Puncta Analyzer Plug-in Ben A. Barres laboratuar J Barry Wark (Güncel adresi: Physion Danışmanlık) tarafından yazılmıştı (Stanford Üniversitesi). Finansman; <ul><li> Alfred P. Sloan Vakfı </li><li> Esther A. ve Joseph Klingenstein Fonu, Inc. </li><li> Geniş Biyomedikal Araştırma Vakfı </li><li> Cure Huntington Hastalığı Girişimi </li></ul>

<ol>
	<li>Barres, B. A., Silverstein, B. E., Corey, D. P., Chun, L. L. Y. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Immunological,+morphological,+and+electrophysiological+variation+among+retinal+ganglion+cells+purified+by+panning.">Immunological, morphological, and electrophysiological variation among retinal ganglion cells purified by panning.</a> Neuron. 1, 791-803 (1988).</li><li>Meyer-Franke, A., Kaplan, M. R., Pfrieger, F. W., Barres, B. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Characterization+of+the+signaling+interactions+that+promote+the+survival+and+growth+of+developing+retinal+ganglion+cells+in+culture.">Characterization of the signaling interactions that promote the survival and growth of developing retinal ganglion cells in culture.</a> Neuron. 15, 805-819 (1995).</li><li>Eroglu, C. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Gabapentin+receptor+alpha2delta-1+is+a+neuronal+thrombospondin+receptor+responsible+for+excitatory+CNS+synaptogenesis.">Gabapentin receptor alpha2delta-1 is a neuronal thrombospondin receptor responsible for excitatory CNS synaptogenesis.</a> Cell. 139, 380-392 (2009).</li><li>Pfrieger, F. W., Barres, B. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Synaptic+efficacy+enhanced+by+glial+cells+in+vitro.">Synaptic efficacy enhanced by glial cells in vitro.</a> Science. 277, 1684-1687 .</li><li>Ullian, E. M., Sapperstein, S. K., Christopherson, K. S., Barres, B. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Control+of+synapse+number+by+glia.">Control of synapse number by glia.</a> Science. 291, 657-661 (2001).</li><li>Christopherson, K. S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Thrombospondins+are+astrocyte-secreted+proteins+that+promote+CNS+synaptogenesis.">Thrombospondins are astrocyte-secreted proteins that promote CNS synaptogenesis.</a> Cell. 120, 421-433 (2005).</li><li>Godement, P., Salaun, J., Imbert, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Prenatal+and+postnatal+development+of+retinocollicular+projections+in+the+mouse.">Prenatal and postnatal development of retinocollicular projections in the mouse.</a> J. Comp. Neurol. 230, 552-575 (1985).</li><li>Schmidt, J. T. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Formation+of+retinotopic+connections:+selective+stabilization+by+an+activity-dependent+mechanism.">Formation of retinotopic connections: selective stabilization by an activity-dependent mechanism.</a> Cell. Mol. Neurobiol. 5, 65-84 (1985).</li><li>Sachs, G. M., Jacobson, M., Caviness, V. S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Postnatal+changes+in+arborization+patterns+of+murine+retinocollicular+axons.">Postnatal changes in arborization patterns of murine retinocollicular axons.</a> J. Comp. Neurol. 246, 395-408 (1986).</li><li>Elmariah, S. B., Oh, E. J., Hughes, E. G., Balice-Gordon, R. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Astrocytes+regulate+inhibitory+synapse+formation+via+Trk-mediated+modulation+of+postsynaptic+GABAA+receptors.">Astrocytes regulate inhibitory synapse formation via Trk-mediated modulation of postsynaptic GABAA receptors.</a> J. Neurosci. 25, 3638-3650 (2005).</li><li>Hughes, E. G., Elmariah, S. B., Balice-Gordon, R. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Astrocyte+secreted+proteins+selectively+increase+hippocampal+GABAergic+length,+branching+and+synaptogenesis.">Astrocyte secreted proteins selectively increase hippocampal GABAergic length, branching and synaptogenesis.</a> Moll. Cell. Neurosci. 43, 136-145 (2010).</li></ol>

RGCs eksitatör projeksiyonlar büyük ölçüde odak neyin deneysel hedefleri bağlamında kültür arıtılmış veya beyin bölümünde, yukarıda açıklanan sinaps tahlil ya dayanır. Biz eksitatör sinapslar (Tablo 1) etiketleme için iyi bir referans masayı antikorları sağladı. Bu sinaps tahlil, sinaps herhangi bir nöronal nüfusun sayısı ya da seçici bir pre-ve postsinaptik işaretleyici olduğu başka herhangi bir sinaptik alt tipi ölçmek için adapte edilebilir. Örneğin...

<table border="1" cellpadding="0" cellspacing="0"><tbody><tr><td></td><td> Antijen </td><td> Tür </td><td> Poliklonal / monoklonal </td><td> Satıcı </td><td> Katalog Numarası </td><td> Seyreltme </td><td> Kültür çalışır. </td><td> İşleri Kısım </td></tr><tr><td rowspan="10"> Presinaptik </td><td> Synapsin </td><td> Tavşan </td><td> Poliklonal </td><td> Synaptic Sistemleri </td><td> 106004 </td><td> 1:750 </td><td> Y </td><td> ND </td></tr><tr><td> Synapsin </td><td> Fare </td><td> Monoklonal </td><td> Synaptic Sistemleri </td><td> 106001 </td><td> 1:500 </td><td> Y </td><td> Y </td></tr><tr><td> Fagot </td><td> Fare </td><td> Monoklonal </td><td> Testi Tasarımlar </td><td> VAM-PS003F </td><td> 1:500 </td><td> Y </td><td> Y </td></tr><tr><td> Fagot </td><td> Guinea Pig </td><td> Poliklonal </td><td> Synaptic Sistemleri </td><td> 141004 </td><td> 1:1000 </td><td> Y </td><td> ND </td></tr><tr><td> Synaptotagmin 1 </td><td> Tavşan </td><td> Poliklonal </td><td> Synaptic Sistemleri </td><td> 105002 </td><td> 1:750 </td><td> Y </td><td> N </td></tr><tr><td> Synaptobrevin 2 (C1.69.1) </td><td> Fare </td><td> Monoklonal </td><td> Synaptic Sistemleri </td><td> 104211 </td><td> 1:500 </td><td> Y </td><td> Y </td></tr><tr><td> Sinaptofizin (C1.7.2) </td><td> Fare </td><td> Monoklonal </td><td> Synaptic Sistemleri </td><td> 101011 </td><td> 1:500 </td><td> Y </td><td> Y </td></tr><tr><td> VGlut1 </td><td> Fare </td><td> Monoklonal </td><td> Millipore </td><td> MAB5502 </td><td> 1:2500 </td><td> N </td><td> Y </td></tr><tr><td> VGlut1 </td><td> Kobay </td><td> Poliklonal </td><td> Millipore </td><td> AB5905 </td><td> 1:2500 </td><td> N </td><td> Y </td></tr><tr><td> VGlut2 </td><td> Kobay </td><td> Poliklonal </td><td> Millipore </td><td> AB2251 </td><td> 1:2500 </td><td> N </td><td> Y </td></tr><tr><td rowspan="6"> Postsinaptik </td><td> PSD-95 (6G6-1C9 klon) </td><td> Fare </td><td> Monoklonal </td><td> Affinity Bio Reaktifleri </td><td> MA1-045 </td><td> 1:750 </td><td> Y </td><td> N </td></tr><tr><td> PSD-95 </td><td> Tavşan </td><td> Poliklonal </td><td> Zymed </td><td> 51-6900 </td><td> 1:500 </td><td> N </td><td> Y </td></tr><tr><td> Beysbolde tur vuruşu </td><td> Fare </td><td> Monoklonal </td><td> Synaptic Sistemleri </td><td> 160011 </td><td> 1:500 </td><td> Y </td><td> ND </td></tr><tr><td> Beysbolde tur vuruşu </td><td> Sıçan </td><td> Poliklonal </td><td> Millipore </td><td> AB5875 </td><td> 1:500 </td><td> Y </td><td> Y </td></tr><tr><td> Gephyrin </td><td> Tavşan </td><td> Poliklonal </td><td> Synaptic Sistemleri </td><td> 147003 </td><td> 1:500 </td><td> Y </td><td> Y </td></tr><tr><td> Gephyrin </td><td> Fare </td><td> Monoklonal </td><td> Synaptic Sistemleri </td><td> 147 </td><td> 1:200 </td><td> Y </td><td> Y </td></tr></tbody></table> Tablo 1: biz bizim sinaps tayininde başarılı bir şekilde kullanılmaktadır olduğunu iyi pre-ve postsinaptik belirteçlerin Listeler örnekler. Bu mevcut tüm belirteçlerin bir liste olmadığını farkında olun. Y = Evet, N = Hayır, ND = Tespit Edilemeyen. <table border="1" cellpadding="0" cellspacing="0"><tbody><tr><td> Reaktif </td><td> Şirket </td><td> Cat. Hayır. </td></tr><tr><td> PBS </td><td> Invitrogen </td><td> 20012-027 </td></tr><tr><td> poli-d-lisin </td><td> Sigma </td><td> P6407 </td></tr><tr><td> Laminin </td><td> Cultrex </td><td> 3400-010-01 </td></tr><tr><td> Triton X-100 </td><td> Roche Diagnostics GmbH </td><td> 9002-93-1 </td></tr><tr><td> Normal Keçi Serum </td><td> Gibco </td><td> 16210 </td></tr><tr><td> DAPI ile VectaShield </td><td> Vektör Laboratuvarları </td><td> H-1200 </td></tr><tr><td> Ekim </td><td> Doku-Tek </td><td> 4583 </td></tr><tr><td> Tris-Baz (50 mM) </td><td> Balıkçı </td><td> BP152-5 </td></tr><tr><td> Sığır Serum Albumin </td><td> Sigma </td><td> A2153 </td></tr><tr><td> l-lizin </td><td> Sigma </td><td> L-1137 </td></tr><tr><td> % 16 PFA çözüm </td><td> Elektron Mikroskopi Bilimler </td><td> 15711 </td></tr><tr><td> Granül PFA </td><td> Elektron Mikroskopi Bilimler </td><td> 19210 </td></tr><tr><td> 24 kuyu kültür plaka </td><td> Şahin </td><td> 35-3047 </td></tr><tr><td> Keçi anti-fare Alexa konjuge antikorların </td><td> Invitrogen </td><td> --- </td></tr><tr><td> Besleme </td><td> Şirket </td><td> Cat. Hayır. </td></tr><tr><td> 12mm, No: 0 cam lamelleri </td><td> Karl Hecht Gmbh </td><td> 1105209 </td></tr><tr><td> No 1.5 cam lamel (dilim için) </td><td> VWR Bilimsel </td><td> 48393241 </td></tr><tr><td> Cam slaytlar </td><td> VWR Bilimsel </td><td> 48311-703 </td></tr></tbody></table>

quantifying synapses: an immunocytochemistry-based assay to quantify synapse number

Nörobilim en önemli hedeflerinden biri talimat sinaps oluşumu erken aşamalarında moleküler ipuçları anlamak için. Gibi sinaptik bağlantı değişiklikleri ölçmek için objektif yaklaşımlar geliştirmek zorunlu hale gelmiştir. Örnek fiksasyon itibaren, bu protokol detaylarının nasıl ayrışmış nöronal kültür ve immünsitokimya kullanarak beyin bölümlerinde de sinaps sayısı ölçmek için. Kompartman-spesifik antikorların kullanarak, presinaptik terminalleri yanı sıra postsinaptik uzmanlık siteleri etiket. Biz bu belirteçler tarafından oluşturulan sinyaller arasındaki sinaps ko noktaları olarak tanımlar. Bu colocalizations sayısı ImageJ analiz yazılımı platformu altında Puncta Analyzer (istek üzerine Bary Wark, c.eroglu @ cellbio.duke.edu yazılı) bir eklenti kullanarak miktarı. Bu protokol açıklanan sinaps tahlil seçici pre-ve postsinaptik belirteçlerinin sahip olduğunuz herhangi bir sinir doku veya kültür hazırlama uygulanabilir. Bu Sinaps tahlil, sinaptik gelişme çalışmada yaygın olarak kullanılan değerli bir araçtır.

Watch this Scientific Journal Video about Quantifying Synapses: an Immunocytochemistry-based Assay to Quantify Synapse Number at JoVE.com

Quantifying Synapses: an Immunocytochemistry-based Assay to Quantify Synapse Number

Bu protokol, ayrışmış nöronal kültür ve immünsitokimya kullanarak beyin bölümlerinde de sinaps sayısını ölçmek için nasıl ayrıntıları. Kompartman-spesifik antikorların kullanarak, presinaptik terminalleri yanı sıra postsinaptik uzmanlık siteleri etiket. Biz bu belirteçler tarafından oluşturulan sinyaller arasındaki sinaps ko noktaları olarak tanımlar.

Sinapslar miktarının: Synapse Numarası ölçmek için bir İmmünositokimya tabanlı Testi

One of the most important goals in neuroscience is to understand the molecular cues that instruct early stages of synapse formation. As such it has become ...

quantifying-synapses-an-immunocytochemistry-based-assay-to-quantify

Research

JoVE Journal

Neuroscience

35.5K Görüntüleme.  Duke University. Bu protokol, ayrışmış nöronal kültür ve immünsitokimya kullanarak beyin bölümlerinde de sinaps sayısını ölçmek için nasıl ayrıntıları. Kompartman-spesifik antikorların kullanarak, presinaptik terminalleri yanı sıra postsinaptik uzmanlık siteleri etiket. Biz bu belirteçler tarafından oluşturulan sinyaller arasındaki sinaps ko noktaları olarak tanımlar.

Video: Quantifying Synapses: an Immunocytochemistry-based Assay to Quantify Synapse Number

Neural-Colony Forming Cell Assay: An Assay To Discriminate Bona Fide Neural Stem Cells from Neural Progenitor Cells

The neurosphere assay (NSA) is one of the most frequently used methods to isolate, expand and also calculate the frequency of neural stem cells (NSCs). Furthermore, this serum-free culture system has also been employed to expand stem cells and determine their frequency from a variety of tumors and normal tissues. It has been shown recently that a one-to-one relationship does not exist between neurosphere formation and NSCs. This suggests that the NSA as currently applied, overestimates the frequency of NSCs in a mixed population of neural precursor cells isolated from both the embryonic and adult mammalian brain. This video practically demonstrates a novel collagen based semi- solid assay, the neural-colony forming cell assay (N-CFCA), which has the ability to discriminate stem from progenitor cells based on their long-term proliferative potential, and thus provides a method to enumerate NSC frequency. In the N-CFCA, colonies &ge;2 mm in diameter are derived from cells that meet all the functional criteria of a NSC, while colonies &lt; 2mm are derived from progenitors. The N-CFCA procedure can be used for cells prepared from different sources including primary and cultured adult or embryonic mouse CNS cells. Here we use cells prepared from passage one neurospheres generated from embryonic day 14 mice brain to perform N-CFCA. The cultures are replenished with proliferation medium every seven days for three weeks to allow the plated cells to exhibit their full proliferative potential and then the frequency of neural progenitor and bona fide neural stem cells is calculated respectively by counting the number of colonies that are &lt; 2mm and the ones that are &ge;2mm in reference to the number of cells that were initially plated.

This video protocol demonstrates how to discriminate and enumerate bona fide neural stem cells in a mixed population of neural precursor cells using the neural colony-forming cell assay.

Hücre Testi Şekillendirme Sinir-Koloni: Sinir Progenitör Hücreler Bona Fide Sinir Kök Hücreler Ayırım Bir Testi

The neurosphere assay (NSA) is one of the most frequently used methods to isolate, expand and also calculate the frequency of neural stem cells (NSCs). ...

Nörobilim

An Engulfment Assay: A Protocol to Assess Interactions Between CNS Phagocytes and Neurons

Phagocytosis is a process in which a cell engulfs material (entire cell, parts of a cell, debris, etc.) in its surrounding extracellular environment and subsequently digests this material, commonly through lysosomal degradation. Microglia are the resident immune cells of the central nervous system (CNS) whose phagocytic function has been described in a broad range of conditions from neurodegenerative disease (e.g., beta-amyloid clearance in Alzheimer&#8217;s disease) to development of the healthy brain (e.g., synaptic pruning)1-6. The following protocol is an engulfment assay developed to visualize and quantify microglia-mediated engulfment of presynaptic inputs in the developing mouse retinogeniculate system7. While this assay was used to assess microglia function in this particular context, a similar approach may be used to assess other phagocytes throughout the brain (e.g., astrocytes) and the rest of the body (e.g., peripheral macrophages) as well as other contexts in which synaptic remodeling occurs (e.g. ,brain injury/disease).

Microglia are the resident immune cells of the central nervous system (CNS) with a high capacity to phagocytose or engulf material in their extracellular environment. Here, a broadly applicable, reliable, and highly quantitative assay for visualizing and measuring microglia-mediated engulfment of synaptic components is described.

Bir yutulma Deneyi: CNS Fagositler ve nöronlar arasındaki etkileşimi değerlendirmek için bir protokol

Phagocytosis is a process in which a cell engulfs material (entire cell, parts of a cell, debris, etc.) in its surrounding extracellular environment and ...

Electrophysiological Method for Recording Intracellular Voltage Responses of Drosophila Photoreceptors and Interneurons to Light Stimuli In Vivo

Voltage responses of insect photoreceptors and visual interneurons can be accurately recorded with conventional sharp microelectrodes. The method described here enables the investigator to measure long-lasting (from minutes to hours) high-quality intracellular responses from single Drosophila R1-R6 photoreceptors and Large Monopolar Cells (LMCs) to light stimuli. Because the recording system has low noise, it can be used to study variability among individual cells in the fly eye, and how their outputs reflect the physical properties of the visual environment. We outline all key steps in performing this technique. The basic steps in constructing an appropriate electrophysiology set-up for recording, such as design and selection of the experimental equipment are described. We also explain how to prepare for recording by making appropriate (sharp) recording and (blunt) reference electrodes. Details are given on how to fix an intact fly in a bespoke fly-holder, prepare a small window in its eye and insert a recording electrode through this hole with minimal damage. We explain how to localize the center of a cell's receptive field, dark- or light-adapt the studied cell, and to record its voltage responses to dynamic light stimuli. Finally, we describe the criteria for stable normal recordings, show characteristic high-quality voltage responses of individual cells to different light stimuli, and briefly define how to quantify their signaling performance. Many aspects of the method are technically challenging and require practice and patience to master. But once learned and optimized for the investigator's experimental objectives, it grants outstanding in vivo neurophysiological data.

Electrophysiological Method for Recording Intracellular Voltage Responses of Drosophila Photoreceptors and Interneurons to Light Stimuli In Vivo

Sharp microelectrodes enable accurate electrophysiological characterization of photoreceptor and visual interneuron output in living Drosophila. Here we show how to use this method to record high-quality voltage responses of individual cells to controlled light stimulation. This method is ideal for studying neural information processing in insect compound eyes.

Recording Hücre içi Gerilim Yanıtları için Elektrofizyolojik Yöntem<em&gt; Drosophila</em&gt; Işık Uyaranların için Fotoreseptörler ve internöronlar<em&gt; İn Vivo</em

Voltage responses of insect photoreceptors and visual interneurons can be accurately recorded with conventional sharp microelectrodes. The method ...

Mass Histology to Quantify Neurodegeneration in Drosophila

Progressive neurodegenerative diseases like Alzheimer&#39;s disease (AD) or Parkinson&#39;s disease (PD) are an increasing threat to human health worldwide. Although mammalian models have provided important insights into the underlying mechanisms of pathogenicity, the complexity of mammalian systems together with their high costs are limiting their use. Therefore, the simple but well-established Drosophila model-system&#160;provides an alternative for investigating the molecular pathways that are affected in these diseases. Besides behavioral deficits, neurodegenerative diseases are characterized by histological phenotypes such as neuronal death and axonopathy. To quantify neuronal degeneration and to determine how it is affected by genetic and environmental factors, we use a histological approach that is based on measuring the vacuoles in adult fly brains. To minimize the effects of systematic error and to directly compare sections from control and experimental flies in one preparation, we use the &#39;collar&#39; method for paraffin sections. Neurodegeneration is then assessed by measuring the size and/or number of vacuoles that have developed in the fly brain. This can either be done by focusing on a specific region of interest or by analyzing the entire brain by obtaining serial sections that span the complete head. Therefore, this method allows one to measure not only severe degeneration but also relatively mild phenotypes that are only detectable in a few sections, as occurs during normal aging.

Mass Histology to Quantify Neurodegeneration in Drosophila

Drosophila is widely used as a model system to study neurodegeneration. This protocol describes a method by which degeneration, as determined by vacuole formation in the brain, can be quantified. It also minimizes effects due to the experimental procedure by processing and sectioning control and experimental flies as one sample.

Kitle Histoloji nörodejenerasyon belirlememize<em&gt; Drosophila</em

Progressive neurodegenerative diseases like Alzheimer&#39;s disease (AD) or Parkinson&#39;s disease (PD) are an increasing threat to human health ...

Real-time Iontophoresis with Tetramethylammonium to Quantify Volume Fraction and Tortuosity of Brain Extracellular Space

This review describes the basic concepts and protocol to perform the real-time iontophoresis (RTI) method, the gold-standard to explore and quantify the extracellular space (ECS) of the living brain. The ECS surrounds all brain cells and contains both interstitial fluid and extracellular matrix. The transport of many substances required for brain activity, including neurotransmitters, hormones, and nutrients, occurs by diffusion through the ECS. Changes in the volume and geometry of this space occur during normal brain processes, like sleep, and pathological conditions, like ischemia. However, the structure and regulation of brain ECS, particularly in diseased states, remains largely unexplored. The RTI method measures two physical parameters of living brain: volume fraction and tortuosity. Volume fraction is the proportion of tissue volume occupied by ECS. Tortuosity is a measure of the relative hindrance a substance encounters when diffusing through a brain region as compared to a medium with no obstructions. In RTI, an inert molecule is pulsed from a source microelectrode into the brain ECS. As molecules diffuse away from this source, the changing concentration of the ion is measured over time using an ion-selective microelectrode positioned roughly 100 &#181;m away. From the resulting diffusion curve, both volume fraction and tortuosity can be calculated. This technique has been used in brain slices from multiple species (including humans) and in vivo to study acute and chronic changes to ECS. Unlike other methods, RTI can be used to examine both reversible and irreversible changes to the brain ECS in real time.

This protocol describes real-time iontophoresis, a method that measures physical parameters of the extracellular space (ECS) of living brains. The diffusion of an inert molecule released into the ECS is used to calculate the ECS volume fraction and tortuosity. It is ideal for studying acute reversible changes to brain ECS.

Beyin Ekstraselüler Alanının Hacim Fraksiyonu ve Kıvrımını Nicelleştirmek için Tetrametilamonyum ile Gerçek Zamanlı İyontoforez

This review describes the basic concepts and protocol to perform the real-time iontophoresis (RTI) method, the gold-standard to explore and quantify the ...

Evaluation of Synapse Density in Hippocampal Rodent Brain Slices

In the brain, synapses are specialized junctions between neurons, determining the strength and spread of neuronal signaling. The number of synapses is tightly regulated during development and neuronal maturation. Importantly, deficits in synapse number can lead to cognitive dysfunction. Therefore, the evaluation of synapse number is an integral part of neurobiology. However, as synapses are small and highly compact in the intact brain, the assessment of absolute number is challenging. This protocol describes a method to easily identify and evaluate synapses in hippocampal rodent slices using immunofluorescence microscopy. It includes a three-step procedure to evaluate synapses in high-quality confocal microscopy images by analyzing the co-localization of pre- and postsynaptic proteins in hippocampal slices. It also explains how the analysis is performed and gives representative examples from both excitatory and inhibitory synapses. This protocol provides a solid foundation for the analysis of synapses and can be applied to any research investigating the structure and function of the brain.

A protocol for accurately identifying and analyzing synapses in hippocampal slices using immunofluorescence is outlined in this article.

Hipokampal kemirgen beyin dilimleri dansitesi Synapse değerlendirilmesi

In the brain, synapses are specialized junctions between neurons, determining the strength and spread of neuronal signaling. The number of synapses is ...

Assay Development for High Content Quantification of Sod1 Mutant Protein Aggregate Formation in Living Cells

Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease that can be caused by inherited mutations in the gene encoding copper-zinc superoxide dismutase 1 (SOD1). The structural instability of SOD1 and the detection of SOD1-positive inclusions in familial-ALS patients supports a potential causal role for misfolded and/or aggregated SOD1 in ALS pathology. In this study, we describe the development of a cell-based assay designed to quantify the dynamics of SOD1 aggregation in living cells by high content screening approaches. Using lentiviral vectors, we generated stable cell lines expressing wild-type and mutant A4V SOD1 tagged with yellow fluorescent protein and found that both proteins were expressed in the cytosol without any sign of aggregation. Interestingly, only SOD1 A4V stably expressed in HEK-293, but not in U2OS or SH-SY5Y cell lines, formed aggregates upon proteasome inhibitor treatment. We show that it is possible to quantify aggregation based on dose-response analysis of various proteasome inhibitors, and to track aggregate-formation kinetics by time-lapse microscopy. Our approach introduces the possibility of quantifying the effect of ALS mutations on the role of SOD1 in aggregate formation as well as screening for small molecules that prevent SOD1 A4V aggregation.

We describe a method to quantify the aggregation of misfolded proteins. Our protocol details lentiviral induced stable cell line generation, automated confocal imaging, and image analysis of protein aggregates. As an illustrative application, we studied the effect of small molecules in promoting SOD1 aggregation in a time- and dose-dependent manner.

Yüksek içerik miktar Sod1 canlı hücreler Mutant Protein toplama oluşumu için tahlil geliştirme

Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease that can be caused by inherited mutations in the gene encoding copper-zinc ...

Visualization of Thalamocortical Axon Branching and Synapse Formation in Organotypic Cocultures

Axon branching and synapse formation are crucial processes for establishing precise neuronal circuits. During development, sensory thalamocortical (TC) axons form branches and synapses in specific layers of the cerebral cortex. Despite the obvious spatial correlation between axon branching and synapse formation, the causal relationship between them is poorly understood. To address this issue, we recently developed a method for simultaneous imaging of branching and synapse formation of individual TC axons in organotypic cocultures.
This protocol describes a method which consists of a combination of an organotypic coculture and electroporation. Organotypic cocultures of the thalamus and cerebral cortex facilitate gene manipulation and observation of axonal processes, preserving characteristic structures such as laminar configuration. Two distinct plasmids encoding DsRed and EGFP-tagged synaptophysin (SYP-EGFP) were co-transfected into a small number of thalamic neurons by an electroporation technique. This method allowed us to visualize individual axonal morphologies of TC neurons and their presynaptic sites simultaneously. The method also enabled long-term observation which revealed the causal relationship between axon branching and synapse formation.

This protocol describes a method for simultaneous imaging of thalamocortical axon branching and synapse formation in organotypic cocultures of the thalamus and cerebral cortex. Individual thalamocortical axons and their presynaptic terminals are visualized by a single cell electroporation technique with DsRed and GFP-tagged synaptophysin.

Görselleştirme Thalamocortical Axon dallanma ve sinaps oluşumunda Organotypic Cocultures

Axon branching and synapse formation are crucial processes for establishing precise neuronal circuits. During development, sensory thalamocortical (TC) ...

Electrophysiological Investigations of Retinogeniculate and Corticogeniculate Synapse Function

The lateral geniculate nucleus is the first relay station for the visual information. Relay neurons of this thalamic nucleus integrate input from retinal ganglion cells and project it to the visual cortex. In addition, relay neurons receive top-down excitation from the cortex. The two main excitatory inputs to the relay neurons differ in several aspects. Each relay neuron receives input from only a few retinogeniculate synapses, which are large terminals with many release sites. This is reflected by the comparably strong excitation, the relay neurons receive, from retinal ganglion cells. Corticogeniculate synapses, in contrast, are simpler with few release sites and weaker synaptic strength. The two synapses also differ in their synaptic short-term plasticity. Retinogeniculate synapses have a high release probability and consequently display a short-term depression. In contrast, corticogeniculate synapses have a low release probability. Corticogeniculate fibers traverse the reticular thalamic nuclei before entering the lateral geniculate nucleus. The different locations of the reticular thalamic nucleus (rostrally from the lateral geniculate nucleus) and optic tract (ventro-laterally from the lateral geniculate nucleus) allow stimulating corticogeniculate or retinogeniculate synapses separately with extracellular stimulation electrodes. This makes the lateral geniculate nucleus an ideal brain area where two excitatory synapses with very different properties impinging onto the same cell type, can be studied simultaneously. Here, we describe a method to investigate the recording from relay neurons and to perform detailed analysis of the retinogeniculate and corticogeniculate synapse function in acute brain slices. The article contains a step-by-step protocol for the generation of acute brain slices of the lateral geniculate nucleus and steps for recording activity from relay neurons by stimulating the optic tract and corticogeniculate fibers separately.

Here, we present protocols for the preparation of acute brain slices containing the lateral geniculate nucleus and the electrophysiological investigation of retinogeniculate and corticogeniculate synapses function. This protocol provides an efficient way to study synapses with the high-release and low-release probability in the same acute brain slices.

Retinogeniculate ve Kortikogeniculate SYNAPSE fonksiyonunun elektrofizyolojik Incelemeleri

The lateral geniculate nucleus is the first relay station for the visual information. Relay neurons of this thalamic nucleus integrate input from retinal ...

A Preclinical Model to Assess Brain Recovery After Acute Stroke in Rats

The purpose of this study was to establish and validate an animal brain ischemia model in the recovery and sequela stages. A middle cerebral artery occlusion/reperfusion (MCAO/R) model in male Sprague-Dawley rats was chosen. By changing the rat&#39;s weight (260&#8722;330 g), the thread bolt type (2636/2838/3040/3043) and the brain infarct time (2-3 h), a higher Longa&#39;s score, a larger infarct volume and a greater model success ratio were screened using the Longa&#39;s score and TTC staining. The optimum model condition (300 g, 3040 thread bolt, 3 h brain infarct time) was acquired and used in a 1-90 day observation period after reperfusion via assessment of sensorimotor functions and infarct volume. At these conditions, the bilateral asymmetry test had a significant difference from 1 to 90 days, and the grid-walking test had a significant difference from 1 to 60 days; both differences could be a suitable sensorimotor functional test. Thus, the most appropriate condition of a novel rat model in the recovery and sequela stages of brain ischemia was found: 300 g rats that underwent MCAO with a 3040 thread bolt for a 3 h brain infarct and then reperfused. The appropriate sensorimotor functional tests were a bilateral asymmetry test and a grid-walking test.

The&#160;purpose of this study is to establish and validate an animal model for research in the recovery and sequela stages of brain ischemia by testing brain infarction and sensorimotor function after middle cerebral artery occlusion/reperfusion (MCAO/R) after 1-90 days in rats.

Sıçanlarda Akut İnme Sonrası Beyin İyileşmesini Değerlendiren Bir Preklinik Model

The purpose of this study was to establish and validate an animal brain ischemia model in the recovery and sequela stages. A middle cerebral artery ...