JoVE Logo
Faculty Resource Center

Sign In

High-Throughput Transcriptome Analysis for Investigating Host-Pathogen Interactions (Video) | JoVE

DOI :

10.3791/62324-v

March 5th, 2022

March 5th, 2022

3,599 Views

1Laboratory of Pathology of Infectious Diseases, Department of Pathology, Medical School, University of São Paulo, 2Scientific Platform Pasteur USP, 3Department of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, 4Hospital Israelita Albert Einstein

The protocol presented here describes a complete pipeline to analyze RNA-sequencing transcriptome data from raw reads to functional analysis, including quality control and preprocessing steps to advanced statistical analytical approaches.

-- Views

Related Videos

article

Single Cell Measurements of Vacuolar Rupture Caused by Intracellular Pathogens

article

A Comparative Approach to Characterize the Landscape of Host-Pathogen Protein-Protein Interactions

article

Nanomechanics of Drug-target Interactions and Antibacterial Resistance Detection

article

Imaging InlC Secretion to Investigate Cellular Infection by the Bacterial Pathogen Listeria monocytogenes

article

Investigating the Effects of Probiotics on Pneumococcal Colonization Using an In Vitro Adherence Assay

article

A Microscopic Phenotypic Assay for the Quantification of Intracellular Mycobacteria Adapted for High-throughput/High-content Screening

article

High-throughput Screening for Broad-spectrum Chemical Inhibitors of RNA Viruses

article

Co-Culture of Murine Small Intestine Epithelial Organoids with Innate Lymphoid Cells (Video) | JoVE

article

A High-Throughput Multiplexed Screening for Type 1 Diabetes, Celiac Diseases, and COVID-19 (Video) | JoVE

article

A Novel High-Throughput Ex Vivo Ovine Skin Wound Model for Testing Emerging Antibiotics (Video) | JoVE

JoVE Logo

Privacy

Terms of Use

Policies

Research

Education

ABOUT JoVE

Copyright © 2024 MyJoVE Corporation. All rights reserved