Isolation of Mouse Epidermal Keratinocytes and Their In Vitro Clonogenic Culture

Summary

The goal of this protocol is to isolate epidermal keratinocytes from the dorsal skin of adult mice for a variety of downstream applications such as molecular biology, biochemistry, fluorescence activated cell sorting, and primary in vitro uses (e.g., clonogenic keratinocytes).

Abstract

The protocol described here is a reliable method of harvesting primary keratinocytes from adult female mice (54 ± 2 days old) yielding approximately 30 x 10⁶ viable cells per mouse. Primary adult mouse keratinocytes are harvested from the dorsal skin of female mice. Male mice (~6 weeks old) can be used for keratinocyte harvesting depending on the requirements of the experiment. Euthanized mice are shaved and sterilized with serial washes in povidone iodine and ethanol solutions (70% alcohol). After disinfecting the mice, the dorsal skin is removed and the subcutaneous fat and muscle are removed with a scalpel and discarded. The skins are cut into small pieces and treated with a mild, low temperature trypsinization to detach the lower dermis from the epidermis. The scraped epidermises are stirred at low speed, filtered to remove the hairs, counted, and re-suspended in culture medium. This method provides an excellent single cell suspension of highly culturable cells for many downstream applications.

Introduction

Mammalian skin covers the entire body and serves a multitude of functions (e.g., a primary physical barrier, temperature regulation, and moisture retention). Over the last five decades, basic research on mouse skin has yielded new information on the structure and function of the skin. The mouse skin model has greatly helped understanding of the basic biology behind the complex molecular mechanisms of chemical or ultraviolet radiation-induced carcinogenesis. These mouse skin models provided a significant contribution towards understanding of human skin diseases and their mitigation. To explore further molecular dissection of the primary keratinocytes in hair follicle developmental biology, stem cell research, carcinogenesis, and genetic exploration of epidermis, it is frequently desirable to isolate and culture primary epithelial keratinocytes from mice skin to use in parallel with in vivo experiments. The motivating factor in developing this method was the need for an in vitro assay for clonogenic epidermal and hair follicle stem cells^1,2. There was also an urgent need for single cell suspensions of epidermal cells suitable for clonogenic assays³, fluorescence activated cell sorting, and flow cytometry^3,4. The advantages of this method are a robust harvest increase an order of magnitude over other methods^5,6, inclusion of the epithelial portion of the hair follicles, and the high culturability of the harvested cells. In the 1980s, there were no known methods that could meet these requirements. In subsequent years, this method was refined to increase cell yield. The principal limitation of this method would be masking of some trypsin sensitive antibodies that would compromise immunoreactivity⁶.

The mice received husbandry according to the Specific Pathogen Free guidelines. One to five female mice 54 ± 2 days of age were obtained. In older mice, the viability of keratinocytes will be reduced due to anagen phase (growth) of the hair cycle. Also, the process of trypsinization is more difficult compared to young mice. The harvesting procedure has been successfully optimized for the thinner skin of female mice compared to male. Male mice are generally not used for keratinocyte harvests as they have a tendency to fight with one another during housing and therefore may leave scratches or wounds on the skin.

Protocol

All vertebrate animal use protocols have been approved by the University of Minnesota Institutional Animal Care and Use Committee in accordance with recommended NIH and government guidelines.

1. Feeder Layer Initialization and Subculturing

1. Thaw one cell vial containing frozen Swiss mouse 3T3 from the liquid nitrogen tank by placing the vial in a 37 °C water bath for 1-2 min. The number of cells in the vial is approximately 1 x 10⁶.
2. Remove the 3T3 cell vial when the final sliver of ice has melted. Wipe the tube with a 70% alcohol swab. Then, transfer the vial to a biosafety cabinet.
3. Transfer the cells slowly into a T-150 flask, and rinse the 3T3 vial with 1 mL of CGM medium. Slowly add 30 mL of pre-warmed 3T3 Complete Growth Medium (CGM) to the cells. Gently rock the flask to evenly spread the 3T3 fibroblast cells. Label the flask with cell line details, date, and passage number appropriately.
4. Incubate the cells at 37 °C with 5% CO₂ and 95% humidity.
   NOTE: According to the ATCC, the doubling time of Swiss mouse 3T3 is 18 h; when confluent (contact inhibited), the density is about 40,000 cells per cm². We use a particular line of 3T3 within 10-15 passages after initialization. More rapid growth or the presence of spindle-shaped cells can occur at higher passages and is usually a sign that the 3T3 will not perform as well as feeder cells for adult mouse keratinocytes. If rapid growth occurs, it is better to initiate a new line from lower passage cells.
5. Change media after 24 h to remove dead cells and remaining DMSO (cryopreservation agent), and twice weekly thereafter. Allow cells to proliferate around 80% confluence and use T-150 flasks for culture initiation. Use T-225 flasks for subculture after initialization.
6. To subculture 3T3 fibroblast cells, remove the flask from the cell culture incubator and wash twice with cold sterile PBS (1x) with gentamycin. Pipet 10 mL of pre-warmed (37 °C water bath) trypsin solution (0.25%) into each T-225 flask.
   1. Place the flask on a warming plate for 3-8 min. Remove the flask and gently use palms to tap the walls of the flask to detach cells and confirm cell detachment under inverted microscope. Trypsin solution may appear cloudy with detached 3T3 cells.
7. Pipet the trypsin solution 3–4x to wash the cell growth surface of the flask and transfer the trypsinized cell to 30 mL of CGM in a 50 mL conical tube. Rewash the flask 3–5x with 10 mL of the CGM-trypsin-cell mixture from the 50 mL conical tube.
   NOTE: The contents of two flask contents can be added to a 50 mL tube; if only one flask is used, then place 10 mL of trypsin/cells into 20 mL of CGM in a 50 mL tube.
8. Centrifuge the 50 mL conical tube at 160 x g for 7 min at 4 °C.
9. Now aspirate the supernatant and resuspend the cell pellet with 5 mL of CGM, pipetting gently ~10x to completely disrupt the cell pellet. Add 10 mL of CGM to bring the total volume of the 50 mL conical tube to 15 mL.
   1. Mix again ~10x and place 5 mL of the cell suspension into 3 separate T-150 flasks. The subculture ratio is 1:3 in T-225 flasks or 1:4 in T-150 flasks. Add 30 mL of pre-warmed 3T3 CGM to each of the flasks.
10. Label the flask with the cell line name, the date of cell seeding, and the passage number.
11. To freeze down 3T3 cells following centrifugation in the subculture step, remove the 50 mL tube from the centrifuge and place on an ice bucket. Aspirate the supernatant and resuspend the cell pellet with 1 mL of 5% DMSO-DMEM mixture (see Table 1) for each flask harvested.
12. Place 1 mL of DMSO-DMEM mixture with cell suspension into each cryovial (one cryovial per 3T3 flask harvested). Label the vial with the passage number, the cell line name (3T3), and the date that the cells were frozen.
13. Place these 3T3 cell vials into cell freezer jar (see Table of Materials) and transfer to -70 °C freezer for >5 h. Careful remove and transfer the vials from the cell freezer jar and place in a liquid nitrogen storage tank for long-term storage until next use. Enter information about the cell line name, the location in tank and the date in the laboratory liquid nitrogen inventory sheet.

2. Preparation of 3T3 Feeder Layer for X-ray Irradiation and Seeding

1. Prepare 3T3 cells one week before their irradiation and allow them to grow ~100% confluence. The 3T3 cells are typically within the passages of 120 to 130.
2. For successful clonogenic assays of primary keratinocytes, before seeding 3T3 cells, surface coat the 60 mm Petri dishes with a collagen.
   1. Pipet around 2–3 mL of the collagen-coating solution into 60 mm Petri dishes to coat the bottom surface and remove the excess collagen-coating liquid (see Table 1). Transfer the Petri dishes to a 37 °C incubator with 5% CO₂ for a minimum of 1 h. Do not let the dishes dry in incubator.
3. X-ray irradiation step: Follow steps 1.4–1.6. Use 50 mL of fresh CGM to re-suspend the cell pellet, close the conical tube and seal with paraffin sealing film. To avoid any contamination, use plastic bags to double bag the paraffin-sealed cell containing tube and place on ice. A mitomycin based alternative feeder layer can be used for keratinocyte culture⁷.
4. Irradiate fibroblast 3T3 cells in the 50 mL conical tube with a 5,000 rads (50 Cgy) dose with a biological x-ray machine. Irradiate these cells along with the CGM media.
   1. Following X-ray irradiation, centrifuge cells at 160 x g for 7 min at 4 °C. Aspirate the supernatant media and gently resuspend cell pellet with 5 mL of CGM triturating gently ~10x. Now bring the final volume to 30 mL with additional 25 mL of medium and triturate 10x. These triturating steps are crucial for uniform 3T3 fibroblast layer for clonogenicity assay.
5. Viable Cell counting: Count the keratinocytes using a regular glass hemocytometer. Take approximately 0.5 mL of the cells and place into a 1.5 mL tube. Remove 200 µL of cell mixture and add an equal volume of 0.4% Trypan blue solution and mixture 3–4x. Transfer cells with a hemocytometer and count all nucleated cells (small gold and pink cells) as viable cells. Calculate the final concentration of viable gold cells.
6. Pipette 1 x 10⁶ 3T3 cells (a minimum of 7 x 10⁵) cells may be used) into 60 mm collagen-coated Petri dishes (step 2.2) and gently add 4 mL of modified high-calcium Williams E media (see Table 1). Allow freshly seeded 3T3 cells to attach for 24 h. On the next day, harvest the fresh primary keratinocyte and seed them on top of attached 3T3 fibroblast layer for clonogenic assay as indicated below.

3. Primary Keratinocyte Harvesting and Seeding

1. Euthanize four to five adult female mice via CO₂ inhalation according to approved animal facility/IACUC standards. However, this protocol may also be used for single female/male mice.
   1. Clip approximately 9 cm² of the dorsal fur with an electric animal clipper and place all clipped mice into a 500 mL jar with enough povidone iodine antiseptic solution (not scrub) to cover them for 1–2 min. Shake the jar well to evenly coat the antiseptic solution over the mice.
   2. Pour off the solution and rinse with clean water until the liquid runs clear. Repeat the same antiseptic wash followed by a water rinse. After the antiseptic wash with iodine solution, soak all the mice in 70% ethanol for 5–10 min.
      NOTE: Mice with light fur (e.g., BALB/c) will retain a slight yellowish color from the antiseptic iodine washes, while darker mice (e.g., C57BL/6) will not. Notably, cell viability or culture growth is not affected due to the yellow color.
2. Carefully remove the clipped dorsal skin using thumb forceps and scissors in a laminar flow hood. Place the excised dorsal skin in conical tube filled with PBS/2x gentamycin. Avoid using ventral side skin to prevent mammary cell contamination in culture.
3. Using autoclaved forceps and a scalpel, place one dorsal skin at a time hairy side down onto a thin Petri dish. Start scraping all subcutaneous tissue including fat from the ventral side of the skin tissue until it is semi-translucent. Try to remove maximum traces of subcutaneous tissue without tearing the skin (hair follicle part). Also, do not scrape for a long time and avoid skin drying.
   1. Keep scraped skin in PBS solution until all other remaining skins are processed. Using a scalpel, slice skins into 0.5 cm x 1–1.5 cm strips and place the hairy side up onto a sterile Petri dish.
4. Carefully pipette 20 mL of PBS/2x Gentamicin solution mixed with trypsin (0.25%) into a 100 mm x 20 mm plastic Petri dish. Using sterile forceps, transfer the skins and float them hairy side up on the surface of trypsin solution for 2 h in a 32 °C incubator.
   NOTE: Trypsinization time and temperature are crucial for good yield of highly culturable primary keratinocytes. Although other methods may provide good yields of viable cells, the culturability of the keratinocytes has been less satisfactory.
   1. During this 2 h incubation time, coat dishes with collagen coating and place them at 37 °C for 1 h (see step 3.1.2). For clonogenic assays, the 60 mm Petri dishes have already been coated 24 h prior to keratinocyte harvesting to allow the irradiated 3T3 feeder layer to attach to bottom and spread evenly.
      NOTE: Coating of culture dishes for clonogenic culture is very important for proper attachment, colony formation, and ultimate growth/proliferation of mice epidermal keratinocytes.
5. Epidermal scraping step: Arrange a sterile plastic square Petri dish and create a surface at a 30° incline for proper epidermal scraping with 15 mL of harvesting medium (see Table 1). Carefully remove a floating skin strip from the trypsin solution with curved forceps. With a new scalpel blade, scrape off the epidermis and hairs into the medium.
   1. Do not use excessive force, but use sufficient force to scrape the epidermis, or it will affect the cell viability.
   2. During epidermis scraping, keep the blade perpendicular to the skin piece. If the blade is angled toward the motion of the blade, there are more chances of skin tearing. If the blade is angled away from the blade movement, there are more chances of insufficient epidermis removal.
6. Carefully pour the harvesting medium containing scraped epidermal cells into a sterile 60 mL jar (autoclavable and reusable) with a 1.5 inch magnetic stir bar. Rinse the Petri dish with additional harvesting medium to collect remaining epidermal cells and bring the final volume to 30 mL. Use a magnetic stirrer and stir at 100 rpm for 20 min at room temperature. This process will remove the trapped epidermal cells from hairs.
7. Place a sterile 70 µm cell strainer on the top of a 50 mL conical tube. The cell strainer fits on top of a 50 mL conical tube.
   1. Take the jar inside a biosafety hood. Remove the stir bar and pour the contents into strainer filter attached to a 50 mL conical tube. Strain out undesired hair and sheets of stratum corneum.
   2. Press the hairs along with stratum corneum materials within the strainer and manipulate them to release the trapped hair cells. Use 5 mL of harvesting medium to allow remaining trapped cells to release and flow into the tube. Bring the total volume up to 50 mL in conical tube.
8. Cap the 50 mL conical tube with cell filtrate and centrifuge at 160 x g for 7 min at 4 °C. Next aspirate the supernatant and add 5 mL of harvesting medium. Resuspend the cell pellet by triturating gently ~20x with a 5 mL pipet.
   1. At this step, keep the cells in an icebox to avoid any aggregation. Add 25 mL of harvesting medium and triturate again (20–25x).
   2. To ensure an accurate keratinocyte count at this step, take 1 mL of cell suspension and add 19 mL harvesting medium. Now the cell dilution is 1:20 in 50 mL conical tube. If keratinocytes are harvested from a single mouse, adjust the volume of the cell suspension. Instead of 30 mL, use 15 mL and make a 1:10 dilution for counting the cells.
9. Pipet 0.5 mL of diluted cells from the 50 mL conical tube (1:20 dilution) and transfer to a 1.5 mL autoclaved microcentrifuge tube. Remove 0.2 mL (200 µL) of cell mix to another 1.5 mL microcentrifuge tube and add an equal volume (200 µL) of 0.4% Trypan blue solution. Gently mix this solution 3x and transfer cells to a hemocytometer for counting nucleated keratinocytes.
   1. Score all dark blue cells positive for Trypan blue as non-viable dead cells, and score small gold and pinkish cells as viable cells. The final keratinocyte yield per mouse should be around 30 million viable cells.
10. Centrifuge the original 50 mL conical tube (from step 3.8) for 7 min at 160 x g at 4 °C. At this step, resuspend the cells in desired medium and make the required dilution for seeding cells.
    1. For mass culture, seed 2 to 4 million viable gold cells in each 35 mm Petri dish in cell culture medium (KGM-type medium + supplements for monolayer cultures) (see Table 1). For a clonogenic (colony formation) assay, seed 1,000 cells per 60 mm Petri dish on X-ray irradiated Swiss mouse 3T3 feeder layers with collagen-coating and modified William’s E medium with supplements and serum.
    2. Use a total of 2 to 4 mL medium for 35 mm and 60 mm Petri dishes, respectively. Also, formulate DMEM and Williams E medium procured from ATCC with reduced levels of sodium bicarbonate for use at 5% CO₂.
11. Grow the culture cells (mass or clonogenic) at 32 °C, 95% humidity with 5% CO₂. Change the media one day after initial seeding for mass culture, and then 3x weekly thereafter. However, for clonal assays, the first medium change is 2 days after cell seeding and 3x weekly thereafter.
12. For clonal culture, cultivate cells at two- and four-week intervals. After completion of clonal cultures (2 or 4 weeks), aspirate the medium. Fix the colonies in 10% buffered formalin overnight at room temperature and stain with 0.5% rhodamine B in autoclave water for 1 h. Then, remove the rhodamine B stain with a pipette from the edge of the dishes.
    1. Rinse the dishes in cold autoclaved water until the dishes run clear. Put the dishes inclined on the lid of the dishes and let them dry for final colony counting. Notably, when performing clonogenic culture assay, never pipet <1 mL of cells. If cells are concentrated, serially dilute the cell concentration.

Discussion

The keratinocyte harvesting method described here was developed to produce high yields of highly culturable primary epidermal keratinocytes from the back of adult female mice. These keratinocytes are suitable for flow cytometry, molecular biology application, and primary cell culture, including the clonogenic assay reported here. This keratinocyte harvesting method also has been useful for studying other downstream aspects of cutaneous chemical carcinogenesis and tumor promotion^1,13.

There are several critical steps in the protocol. First, for rigor and reproducibility, female mice of age 54 ± 2 days were used. This has enabled us to perform sensitive and quantitative colony assays from multiple strains of mice and to use them as a phenotype in linkage analysis leading to identification of least one new stem cell regulatory gene^10,11. Second, it is helpful to cut the skins into smaller pieces, as the trypsinization is more effective than trying to keep the skin whole. Third, the time and the temperature of the trypsin flotation is very important to the subsequent culturability. Moreover, one needs to "poke considerably" at the hairs remaining on the filter to dislodge the attached cells. This step is important to obtain high yields of cells. Furthermore, the 32 °C temperature of the incubator is important for the longer-term cultivation of keratinocytes from adult mice. Finally, in this protocol, the parallel readouts of in vitro and in vivo experiments¹ are based on primary cultures rather than subcultures or cell lines. Notably, if harvesting primary keratinocytes for the first time using this protocol, keep the remaining dermis after scraping to confirm the full removal of hair follicles along with epidermis by histopathological observation.

The principal strength of this protocol for harvesting adult mouse keratinocytes is that it produces high yields of culturable cells that are suitable for many downstream applications. The chief limitation is that some cell surface epitopes may be sensitive to trypsinization such that immunostaining may be compromised. Therefore, when testing a new cell surface antibody, it may be prudent to use a dispase⁶ or thermolysin⁵ based method for harvesting for comparison. The significance of this protocol is that it has been rigorously tested, quantified, and applied to such diverse applications as assays for clonogenic stem cells^1,9,10,11, for mass cultures in biochemistry⁸, for FACS sorting in stem cell analysis^3,4, for molecular biology^3,12, and for ongoing RNA and DNA sequencing.

Materials

Name	Company	Catalog Number	Comments
0.4% Trypan blue 1X in 0.9% saline	Life Technologies Gibco	15250-061
1 M HEPES Buffer	Sigma	H0887	Sterile
1.5-inch magnetic stir bar with pivot ring	Bel-Art, Wayne	371101128	in 2 oz Nalgene jar
10 mL disposable pipettes	BD Falcon	357551
15 mL sterile conical tube	BD Falcon	352097
150 cm2 (T-150) culture flask	Corning	430825
2 mL Screw Cap Micro Tube Conical	Sarstedt	72.608
2 oz Nalgene jar	Thermo Fisher Scientific	2118-0002	60 mL
2.5% Trypsin solution 10X	Life Technologies Gibco	15090-046
225 cm2 (T-225) culture flask	Corning	431082
32 oz Nalgene Square Storage Bottles: PETG	Thermo Fisher Scientific	2019-1000	1000 mL
35-mm sterile culturing dish	Corning	430165
5 mL disposable pipets	BD Falcon	357543
50 mL sterile conicle tube	BD Falcon	352098
60-mm sterile culturing dish	Corning	430166
70% ethanol
90-mm diameter Spectra Mesh filter, 74-µm pore size	Spectrum Laboratories	145956
Antibiotics (penicillin-streptomycin)	Life Technologies Gibco	15140-122
Bovine calf serum (BCS)	Thermo Fisher Scientific Hyclone	SH30073.03
Bovine serum albumin	BD Biosciences	354331
CD34 Ram34 FITC conjugated antibody	BD Pharmingen	553733
CD49f (alpha6-integrin, GOH3) PE conjugated antibody	BD Pharmingen	555736
Cell Strainer, 70-µm sterile	BD Discovery Labware	352350
Collagen, Bovine, Type I, 30mg	BD Biosciences	354231
CoolCell Economical cell freezing container for 1 or 2 mL cryovials	Biocison	BCS-136PK
Corning 2mL Polypropylene Cryogenic Vial, Self-Standing with Round Bottom	Corning	430659
Dimethyl sulfoxide (DMSO)	Sigma	D2650
Distilled Milli-Q water			made fresh; twice distilled reverse osmosis water
Dulbecco’s phosphate-buffered saline 1X, Ca2+ and Mg2+ free	Life Technologies Gibco	14190-144	Sterile
Dulbecco's Modified Eagle's Medium (DMEM)	ATCC	30-2002
Fetal bovine serum (FBS)	Thermo Fisher Scientific Hyclone	SH 300070.03
Fibronectin	Sigma	F1141-5MG
Fisherbrand 4 oz. Sterile Specimen Container	Fisher Scientific	16-320-730
Gentamicin 50 mg/mL 10	Life Technologies Gibco	15750-060
KGM	Lonza	CC-3103
Nalgene “Mr. Frosty" cell freezer	Thermo Fisher Scientific	5100-0001
Nalgene PC Straight-Side Wide-Mouth Jars, 16oz	Thermo Fisher Scientific	2116-0500
No. 22 sterile stainless-steel blades	BD Bard-Parker	371222
No. 4 scalpel handles	Biomedical Research Instruments	26-1200	In a cup with 70% ethanol
One pair of full-curve eye dressing forceps	Militex	18-784	In a cup with 70% ethanol
One pair of scissors	Biomedical Research Instruments	25-1050	In a cup with 70% ethanol
One pair of thumb dressing forceps	Militex	6-4	In a cup with 70% ethanol
Oster Pro-Cord/Cordless Trimmer no.40 blade	Jarden Consumer Solutions/Oster	78997-010
Plastic Petri dish 100 mm X 20 mm sterile	Corning	430167
Pyrex Brand Plain Stemless Glass Funnel	Corning	6240-75
Rat IgG2akappa FITC isotype control antibody	BD Pharmingen	553929
Rat IgG2akappa PE isotype control antibody	BD Pharmingen	555844
SFM	Life Technologies Gibco	10725-018
SMEM	Life Technologies Gibco	11380-037
SMEM: Ca2+ and Mg2+ free minimal essential medium for suspension culture	Life Technologies Gibco	11380-037
Square sterile plastic Petri dishes	BD Falcon	351112
Swiss mouse 3T3 fibroblasts	ATCC	CCL-92	used within 10 passages
Triadine; 10% Povidone-Iodine Prep Topical Solution, 16oz	Triad Group	10-8216
VWR Plastic Petri dishes, sterile Space Saver 100 X 10	VWR	25384-324
Williams E Medium	Life Technologies Gibco	12551-032
Ziploc bag