Name: immunohistochemical analysis in the rat central nervous system and peripheral lymph node tissue sections
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Description: Watch this Scientific Journal Video about Immunohistochemical Analysis in the Rat Central Nervous System and Peripheral Lymph Node Tissue Sections at JoVE.com

We thank Hans Lassmann and Jan Bauer for their guidance and support. We also thank Katalin Benedek for excellent technical assistance and Caroline Westerlund for critical and linguistic appraisal.
This study was supported by grants from Biogen Idec, the Wenner-Gren Foundation, the Swedish Research Council, the Swedish Association of Persons with Neurological Disabilities, Swedish Brain Foundation, the EU 6TH Framework EURATools (LSHG-CT-2005-019015) and Neuropromise (LSHM-CT-2005-018637). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

Ethical Statement 
Present study is performed in accordance with guidelines from the Swedish National Board for Laboratory Animals and the European Community Council Directive (86/609/EEC) under the ethical permits N338/09, N15/10 and N65/10, which were approved by the North Stockholm Animal Ethics Committee.
1. Tissue Preparation
<ol>
	<li>Perfusion &#38; fixation
	<ol>
		<li>Anesthetize the animal with isoflurane to perform transcardial perfusion via ...

<ol>
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Y., Sammons, R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Rapid+preparation+of+peroxidase:+anti-peroxidase+complexes+for+immunocytochemical+use.">Rapid preparation of peroxidase: anti-peroxidase complexes for immunocytochemical use.</a> Journal of immunological. 20, 317-324 (1978).</li><li>Faulk, W. P., Taylor, G. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=An+immunocolloid+method+for+the+electron+microscope.">An immunocolloid method for the electron microscope.</a> Immunochemistry. 8, 1081-1083 (1971).</li><li>Coons, A. H., Kaplan, M. 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R., Key, M. E., Kalra, K. L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Antigen+retrieval+in+formalin-fixed,+paraffin-embedded+tissues:+an+enhancement+method+for+immunohistochemical+staining+based+on+microwave+oven+heating+of+tissue+sections.">Antigen retrieval in formalin-fixed, paraffin-embedded tissues: an enhancement method for immunohistochemical staining based on microwave oven heating of tissue sections.</a> The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society. 39, 741-748 (1991).</li><li>Huang, S. N. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Immunohistochemical+demonstration+of+hepatitis+B+core+and+surface+antigens+in+paraffin+sections.">Immunohistochemical demonstration of hepatitis B core and surface antigens in paraffin sections.</a> Laboratory investigation; a journal of technical methods and pathology. 33, 88-95 (1975).</li><li>Shi, S. R., Cote, R. J., Taylor, C. R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Antigen+retrieval+immunohistochemistry:+past,+present,+and+future.">Antigen retrieval immunohistochemistry: past, present, and future.</a> The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society. 45, 327-343 (1997).</li><li>Taylor, C. R., Shi, S. R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Antigen+retrieval:+call+for+a+return+to+first+principles.">Antigen retrieval: call for a return to first principles.</a> Applied immunohistochemistry &amp; molecular morphology : AIMM / official publication of the Society for Applied Immunohistochemistry. 8, 173-174 (2000).</li><li>Kitamoto, T., Ogomori, K., Tateishi, J., Prusiner, S. B. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Formic+acid+pretreatment+enhances+immunostaining+of+cerebral+and+systemic+amyloids.">Formic acid pretreatment enhances immunostaining of cerebral and systemic amyloids.</a> Laboratory investigation; a journal of technical methods and pathology. 57, 230-236 (1987).</li><li>Nelson, P. N., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Monoclonal+antibodies.">Monoclonal antibodies.</a> Molecular pathology : MP. 53, 111-117 (2000).</li><li>Van der Loos, C. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> Immunoenzyme multiple staining methods. , (1999).</li><li>Elias, J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> Immunohistopathology. A practical approach to diagnosis. , (2003).</li><li>Straus, W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Letter:+Cleavage+of+heme+from+horseradish+peroxidase+by+methanol+with+inhibition+of+enzymic+activity.">Letter: Cleavage of heme from horseradish peroxidase by methanol with inhibition of enzymic activity.</a> The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society. 22, 908-911 (1974).</li><li>Streefkerk, J. G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Inhibition+of+erythrocyte+pseudoperoxidase+activity+by+treatment+with+hydrogen+peroxide+following+methanol.">Inhibition of erythrocyte pseudoperoxidase activity by treatment with hydrogen peroxide following methanol.</a> The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society. 20, 829-831 (1972).</li><li>Ponder, B. A., Wilkinson, M. 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Standard IHC procedures often require specific adjustments to obtain an optimal result, which commonly implies extensive experience but also &#34;trial and error&#34; approach. From tissue preparation until target visualization, almost each step in the protocol may be subjected to individually designed modifications in order to improve the final outcome. Double staining protocol presented here exemplifies IHC-based protein targeting particularly adjusted for assessing interrelations between the target proteins of our int...

Despite utilization of advanced high-throughput analyses performed on the methylome, transcriptome or even proteome level, immunostaining remains the golden standard for protein detection directly in the tissue sample, cell culture or a cell smear. By revealing the localization/distribution pattern, immunohistochemistry (IHC) may assess relative ratios and topographical interrelations of the target proteins, and even indicate their biological activities. Therefore, IHC is widely utilized for clinical and research purposes, e.g., for diagnosis, treatment evaluations, study of disease mechanisms, functional and phenotypical alterations in animal models, etc.
Essentially comprising histology, pathology, biochemistry and immunology, IHC has significantly advanced since 1941, when fluorescently labeled antibodies were used for the first time to identify Pneumococcal antigens in the infected tissue 1. Visualization of cellular products and components by IHC is based on binding of antibodies (Abs) to their specific antigen (Ag). Besides using fluorophore tagged antibodies, immune reactions can also be visualized by using enzymes like peroxidase 2,3 or alkaline phosphatase 4. Further, colloidal gold-tagged antibodies5 are used for detecting specific antigen-antibody interaction by both light and electron microscopy, while radioactive labels are visualized by autoradiography.
The Ag-Ab immunoreaction can be detected via direct and indirect methods. The direct method is essentially faster and simpler, as it uses directly labeled primary Abs 6. However, due to significant lack of sensitivity, indirect methods are preferred to the direct ones. Two-step indirect detection procedures require unlabeled primary Abs, as the first, and labeled secondary Abs directed against the primary Abs, as the second layer 7. Signal amplification can be achieved by involving further, enzyme-coupled tertiary Ab (three-step indirect method) that binds to the secondary Ab. Commonly used indirect detection methods are avidin-biotin and peroxidase-antiperoxidase (PAP). Alternatively, alkaline phosphatase-antialkaline phosphatase (APAAP) complex can be used instead of the PAP method. Notably, alkaline phosphatase (AP) methods appear to be even more sensitive than immunoperoxidase methods 4. Avidin-biotin complex (ABC) method uses biotinylated secondary Ab in combination with either labeled avidin-biotin complex (LAB), or labeled streptavidin-biotin complex (SLAB). Detection sensitivity can be further increased by involving avidin labeled with peroxidase or alkaline phosphatase 8. Other detection methods in use are polymeric labeling, tyramine amplification and immuno-rolling circle 9. Notably, different detection methods can be combined for multiple Ag detection in the same tissue sample, which was reported for the first time in 1978 4. Simultaneous double immunostaining presented here was performed in formalin-fixed, paraffin-embedded rat CNS and LN tissue sections using peroxidase-bound and AP-conjugated secondary antibodies, respectively. The signals were visualized using 3,3&#39;-diaminobencidine (DAB) chromogen and the Fast Blue (FB) APAAP complex, respectively.

<table border="1">
 <tbody>
 <tr>
 <td></td>
 <td></td>
 <td></td>
 <td>Reagent</td>
 </tr>
 <tr>
 <td>Isoflurane 			(Isofluran): 1-Chlor-2,2,2-trifluorethyl (difluormethyl 			ether) 
 2-Chlor-2-(difluormethoxy)-1,1,1-trifluorethan 			(C3H2ClF5O)</td>
 <td>Baxter</td>
 <td>1001936060</td>
 <td>Eye 			irradiation. Probably influences fertility and damages baby in 			uterus. Administer only in adequately equipped anesthetizing 			environment.</td>
 </tr>
 <tr>
 <td>Sodiumchloride 			(NaCl)</td>
 <td>Merck</td>
 <td>1.0604</td>
 <td></td>
 </tr>
 <tr>
 <td>Phosphate 			Buffer Saline (PBS), tablet</td>
 <td>Sigma-Aldrich</td>
 <td>P4417</td>
 <td></td>
 </tr>
 <tr>
 <td>Paraformaldehyde 			(OH(CH2O)nH (n = 8 - 100), 4% in 1x PBS </td>
 <td>Apl pharma</td>
 <td>34 24 28</td>
 <td>Health 			hazard. Corrosive. Flamable. Acute toxicity.</td>
 </tr>
 <tr>
 <td>Ethanol 			&ge;99.5%, absolute (CH3CH2OH)</td>
 <td>Sigma-Aldrich</td>
 <td>459844-1L</td>
 <td>Flamable.</td>
 </tr>
 <tr>
 <td>Xylene 			(Xylenes, histological grade; C6H4(CH3)2 </td>
 <td>Sigma-Aldrich</td>
 <td>534056</td>
 <td>Flamable. 			Acute toxicity.</td>
 </tr>
 <tr>
 <td>Histo-Comp 			Paraffin 			Wax</td>
 <td>Tissue-Tek</td>
 <td>V0-5-1001 </td>
 <td></td>
 </tr>
 <tr>
 <td>Adhesive 			Microscope Slides</td>
 <td>Starfrost </td>
 <td>MIC-1040-W</td>
 <td></td>
 </tr>
 <tr>
 <td>Xylol 			substitute XEM-200 </td>
 <td>Vogel GmbH</td>
 <td>ND-HS-200</td>
 <td>Respiratory 			sensitization. Carcinogenicity.</td>
 </tr>
 <tr>
 <td>&alpha;- CD8 			(Ox-8) mouse anti-rat, primary antibody</td>
 <td>AbD 			Serotec</td>
 <td>MCA48G</td>
 <td></td>
 </tr>
 <tr>
 <td>&alpha;- Iba1 			(AIF1) mouse anti-rat, primary antibody</td>
 <td>Millipore</td>
 <td>MABN92</td>
 <td></td>
 </tr>
 <tr>
 <td>&alpha;- CD68 			(ED1) mouse anti-rat, primary antibody</td>
 <td>AbD 			Serotec </td>
 <td>MCA341R</td>
 <td></td>
 </tr>
 <tr>
 <td>&alpha;- 			eotaxin C-19 (CCL11) goat anti-rat, primary antibody</td>
 <td>Santa Cruz 			BT</td>
 <td>SC-6181</td>
 <td></td>
 </tr>
 <tr>
 <td>Alkaline 			phosphatase (AP)-conjugated secondary antibody</td>
 <td>Dakopatts, 			Denmark</td>
 <td>D0314</td>
 <td></td>
 </tr>
 <tr>
 <td>Biotinylated 			secondary antibody</td>
 <td>Amersham 			Biotech</td>
 <td>RPN1025</td>
 <td></td>
 </tr>
 <tr>
 <td>Avidin- 			horseradish peroxidase complex (HRP) </td>
 <td>Sigma-Aldrich</td>
 <td>A3151</td>
 <td></td>
 </tr>
 <tr>
 <td>Naphthol 			AS-MX phosphate (C19H18NO5P)</td>
 <td>Sigma-Aldrich</td>
 <td>N4875-1G</td>
 <td>Acute 			toxicity.</td>
 </tr>
 <tr>
 <td>Fast Blue 			RR Salt, Azoic Diazo No. 24 (C15H14ClN3O3 			x 			1/2 ZnCl2)</td>
 <td>Sigma-Aldrich</td>
 <td>FBS25</td>
 <td></td>
 </tr>
 <tr>
 <td>Levamisol 			hydrochloride (C11H13ClN2S)</td>
 <td>Sigma-Aldrich</td>
 <td>31742</td>
 <td>Acute 			toxicity.</td>
 </tr>
 <tr>
 <td>3,3'-Diaminobenzidine 			tetrahydrochloride (DAB Chromogen)</td>
 <td>DAKO</td>
 <td>S3000 </td>
 <td>Highly 			flammable. Toxic.</td>
 </tr>
 <tr>
 <td>Copper 			sulphate (CuSO4)</td>
 <td>Merck</td>
 <td>1.02791</td>
 <td>Acute 			toxicity. Environmental hazzard.</td>
 </tr>
 <tr>
 <td>GelTol 			Aqueous Mounting Medium</td>
 <td>Thermo 			Electron Corporation</td>
 <td>230100</td>
 <td></td>
 </tr>
 <tr>
 <td>Hydrogen 			peroxide, 30% (H2O2)</td>
 <td>Merck</td>
 <td>107210</td>
 <td>Acute 			toxicity.</td>
 </tr>
 <tr>
 <td>Methanol 			(CH3OH)</td>
 <td>Fluka</td>
 <td>65543</td>
 <td>Acute 			toxicity. Respiratory sensitization. Carcinogenicity. Flammable.</td>
 </tr>
 <tr>
 <td>Tris 			(hydroxymethyl) aminomethane, TRIS base (C4H11NO3 			)</td>
 <td>AppliChem </td>
 <td>A1379</td>
 <td>Skin and 			eye irritation.</td>
 </tr>
 <tr>
 <td>Tris 			Buffered Saline (TBS), tablet</td>
 <td>Sigma-Aldrich</td>
 <td>T5030</td>
 <td></td>
 </tr>
 <tr>
 <td>Di- Sodium 			hydrogen phosphate dihydrate (Na2HPO4 			x 			2H2O)</td>
 <td>Merck</td>
 <td>1.0658</td>
 <td></td>
 </tr>
 <tr>
 <td>Sodium 			dihydrogen phosphate monohydrate (NaH2PO4 			x 			1H2O) </td>
 <td>Merck</td>
 <td>1.06346</td>
 <td></td>
 </tr>
 <tr>
 <td>Fetal calf 			serum (FCS) </td>
 <td>Cambrex 			BioScience</td>
 <td>DE-14-802F</td>
 <td></td>
 </tr>
 <tr>
 <td>DAKO 			cytomation wash buffer 10x </td>
 <td>DAKO </td>
 <td>S3006</td>
 <td>Should be 			stored at 2-8 &deg;C to inhibit bacterial growth. Avoid foaming.</td>
 </tr>
 <tr>
 <td>N,N- 			Dimethylformamide; DMF (C3H7NO)</td>
 <td>Fluka</td>
 <td>40250</td>
 <td>Flammable. 			Acute toxicity.</td>
 </tr>
 <tr>
 <td>Glas 			coverslips 24 x 36 mm </td>
 <td>Menzel-Gl&auml;ser</td>
 <td>BB024036A1</td>
 <td></td>
 </tr>
 <tr>
 <td>Hydrochloric acid, conc. (HCl)</td>
 <td>Sigma-Aldrich </td>
 <td>30721</td>
 <td>Corrosive, 			irritant, permeator. Lung sensitizer (as acid mist). Toxic.</td>
 </tr>
 <tr>
 <td>Hydrochloric acid solution 			volumetric, 2M HCl (2N) </td>
 <td>Fluka </td>
 <td>71826</td>
 <td>Corrosive, 			irritant, permeator. Lung sensitizer (as acid mist). Toxic.</td>
 </tr>
 <tr>
 <td>Sodium 			nitrite, ReagentPlus, &ge;99.0% (NaNO2)</td>
 <td>Sigma-Aldrich </td>
 <td>S2252 </td>
 <td>Oxidant. 			Toxic. Dangerous for the environment.</td>
 </tr>
 <tr>
 <td>Ethylenedinitrilotetraacetic 			acid disodium salt dihydrate (EDTA; C10H14N2Na2O8 			x 2H2O)</td>
 <td>Merck</td>
 <td>1.08454</td>
 <td>Oral 			exposures may cause reproductive and developmental effects.</td>
 </tr>
 <tr>
 <td></td>
 <td></td>
 <td></td>
 <td> Equipment</td>
 </tr>
 <tr>
 <td>Tissue-Tek 			V.I.P 			Vacuum Infiltration Processor </td>
 <td>Sakura</td>
 <td>5902 VIP 			Jr. 115 V, 60 Hz</td>
 <td></td>
 </tr>
 <tr>
 <td>Hacker-Bright 			8000 Series Base Sledge Microtome </td>
 <td>Hacker 			instruments</td>
 <td></td>
 <td></td>
 </tr>
 <tr>
 <td>Household 			food steamer </td>
 <td>Braun</td>
 <td>MultiGourmet 			FS 20</td>
 <td></td>
 </tr>
 <tr>
 <td>Light 			microscope </td>
 <td>Leica 			Polyvar 2</td>
 <td></td>
 <td></td>
 </tr>
 </tbody>
 </table>

immunohistochemical analysis in the rat central nervous system and peripheral lymph node tissue sections

Immunohistochemistry (IHC) provides highly specific, reliable and attractive protein visualization. Correct performance and interpretation of an IHC-based multicolor labeling is challenging, especially when utilized for assessing interrelations between target proteins in the tissue with a high fat content such as the central nervous system (CNS).
Our protocol represents a refinement of the standard immunolabeling technique particularly adjusted for detection of both structural and soluble proteins in the rat CNS and peripheral lymph nodes (LN) affected by neuroinflammation. Nonetheless, with or without further modifications, our protocol could likely be used for detection of other related protein targets, even in other organs and species than here presented.

Double immunostainings (co-stainings) were performed in formalin-fixed, paraffin-embedded rat CNS and LN sections. 3-5 &#181;m thick tissue slices were cut using a sledge microtome, mounted subsequently onto pre-coated adhesive glass slides and treated as previously described 10,11,12. Briefly, after deparaffinizing, tissue rehydration and endogenous peroxidase inactivation, sections were subjected to the antigen retrieval process, followed by a blocking step to eliminate unspe...

Watch this Scientific Journal Video about Immunohistochemical Analysis in the Rat Central Nervous System and Peripheral Lymph Node Tissue Sections at JoVE.com

Immunohistochemical Analysis in the Rat Central Nervous System and Peripheral Lymph Node Tissue Sections

We here present an optimized, detailed protocol for double immunostaining in formalin-fixed, paraffin-embedded rat central nervous system (CNS) and peripheral lymph node (LN) tissue sections.

Immunohistochemistry (IHC) provides highly specific, reliable and attractive protein visualization. Correct performance and interpretation of an IHC-based ...

Research

JoVE Journal

Neuroscience

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