A protocol for the quantitative evaluation of 3D cell migration within and into the interface of granular hydrogels is presented here.
Granular hydrogel scaffolds hold significant potential in regenerative medicine, functioning either as carriers for cell delivery or as interfaces for tissue integration. This article introduces two novel approaches for quantifying cell migration within and into granular hydrogels, highlighting the distinct applications of these scaffolds. First, a cell monolayer interface assay that simulates tissue growth into granular hydrogels for integration purposes is presented. Second, a spheroid-based assay is described, designed to track cell movement within the hydrogel matrix, specifically suited for applications involving cell delivery. Both methods enable precise and controlled measurements of cell migration, providing a comprehensive toolkit for researchers utilizing granular hydrogel scaffolds. The motivation for these methods stems from the need for tailored control over cell migration within the scaffold to align with specific applications. By optimizing and standardizing these quantification techniques, researchers can iteratively refine granular hydrogel properties, ensuring their effectiveness in diverse regenerative medicine contexts. This robust set of quantitative tools offers new opportunities to enhance granular hydrogel scaffolds, advancing their use in both cell delivery and tissue integration applications.
Biomaterials for therapeutic applications are increasingly evolving towards more complex and relevant models of cell environments to study tissue integration. Biomaterial scaffolds provide a three-dimensional (3D) structure for cell growth and aim to mimic a desired tissue1,2. Three-dimensional cell culture models include natural matrices and synthetic scaffolds that provide cells with further complexity via haptotactic or chemotactic cues3,4. Traditional hydrogel scaffolds are crosslinked in bulk, yielding a nanoporous mesh that allows diffusion of small molecules5,6, but requires degradation for cell-scale migration into a tissue area in need of repair7. Granular hydrogels are a subset of biomaterials that have a high potential for clinical translation due to their biocompatibility, ability to conform to irregular shapes, and, in many cases, their injectability8,9. Their building-block nature provides the advantage of cell-scale porosity to enhance tissue infiltration and angiogenesis as well as modularity, which allows for the addition of heterogeneous cues for cell behavior10,11,12. Understanding cell response and movement within a 3D scaffold is vital for physiological relevance in all applications using biomaterials for tissue integration.
Studying tissue ingrowth in three dimensions, however, has proven to be difficult to accomplish with quantitative accuracy. The expanded complexity of a 3D environment requires in vitro models of cell migration that can not only provide insight into cell behavior but also material condition optimization. Previously published reports of 3D granular scaffold cell migration have used topical seeding to explore cell behavior, reporting infiltration into the porous structure and cell morphology13 and others spheroid sprouting14,15, measuring outgrowth length and number of sprouts. Topical seeding migration lengths may be unevenly influenced by gravity forces, and due to microscopy limitations, results cannot be longitudinal. The spheroid sprouting method has been limited to 2D quantification via maximal projection, which is unable to capture the mechanism of controlled invasion. Both methods are measured in an xy-plane, which lacks the nuance necessary to fully recapitulate 3D cellular movement and scaffold infiltration.
This protocol describes two approaches for quantifying cell migration, such as in vitro infiltration into the porous 3D granular hydrogel scaffolds, specifically using Microporous Annealed Particle (MAP) scaffolds16,17,18,19. The purpose of the following methods is to study cell behavior in granular gels by controlling the directionality of their migration for three-dimensional analysis. The first, monolayer-based ascending migration assay (MAMA) approach, is a simplified model of endogenous cell integration that illustrates uniform cell-material interactions and serves as a platform to represent the initial environment in which cells interface with granular hydrogels as well as to isolate individual behavior prior to infiltration of the scaffold. The second, called the parallel layered outward spheroid migration assay (PLOSMA) method, is a 3D cell spheroid migration assay, that explores cell movement when fully surrounded by a complex scaffold environment and models cell movement after delivery, as well as movement after cells have fully entered a granular gel.
Both methods are quantifiable by 3D image analysis and can be applied to studying and optimizing material-cell interactions using longitudinal timepoints for regenerative medicine and tissue engineering applications, where promoting or restricting cell movement is within the design criteria. Additionally, these methods take advantage of plate centrifugation for uniform multi-well assay preparation.
The details of the reagents and the equipment used in the study are listed in the Table of Materials.
1. Granular hydrogel preparation
NOTE: MAP particles used throughout this protocol are 3.2 wt% w/v gel with 45.88 mg/mL PEG-MAL (10 kDa), 0.82 mg/mL RGD, 8.06 mg/mL MethMal19, and 5.62 mg/mL MMP-2 degradable crosslinker. The mechanical stiffness of the gel is 15-20 kPa to match dermal stiffness17.
2. Monolayer-based Ascending Migration Assay (MAMA) method: Cell culture and imaging
NOTE: Cells were imaged using the FITC channel (488 nm). The dye used for the cells had an excitation at 492 nm and an emission at 517 nm. 10x magnification provides increased detail over 4x magnification, but either can be used.
3. Monolayer-based Ascending Migration Assay (MAMA) method: 3D image analysis
4. Parallel Layered Outward Spheroid Migration Assay (PLOSMA)method: Cell culture and hanging droplet culture for 3D spheroids
NOTE: This protocol describes cell culture and hanging drop culture adapted from the protocol authored by Nandi et al.14.
5. Parallel Layered Outward Spheroid Migration Assay (PLOSMA) method: Seeding cell spheroids onto granular hydrogel
NOTE: The following process is summarized in Figure 4A.
6. Parallel Layered Outward Spheroid Migration Assay (PLOSMA) method: Confocal imaging of spheroids
NOTE: The ease of imaging depends on the imaging system. Locate the spheroid within the well at a low exposure time. The cells were imaged using the FITC channel (488 nm). The dye used for the cells had an excitation at 492 nm and an emission at 517 nm. 10x magnification provides increased detail over 4x magnification.
7. Parallel Layered Outward Spheroid Migration Assay (PLOSMA) method: 3D image analysis
This protocol aims to detail the necessary steps for two novel granular scaffold migration assays. The MAMA method can be utilized to evaluate cellular infiltration at a tissue interface. Granular hydrogels are a more complex system than bulk hydrogels and, therefore, are inherently more complex to process for migration9,20. It is important to understand the stepwise process outlined in Figure 1. Each step builds on the next and has been optimized in this protocol. Seeding HDFs at a density of 120,000 cells/cm2 will result in at least 80% confluence overnight (FigureΒ 1A), and these non-fluorescent cells are best tagged with cell tracking dye the day of the experiment to maximize imaging potential (FigureΒ 1B). This protocol matches the lower centrifugal force used in HDF passaging to maintain cell viability. Due to the angle that is produced for a single centrifugation step, it is necessary to flip the plate 180Β° to ensure gel shifts to fully cover the bottom surface of the wells (FigureΒ 1C). Allowing cells to recover in the incubator for 30 min after annealing (FigureΒ 1D) will maintain cell viability and result in optimal migration (FigureΒ 1E). A large area of a 96-well plate can be imaged with a 4x objective and matched from timepoint 0-24 h (Figure 2A,B) to widely assess cell behavior. Processing the resulting z-stack images in the analysis software provides advanced analyses for multiple large datasets in an easy-to-use interface. This protocol summarizes the steps to create datasets for cell height, or position Z, at each timepoint visualized with the representative images in Figure 2B,C. Analysis of the processed data is seen in Figure 3A, visualized using the mean of median heights and their standard deviation of each timepoint, and fold change height from non-migrating cells at t = 0 h is shown in Figure 3B. The underlying data of this method is typically non-normally distributed, so medians are more robust measures for comparison and are therefore used to summarize the data.
Likewise, the PLOSMA method can be utilized to evaluate the motility of delivered cells within a 3D granular hydrogel scaffold. Figure 4A outlines the steps to the PLOSMA method, and it is especially important to seed the spheroid in the center of the well. Centering the spheroid in the field of view is recommended but depends on the microscope's capabilities. Figure 4B displays representative images of spheroid spreading for t = 0 h and t = 24 h taken at 10x magnification in the FITC channel (488 nm). In the software, an origin reference frame can be created and adjusted to each z-stack (Figure 5A,B). The software can track radial distance from that origin reference frame and export it as the desired dataset (Figure 5C). Figure 6A shows a representative image of the 3D rendering of the t = 24 h spheroid, while Figure 6B shows the software's Spots function. An example of the processed data is shown in Figure 7. Figure 7A represents the average distance traveled from the center normalized to the Day 0 distances. FigureΒ 7B isolates distances traveled in just the z-plane since that is the direction the PLOSMA method aims to study.
Figure 1:Β Monolayer-based Ascending Migration Assay cell culture and imaging. Schematic of major steps in cell and gel processing for MAMA. (A) Cells are grown to confluence overnight, and (B) cell tracking dye is added just prior to the addition of granular gel. The scaffold is assembled via (C) plate centrifugation and stabilized with (D) photo-crosslinking. Imaging at multiple timepoints allows (E) visualization of upward cell migration. Please click here to view a larger version of this figure.
Figure 2: MAMA image processing. Representative images of image processing. Top and side view comparison of raw confocal images at (A) t = 0 and (B) t = 24 h in the FITC channel on 4x magnification. (B) Top and side view comparison of the processed cell position Z heights at (C) t = 0 and (D) t = 24 h. Processing for 24 h includes subtraction of median non-migrating z-heights. Scale bars = 500 Β΅m. Abbreviations: MAMA = Monolayer-based Ascending Migration Assay. Please click here to view a larger version of this figure.
Figure 3: MAMA cell migration output analysis. (A) Median position Z and standard deviation of cell heights in each replicate (n = 6) at timepoints t = 0 (27.0 Β΅m Β± 1.4 Β΅m) and t = 24 h (46.6 Β΅m Β± 10.8 Β΅m). (B) Migration of cells at 24 h normalized to 0 h and reported as fold change (1.8 Β± 0.4). Please click here to view a larger version of this figure.
Figure 4: Parallel Layer Outward Spheroid Migration Assay (PLOSMA) cell culture and imaging. (A) Schematic describing steps of scaffold layering. (B) Max intensity projections of spheroid taken at 0 and 24 h. Images were taken via confocal fluorescent microscopy in the FITC channel (488 nm) at 10x magnification. Scale bars = 200 Β΅m. Abbreviations: PLOSMA = Parallel Layer Outward Spheroid Migration Assay. Please click here to view a larger version of this figure.
Figure 5: Creating a new origin reference frame. (A) The new origin reference frame button outlined with a red box. (B) The new origin is set to be in the center of the spheroid in all three dimensions. (C) Output metrics shown are the distances of cell surfaces from the origin reference frame, which describes how far cells have migrated from the center. Scale bar = 120 Β΅m. Please click here to view a larger version of this figure.
Figure 6: 3D renderings of the embedded spheroid at 24 h. (A) Processed spheroid in 3D space. (B) The center of the same spheroid was determined using the origin reference frame function in IMARIS, and cell spread is color-coded by distance from the origin. Please click here to view a larger version of this figure.
Figure 7: Example outputs for PLOSMA. (A) Example PLOSMA results showing distance traveled in Β΅m. The average distance traveled was 240.8 Β΅m Β± 36.87 Β΅m. (B) Z-height fold change (tf/t0) of spheroid sprouting. The average fold change was 3.82 Β± 1.495. Please click here to view a larger version of this figure.
This protocol describes two in vitro models for characterizing cell migration in 3D for wound healing and tissue integration. The first model, the monolayer-based migration assay, relies on properly attached and confluent cells. This protocol was developed with a fibroblast cell type and optimized at a seeding density of 1,20,000 cells/cm2. This density allows cells to grow overnight to at least 80% confluency evenly across the bottom of the well plate. This step ensures migration in the z-direction within at least 24 h; if confluency is too low upon the addition of the gel layer, cells may continue to spread across the tissue culture plastic as well as into the gel, resulting in a non-uniform, slowed migration pattern, which was observed during optimization. Uneven migration heights may still be observed in areas of less dense cells, even at 80% confluency. Well replicates will reduce the noise of these cell behaviors. Overly confluent cells can cause the lifting of cells during the centrifugation period and potentially cell death. This variability is addressed by seeding at a consistent number of cells and by capturing a consistent image area to allow for appropriate data comparisons. To the author's knowledge, plate centrifugation has not been published for gel flattening, but centrifugation is commonly used for cell passaging and handling biomatter21,22. Adjusting the speed to match passaging speeds will maintain cell viability for further optimal cell processing.
The primary challenge in this method is maximizing imaging resolution and depth while minimizing imaging time to ensure the best analysis. Green cell tracking dye is sufficiently bright to image a 96-well with a 5 Β΅m or less step size and down to 1000 ms of exposure time. Lowering the exposure time reduces the amount of time cells are not in incubation conditions, but also reduces resolution. These parameters must be optimized on an individual microscope basis, but variability is reduced by ensuring all images are captured with the same settings within one study.
An important note for the analysis of MAMAs is that it requires eliminating the cells at or below the monolayer height to ensure only migrating cells are considered for statistical tests. Accordingly, the medians of replicate wells are reported due to the non-Gaussian distribution nature of the cell positions after filtering. Comparison between groups can be visualized with a histogram, and medians can be statistically analyzed with a non-parametric test.
Despite these challenges, the monolayer-based upward migration method is, at its simplest, a reproducible assay for 3D cell infiltration of porous scaffolds. To study the mechanistic effects of cell migration, ensure that parameters fit the cell type being studied. This may include the addition of chemotactic or haptotactic components, within the gel or in the media. Human dermal fibroblast complete media include migratory chemokines, but other cell types that use more specific cues require adaptation of the assay accordingly. This assay does lend itself to testing multiple types of variables; however, the scope of these is not covered in this protocol. The MAMA provides a physiologically relevant environment analogous to cell movement from bulk tissue into an injected porous hydrogel in vivo.
For the PLOSMA method, placement of the spheroids in the center of the scaffold is critical to successful imaging and meaningful cell migration in three dimensions. The exact seeding of the spheroid in the center of the gel is dependent on the user. To this end, steadying the pipette at the barrel with the user's non-dominant hand assists in centering, and the effectiveness of the seeding position can be confirmed using brightfield or fluorescent microscopy. An off-center spheroid can be remedied by a second attempt with a new spheroid, either on the same scaffold or on a new scaffold. For this reason, the authors recommend creating more spheroids than necessary and preparing more MAP gel than necessary.
The second layer centrifugation step ensures that the spheroid is (1) covered evenly by the gel and (2) able to spread evenly upward and downward into the gel, which is crucial to studying delivered cells. Centrifugation can also cause the spheroid to move from the center toward the edges of the well, and while this protocol limits this phenomenon by optimizing centrifugation steps and volume of the gel used for each layer (15 Β΅L) for even distribution, it does not completely eliminate its movement. The exact centrifugation speed and timing required to reduce spheroid movement may need to be adjusted according to the model of the centrifuge; however, the specification described in this protocol may be used as a benchmark for individual optimization. Another approach is to allow the spheroids 2 h of incubation time to attach to the scaffold before adding the second layer of gel. Spheroid movement is mitigated particularly well when both strategies are implemented. Finally, because of the multi-step centrifugation process, this method may not be suitable for less hardy cell lines.
Apart from the logistics of plating the spheroids in the PLOSMA method, there are limitations during image acquisition. The spheroid can be imaged using 4x or 10x magnification, but for best results, use at least a 10x magnification and reduce the step size of the z-stacks to 2-5 Β΅m. Magnification should be consistent throughout the study. Imaging time increases with higher resolution, so limit the number of samples in each well plate (4-8 wells per plate) to minimize time outside of the incubator. A live-imaging setup could also improve tracking and provide greater insights.
Because granular hydrogels have unique topology and design parameters that include inherent volume, porosity, mechanical strength, and, in some cases, bioactivity, it is necessary to study cell behavior in relation to these aspects with as much fidelity as possible. The PLOSMA method is designed to model cell movement after delivery or after cells have fully entered a granular gel. Because the cells are forced to migrate through the pores inherent in granular hydrogel geometry, the PLOSMA method effectively isolates porosity as an influence on cell behavior. Potential applications for this assay are cell delivery in situ and tissue integration within a granular scaffold, particularly in the wound healing space23.
Both protocols were developed with primary human dermal fibroblasts due to the role of fibroblast migration in tissue repair and remodeling4,24, however, the migratory behavior of any adherent cells may be measured in response to alteration of the porous scaffold - including additions of growth factors and surface/bulk composition of gel. These changes may require tailoring of these assays for appreciable results. Parameters requiring further optimization include cell seeding density, experiment duration, and/or analysis pipeline. IMARIS is a powerful imaging analysis tool that is utilized for cell migration analysis and has capabilities beyond what is outlined here, which include classifying all objects within a selected 'Surface' into sets based on various properties such as surface area, volume, intensity, and distance from other created surfaces. There are many online resources to determine further analysis methods.
The two methods outlined here not only address the initial state of tissue introduction to a granular material in a physiological way, but also the subsequent cell response when fully embedded within the material. As with all migration assays, the cells present are capable of proliferating in parallel to movement, however the design of the described assays does not disrupt proliferation and thus ensures no undue impact on analysis. Both methods are compatible with endpoint staining in addition to longitudinal imaging, which uses PFA fixation to detect metrics such as cytoskeleton, collagen deposition, proliferation, and more. The use of the outlined methods moves towards a more accurate spatio-temporal representation of 3D cell migration that utilizes cell infiltration as a measurable parameter in contrast to previous methods1,6,14,15,25,26,27.
The authors have no conflicts of interest to disclose.
Funding for this work was partially supported through the US National Institutes of Health High Priority, Short-Term Project Award (1R56DK126020-01) and a philanthropic gift from the Kurtin Trust. J.T. was funded by the National Science Foundation Graduate Research Fellowship.Β Figure schematics created with BioRender.com.
Name | Company | Catalog Number | Comments |
Alexa Fluor 647 Phalloidin | ThermoFisher | A22287 | |
Bovine Serum Albumin | VWR International | 332 | |
CellTracker Green CMFDS Dye, 1 mg | ThermoFisher | C2925 | 20 x 50 ug units, 492/517 nm |
Centrifuge | ThermoFisher | 75016085 | ST Plus Series |
Clear 96 well plate | MilliPore Sigma | CLS3997-50EA | |
Dimethyl Sulfoxide | Fisher Scientific | MT-25950CQC | 250 mL |
Fibroblast Basal Medium | ATCC | PCS-201-030 | 480 mL, phenol-red-free |
Fibroblast Growth Kit - Low Serum | ATCC | PCS-201-041 | 7.5 mM L-glut,5 ng/mL rh FGF basic, 5 ug/mL rh Insulin, 1 ug/mL Hydrocortisone, 50 ug/mL Ascorbic acid, 2% FBS |
FIJI (ImageJ) | NIH | Public access download | |
Human Dermal Fibroblasts | ATCC | PCS-201-012 | Adult human dermal fibroblasts |
ImageXpress Micro Confocal | Molecular Devices | Spinning Disc confocal microscope with 4x, 10x magnifications | |
IMARIS | Oxford Instruments | 3/4D Imaged Visualizaiton and Analysis Software, Proprietary | |
Incubator | ThermoFisher | Finnpipette F2 Variable volume Pipettes | HeraCell Vios 160i CO2 Incubator, 165L |
M-20 Microplate Swinging Bucket Rotor | ThermoFisher | 75003624 | |
Methylcellulose | Fisher Scientific | 9004-67-5 | Lab grade, powder form |
Microcentrifuge tube | Fisherbrand | 05-408-129 | 1.5 mL microcentrifuge tubes |
Paraformaldehyde (4%) | Alfa Aesar | AAJ19943K2 | For fixingΒ |
Petri dish | Corning | 08-757-100A | Bacteriological Petri Dishes with Lid 35 x 10 mm |
Pipettes | ThermoFisher | 4642080 | Finnpipette F2 Variable volume Pipettes |
Sterile PBS | Gibco | 10010-023 | |
Triton-X | Fisher Scientific | 327371000 |
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