Pavel Tomancak

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome.

Systematic determination of patterns of gene expression during Drosophila embryogenesis.

Computational identification of Drosophila microRNA genes.

Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development.

Global analysis of patterns of gene expression during Drosophila embryogenesis.

Transcriptional control in embryonic Drosophila midline guidance assessed through a whole genome approach.

Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function.

Mapping the gene expression universe.

Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution.

Globally optimal stitching of tiled 3D microscopic image acquisitions.

CATMAID: collaborative annotation toolkit for massive amounts of image data.

A toolkit for high-throughput, cross-species gene engineering in Drosophila.

Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome.

In vivo RNAi rescue in Drosophila melanogaster with genomic transgenes from Drosophila pseudoobscura.

Visualization of image data from cells to organisms.

Mapping the complexity of transcription control in higher eukaryotes.

Software for bead-based registration of selective plane illumination microscopy data.

As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets.

An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes.

Meeting report: first light sheet based fluorescence microscopy workshop.

An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy.

Gene expression divergence recapitulates the developmental hourglass model.

linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type.

Restoration of uneven illumination in light sheet microscopy images.

Production of fosmid genomic libraries optimized for liquid culture recombineering and cross-species transgenesis.

Recombination-mediated genetic engineering of large genomic DNA transgenes.

Abundant occurrence of basal radial glia in the subventricular zone of embryonic neocortex of a lissencephalic primate, the common marmoset Callithrix jacchus.

The evolution of early animal embryos: conservation or divergence?

Elastic volume reconstruction from series of ultra-thin microscopy sections.

TrakEM2 software for neural circuit reconstruction.

Current challenges in open-source bioimage informatics.

Fiji: an open-source platform for biological-image analysis.

Biological imaging software tools.

ImgLib2--generic image processing in Java.

An excess of gene expression divergence on the X chromosome in Drosophila embryos: implications for the faster-X hypothesis.

OpenSPIM: an open-access light-sheet microscopy platform.

The earliest transcribed zygotic genes are short, newly evolved, and different across species.

Going "open" with mesoscopy: a new dimension on multi-view imaging.

Bioimage Informatics in the context of Drosophila research.

Efficient Bayesian-based multiview deconvolution.

Open-source solutions for SPIMage processing.

Introns and gene expression: cellular constraints, transcriptional regulation, and evolutionary consequences.

An adaptive threshold in mammalian neocortical evolution.

Guide to light-sheet microscopy for adventurous biologists.

Systematic imaging reveals features and changing localization of mRNAs in Drosophila development.

Endogenously tagged rab proteins: a resource to study membrane trafficking in Drosophila.

BigDataViewer: visualization and processing for large image data sets.

Probing the kinetic landscape of Hox transcription factor-DNA binding in live cells by massively parallel Fluorescence Correlation Spectroscopy.

An automated workflow for parallel processing of large multiview SPIM recordings.

A role for tuned levels of nucleosome remodeler subunit ACF1 during Drosophila oogenesis.

A genome-wide resource for the analysis of protein localisation in Drosophila.

Comment on "Cortical folding scales universally with surface area and thickness, not number of neurons".

Control of Hox transcription factor concentration and cell-to-cell variability by an auto-regulatory switch.

Attachment of the blastoderm to the vitelline envelope affects gastrulation of insects.

Publisher Correction: Attachment of the blastoderm to the vitelline envelope affects gastrulation of insects.