bean plants (Phaseolus vulgaris) as a model example.

טכניקת ההסתננות-צנטריפוגה להפקת Apoplastic נוזלים מצמח עלים שימוש<em&gt; Vulgaris Phaseolus</em&gt; כדוגמה

The apoplast is a distinct extracellular compartment in plant tissues that lies outside the plasma membrane and includes the cell wall. The apoplastic ...

Rapid Analysis of Circadian Phenotypes in Arabidopsis Protoplasts Transfected with a Luminescent Clock Reporter

The plant circadian clock allows the anticipation of daily changes to the environment. This anticipation aids the responses to temporally predictable biotic and abiotic stress. Conversely, disruption of circadian timekeeping severely compromises plant health and reduces agricultural crop yields. It is therefore imperative that we understand the intricate regulation of circadian rhythms in plants, including the factors that affect motion of the transcriptional clockwork itself.
Testing circadian defects in the model plant Arabidopsis thaliana (Arabidopsis) traditionally involves crossing specific mutant lines to a line rhythmically expressing firefly luciferase from a circadian clock gene promoter. This approach is laborious, time-consuming, and could be fruitless if a mutant has no circadian phenotype. The methodology presented here allows a rapid initial assessment of circadian phenotypes. Protoplasts derived from mutant and wild-type Arabidopsis are isolated, transfected with a rhythmically expressed luminescent reporter, and imaged under constant light conditions for 5 days. Luminescent traces will directly reveal whether the free-running period of mutant plants is different from wild-type plants. The advantage of the method is that any Arabidopsis line can efficiently be screened, without the need for generating a stably transgenic luminescent clock marker line in that mutant background.

The circadian clock regulates about a third of the Arabidopsis transcriptome, but the percentage of genes that feed back into timekeeping remains unknown. Here we visualize a method to rapidly assess circadian phenotypes in any mutant line of Arabidopsis using luminescent imaging of a circadian reporter transiently expressed in protoplasts.

ניתוח מהיר של פנוטיפים היממה ארבידופסיס פרוטופלאסט טרנספקציה עם כתבת שעון פלורסנט

The plant circadian clock allows the anticipation of daily changes to the environment. This anticipation aids the responses to temporally predictable ...

Analysis of Protein Import into Chloroplasts Isolated from Stressed Plants

Chloroplasts are organelles with many vital roles in plants, which include not only photosynthesis but numerous other metabolic and signaling functions. Furthermore, chloroplasts are critical for plant responses to various abiotic stresses, such as salinity and osmotic stresses. A chloroplast may contain up to ~3,000 different proteins, some of which are encoded by its own genome. However, the majority of chloroplast proteins are encoded in the nucleus and synthesized in the cytosol, and these proteins need to be imported into the chloroplast through translocons at the chloroplast envelope membranes. Recent studies have shown that the chloroplast protein import can be actively regulated by stress. To biochemically investigate such regulation of protein import under stress conditions, we developed the method described here as a quick and straightforward procedure that can easily be achieved in any laboratory. In this method, plants are grown under normal conditions and then exposed to stress conditions in liquid culture. Plant material is collected, and chloroplasts are then released by homogenization. The crude homogenate is separated by density gradient centrifugation, enabling isolation of the intact chloroplasts. Chloroplast yield is assessed by counting, and chloroplast intactness is checked under a microscope. For the protein import assays, purified chloroplasts are incubated with 35S radiolabeled in vitro translated precursor proteins, and time-course experiments are conducted to enable comparisons of import rates between genotypes under stress conditions. We present data generated using this method which show that the rate of protein import into chloroplasts from a regulatory mutant is specifically altered under osmotic stress conditions.

Here we describe a new method to study protein import into isolated chloroplasts under stress. The method is rapid and straightforward, and can be applied to study the consequences of different stress conditions for chloroplast protein import, and the corresponding regulatory mechanisms.

ניתוח של ייבוא ​​חלבון לתוך כלורופלסטים מבודדים מצמחים לחוצים

Chloroplasts are organelles with many vital roles in plants, which include not only photosynthesis but numerous other metabolic and signaling functions. ...