Name: rapid fabrication of custom microfluidic devices for research and educational applications
Uploaded: 2019-11-20T13:00:00
Description: Watch this Scientific Journal Video about Rapid Fabrication of Custom Microfluidic Devices for Research and Educational Applications at JoVE.com

The work in this manuscript was supported in part by the National Science Foundation (NSF) (Grant No. CBET-1553826) (and associated ROA supplement) and the National Institutes of Health (NIH) (Grant No. R35GM124935) to J.Z., and the Notre Dame Melchor Visiting Faculty fund to F.O. We would like to thank Jenna Sjoerdsma and Basar Bilgi&#231;er for providing mammalian cells and culture protocols and Fabio Sacco for assistance with supplementary figures.

1. Design
<ol>
	<li>Identify an application for the devices and list the channel/chamber components that will be required. 
	NOTE: All devices will require input and output channels. Devices used for microscopy will require an imaging chamber. More complex devices will require channels and chambers situated in multiple layers.</li>
	<li>Start by hand-drawing each layer, considering how the device&#8217;s functionality is affected by the superposition of the layers.</li>
	<li>Draw the final designs on a computer us...

<ol>
	<li>Xia, Y., Whitesides, G. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=SOFT+LITHOGRAPHY.">SOFT LITHOGRAPHY.</a> Annual Review of Materials Science. 28 (1), 153-184 (1998).</li><li>Beebe, D. J., Mensing, G. A., Walker, G. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Physics+and+Applications+of+Microfluidics+in+Biology.">Physics and Applications of Microfluidics in Biology.</a> Annual Review of Biomedical Engineering. 4 (1), 261-286 (2002).</li><li>Whitesides, G. M., Ostuni, E., Takayama, S., Jiang, X., Ingber, D. E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Soft+Lithography+in+Biology+and+Biochemistry.">Soft Lithography in Biology and Biochemistry.</a> Annual Review of Biomedical Engineering. 3 (1), 335-373 (2001).</li><li>Sackmann, E. K., Fulton, A. L., Beebe, D. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+present+and+future+role+of+microfluidics+in+biomedical+research.">The present and future role of microfluidics in biomedical research.</a> Nature. 507 (7491), 181-189 (2014).</li><li>Berthier, E., Young, E. W. K., Beebe, D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Engineers+are+from+PDMS-land,+Biologists+are+from+Polystyrenia.">Engineers are from PDMS-land, Biologists are from Polystyrenia.</a> Lab on a Chip. 12 (7), 1224 (2012).</li><li>Zhang, B., Korolj, A., Lai, B. F. L., Radisic, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Advances+in+organ-on-a-chip+engineering.">Advances in organ-on-a-chip engineering.</a> Nature Reviews Materials. 3 (8), 257-278 (2018).</li><li>Bartholomeusz, D. A., Boutte, R. W., Andrade, J. D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Xurography:+rapid+prototyping+of+microstructures+using+a+cutting+plotter.">Xurography: rapid prototyping of microstructures using a cutting plotter.</a> Journal of Microelectromechanical Systems. 14 (6), 1364-1374 (2005).</li><li>Mart&#237;nez-Hern&#225;ndez, K. J., Rovira-Figueroa, N. D., Ontiveros, F. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> Implementation and Assessment of Student-Made Microfluidic Devices in the General Chemistry Laboratory. , (2016).</li><li>Levis, M., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Microfluidics+on+the+fly:+Inexpensive+rapid+fabrication+of+thermally+laminated+microfluidic+devices+for+live+imaging+and+multimodal+perturbations+of+multicellular+systems.">Microfluidics on the fly: Inexpensive rapid fabrication of thermally laminated microfluidic devices for live imaging and multimodal perturbations of multicellular systems.</a> Biomicrofluidics. 13 (2), 024111 (2019).</li><li>Subramaniam, A., Sethuraman, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Chapter+18+-+Biomedical+Applications+of+Nondegradable+Polymers.">Chapter 18 - Biomedical Applications of Nondegradable Polymers.</a> Natural and Synthetic Biomedical Polymers. , 301-308 (2014).</li><li>Yuen, P. K., Goral, V. N. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Low-cost+rapid+prototyping+of+flexible+microfluidic+devices+using+a+desktop+digital+craft+cutter.">Low-cost rapid prototyping of flexible microfluidic devices using a desktop digital craft cutter.</a> Lab Chip. 10 (3), 384-387 (2010).</li><li>Oya, K., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Surface+Characteristics+of+Polyethylene+Terephthalate+(PET)+Film+Exposed+to+Active+Oxygen+Species+Generated+via+Ultraviolet+(UV)+Lights+Irradiation+in+High+and+Low+Humidity+Conditions.">Surface Characteristics of Polyethylene Terephthalate (PET) Film Exposed to Active Oxygen Species Generated via Ultraviolet (UV) Lights Irradiation in High and Low Humidity Conditions.</a> Journal of Photopolymer Science and Technology. 27 (3), 409-414 (2014).</li><li>Narciso, C. E., Contento, N. M., Storey, T. J., Hoelzle, D. J., Zartman, J. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Release+of+Applied+Mechanical+Loading+Stimulates+Intercellular+Calcium+Waves+in+Drosophila+Wing+Discs.">Release of Applied Mechanical Loading Stimulates Intercellular Calcium Waves in Drosophila Wing Discs.</a> Biophysical Journal. 113 (2), 491-501 (2017).</li><li>Suh, Y. K., Kang, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+Review+on+Mixing+in+Microfluidics.">A Review on Mixing in Microfluidics.</a> Micromachines. 1 (3), 82-111 (2010).</li><li>Jahn, A., Vreeland, W. N., Gaitan, M., Locascio, L. E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Controlled+Vesicle+Self-Assembly+in+Microfluidic+Channels+with+Hydrodynamic+Focusing.">Controlled Vesicle Self-Assembly in Microfluidic Channels with Hydrodynamic Focusing.</a> Journal of the American Chemical Society. 126 (9), 2674-2675 (2004).</li><li>Weibel, D., Whitesides, G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Applications+of+microfluidics+in+chemical+biology.">Applications of microfluidics in chemical biology.</a> Current Opinion in Chemical Biology. 10 (6), 584-591 (2006).</li><li>Chen, X., Li, T., Shen, J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=CO2+Laser+Ablation+of+Microchannel+on+PMMA+Substrate+for+Effective+Fabrication+of+Microfluidic+Chips.">CO2 Laser Ablation of Microchannel on PMMA Substrate for Effective Fabrication of Microfluidic Chips.</a> International Polymer Processing. 31 (2), 233-238 (2016).</li><li>Chen, X., Shen, J., Zhou, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Rapid+fabrication+of+a+four-layer+PMMA-based+microfluidic+chip+using+CO2-laser+micromachining+and+thermal+bonding.">Rapid fabrication of a four-layer PMMA-based microfluidic chip using CO2-laser micromachining and thermal bonding.</a> Journal of Micromechanics and Microengineering. 26 (10), 107001 (2016).</li></ol>

While microfluidics are increasingly present in the toolbox of laboratories around the world, the pace of adoption has been disappointing, given the potential for its positive impact16. Low cost and high efficiency of microfluidic device fabrication are essential to accelerate adoption of this technology in the average research laboratory. The method described here uses multiple film layers to create two and three-dimensional devices at a fraction of the time and cost required by lithographic meth...

Microfluidics enables fluid control at small scales, with volumes ranging from microliters (1 x 10-6 L) to picoliters (1 x 10-12 L). This control has been made possible in part due to the application of microfabrication techniques borrowed from the microprocessor industry1. The use of micro-sized networks of channels and chambers allows the user to take advantage of the distinct physical phenomena characteristic of small dimensions. For example, at the micrometer scale, fluids can be manipulated using laminar flow, where viscous forces dominate inertial forces. As a result, diffusive transport becomes the prominent feature of microfluidics, and can be studied quantitatively and experimentally. These systems can be properly understood using Fick&#8217;s laws, Brownian motion theory, the heat equation, and/or the Navier-Stokes equations, which are important derivations in the fields of fluid mechanics and transport phenomena2.
Because many groups in the biological sciences study complex systems at the microscopic level, it was originally thought that microfluidic devices would have an immediate and significant impact on research applications in biology2,3. This is due to diffusion being dominant in the transport of small molecules across membranes or within a cell, and the dimensions of cells and microorganisms are an ideal match for sub-millimeter systems and devices. Therefore, there was significant potential for enhancing the way in which cellular and molecular experimentation is conducted. However, wide adoption of microfluidic technologies by biologists has lagged behind expectations4. A simple reason for the lack of technology transfer may be the disciplinary boundaries separating engineers and biologists. Custom device design and fabrication have remained just outside of the capabilities of most biological research groups, making them dependent on external expertise and facilities. Lack of familiarity with potential applications, cost, and the time required for design-iteration are also significant barriers for new adopters. It is likely that these barriers have had the effect of disrupting innovation and preventing the widespread application of microfluidics to address challenges in the biological sciences.
A case in point: Since the late 1990&#8217;s soft-photolithography has been the method of choice for the fabrication of microfluidic devices. PDMS (polydimethylsiloxane, a silicone-based organic polymer) is a widely used material because of its physical properties, such as transparency, deformability, and biocompatibility5. The technique has enjoyed great success, with lab-on-a-chip and organ-on-a-chip devices continually being developed on this platform6. Most of the groups working on these technologies, however, are found in engineering departments or have strong ties to them4. Lithography usually requires clean-rooms for the fabrication of molds and specialized bonding equipment. For many groups, this makes standard PDMS devices less than ideal due their capital costs and lead-time, particularly when there is a need to make repeated design modifications. Furthermore, the technology is mostly inaccessible to the average biologist and to students without access to specialized engineering laboratories. It has been proposed that for microfluidic devices to be widely adopted, they must mimic some of the qualities of materials commonly used by biologists. For example, polystyrene used for cell culture and bioassays is inexpensive, disposable, and amenable to mass production. In contrast, industrial manufacturing of PDMS-based microfluidics has never been realized because of its mechanical softness, surface treatment instability, and gas permeability5. Because of these limitations, and with the goal of solving technical challenges using customized devices built &#8220;in-house&#8221;, we describe an alternative method that utilizes xurography7,8,9 protocols and thermal lamination. This method can be adopted with little capital and time investment.
PETLs are fabricated using polyethylene terephthalate (PET) film, coated with the thermoadhesive ethylene-vinyl acetate (EVA). Both materials are widely used in consumer products, are biocompatible and are readily available at minimal cost10. PET/EVA film can be obtained in the form of laminating pouches or rolls. Using a computer-controlled craft cutter commonly found in hobbyist or craft stores, channels are cut out of a single film sheet to define the device&#8217;s architecture11. The channels are then sealed by applying additional film (or glass) layers that are bonded using an (office) thermal laminator (Figure 1A). Perforated, self-adhesive vinyl bumpers are added to facilitate access to the channels. Fabrication times range from 5 to 15 min, which allows rapid design iteration. All the equipment and materials used to make PETLs are commercially accessible and affordable (&#60;350 USD starting cost, compared to thousands of USDs for lithography). Therefore, PETLs provide a novel solution to two main problems posed by conventional microfluidics: affordability and time effectiveness (See PDMS/PETL comparison in Supplementary Tables 1, 2).
In addition to providing researchers with the opportunity to design and fabricate their own devices, PETLs can be easily adopted in the classroom because they are simple and intuitive to use. PETLs can be included in high school and college curricula8, where they are used to help students better understand physical, chemical and biological concepts, like diffusion, laminar flow, micromixing, nanoparticle synthesis, gradient formation and chemotaxis.
In this work we illustrate the overall workflow for the fabrication of model PETLs chips with different levels of complexity. The first device is used to facilitate imaging of cells and micro-organs in a small chamber. The second, more complex device consists of several layers and materials, and is used for research in mechanobiology9. Lastly, we built a device that displays several fluid dynamics concepts (hydrodynamic focusing, laminar flow, diffusive transport and micromixing) for educational purposes. The workflow and device designs presented here can be easily tailored for a large range of purposes in both the research and classroom settings.

<table>
	<tbody>
		<tr>
			<td>Biopsy punch (1mm)</td>
			<td>Miltex</td>
			<td>33-31AA</td>
			<td>Optional, replaces rotary tool set up</td>
		</tr>
		<tr>
			<td>Blunt needles</td>
			<td>Janel, Inc.</td>
			<td>JEN JG18-0.5X-90</td>
			<td>Remove plastic and attach to Tygon tubing</td>
		</tr>
		<tr>
			<td>Coverslips</td>
			<td>Any</td>
			<td></td>
			<td>24 x 60 mm are preferred</td>
		</tr>
		<tr>
			<td>Cutting Mat and blades</td>
			<td>Silhouette America or Nicapa</td>
			<td>www.silhouetteamerica.com/shop/blades-and-mats</td>
			<td>Re-use/Disposables</td>
		</tr>
		<tr>
			<td>Double-sided tape</td>
			<td>Scotch/3M</td>
			<td>667</td>
			<td>Small amounts, any width or brand</td>
		</tr>
		<tr>
			<td>PEEK tubing</td>
			<td>IDEX/any</td>
			<td>1581L</td>
			<td>Different configurations available. Consider using Tygon tubing intead, if not already using PEEK</td>
		</tr>
		<tr>
			<td>PET/EVA thermal laminate film</td>
			<td>Scotch/3M &#38; Transcendia</td>
			<td>TP3854-200,TP5854-100 &#38; transcendia.com/products/trans-kote-pet</td>
			<td>3 - 6 mil (mil = 1/1000 inch) laminating pouches or rolls.</td>
		</tr>
		<tr>
			<td>PVC film - Cling Wrap</td>
			<td>Glad / Any</td>
			<td></td>
			<td>Food wrapping</td>
		</tr>
		<tr>
			<td>Rotary tool-drill</td>
			<td>Dremel/Any</td>
			<td>200-121 or other</td>
			<td>1/32 and 3/64&#34; drill bits from Dremel recommended</td>
		</tr>
		<tr>
			<td>Rubber Roller</td>
			<td>Speedball</td>
			<td>4126</td>
			<td>To facilitate adhesion, any brand will work</td>
		</tr>
		<tr>
			<td>Scissors &#38; tweezers</td>
			<td>Any</td>
			<td>Fiskars-Inch-Titanium-Softgrip-Scissors |Cole-Parmer&#160;&#8211;# UX-07387-12</td>
			<td>Quality brands are recommended</td>
		</tr>
		<tr>
			<td>Silhouette CAMEO Craft cutter</td>
			<td>Silhouette America</td>
			<td>www.silhouetteamerica.com/shop/cameo/SILHOUETTE-CAMEO-3-4T</td>
			<td>Preferred craft cutter</td>
		</tr>
		<tr>
			<td>Silhouette Studio software</td>
			<td>Silhouette America</td>
			<td>www.silhouetteamerica.com/software</td>
			<td>Controls the craft cutter and provides drawing tools (free download MAC and PC)</td>
		</tr>
		<tr>
			<td>Syringe Pump</td>
			<td>Harvard Apparatus or New Era</td>
			<td>70-4504 or NE-300</td>
			<td>Pumps are ideal, pipettes or burettes can be used.</td>
		</tr>
		<tr>
			<td>Syringes</td>
			<td>Any</td>
			<td></td>
			<td>1-3mL</td>
		</tr>
		<tr>
			<td>Thermal laminator</td>
			<td>Scotch/3M</td>
			<td>TL906</td>
			<td>Standard home/office model</td>
		</tr>
		<tr>
			<td>Tygon tubing (E-3603)</td>
			<td>Cole-Parmer</td>
			<td>EW-06407-70</td>
			<td>Use with blunt needle tips</td>
		</tr>
		<tr>
			<td>Vinyl furniture bumpers</td>
			<td>DerBlue/3M/ Everbilt</td>
			<td>Clear, self-adhesive (6 x 2 mm and 8 x 3 mm)</td>
			<td>Round bumpers are recommended</td>
		</tr>
	</tbody>
</table>

rapid fabrication of custom microfluidic devices for research and educational applications

Microfluidic devices allow for the manipulation of fluids, particles, cells, micro-sized organs or organisms in channels ranging from the nano to submillimeter scales. A rapid increase in the use of this technology in the biological sciences has prompted a need for methods that are accessible to a wide range of research groups. Current fabrication standards, such as PDMS bonding, require expensive and time consuming lithographic and bonding techniques. A viable alternative is the use of equipment and materials that are easily affordable, require minimal expertise and allow for the rapid iteration of designs. In this work we describe a protocol for designing and producing PET-laminates (PETLs), microfluidic devices that are inexpensive, easy to fabricate, and consume significantly less time to generate than other approaches to microfluidics technology. They consist of thermally bonded film sheets, in which channels and other features are defined using a craft cutter. PETLs solve field-specific technical challenges while dramatically reducing obstacles to adoption. This approach facilitates the accessibility of microfluidics devices in both research and educational settings, providing a reliable platform for new methods of inquiry.

In addition to low cost and rapid iteration, PETL technology can be easily customized to solve specific challenges. First, we describe a simple device consisting of a glass coverslip, a chamber layer, a channel layer, and an inlet/outlet layer (Figure 2). This device was designed to facilitate the imaging of cells and micro-organs under constant flow. Culture medium is replenished at low flow rates to encourage nutrient and gas exchange. The round chamber features a glass bottom, which allow...

Watch this Scientific Journal Video about Rapid Fabrication of Custom Microfluidic Devices for Research and Educational Applications at JoVE.com

Rapid Fabrication of Custom Microfluidic Devices for Research and Educational Applications

Here we present a protocol to design and fabricate custom microfluidic devices with minimal financial and time investment. The aim is to facilitate the adoption of microfluidic technologies in biomedical research laboratories and educational settings.

Microfluidic devices allow for the manipulation of fluids, particles, cells, micro-sized organs or organisms in channels ranging from the nano to ...

This method for making microfluidic chips is both inexpensive and simple to implement. Any research lab can produce these microfluidics in-house. And the device designs can be iterated within minutes.The main advantage of this technique is its efficiency. That is to say, any lab can make their own custom microfluidic devices in-house quickly and easily. After hand layering each layer of the device, draw the final designs for the layers on a computer, using any software program that allows drawing lines and shapes.Obtain a screen capture of the drawn design and import each layer into a Craft Cutter Software Program. Create a new document and drop the image file on the displayed mat. To trace the design, select the trace icon and completely select the imported designs.Select the trace preview outline option, and adjust the threshold and scale settings as necessary, until the yellow trace matches the design. Select trace from the trace menu. The channels will be shown as a red contour.To size the device, select the traced design, and use the grid provided by the software to change the width and length of the channels and chambers. Small lines can be drawn temporarily to measure the dimensions within the device. After the device has been properly sized, use the drawing tool to draw a square of the same shape and size over each layer of the device.Next, draw a circles over the inlet and outlet ports of the design. Then copy and paste, both the original and the circles. And erase the channels from the underlying device.Arranging all of the layers to be cut on the displayed mat. To cut the layers, wearing gloves, place a single PET-EVA film of a preferred thickness onto the adhesive cutting mat. With the opaque adhesive side facing up, and the plastic shiny side facing down.Flatten the film against the mat, removing all of the air that may have been trapped. And click load mat on the cutter. Open the send tab, and select a cutting setting.Then click send. To align the material for cutting, place the cutting mat next to a clean surface, and use a pair of tweezers or spatula to transfer each layer of the microfluidic device from the cut mat onto the clean surface in order, according to their top-to-bottom position in the device. Next, cut three by 10 millimeter pieces of a double-sided tape, and superimpose the layers one-by-one, starting with the bottom layer.Then adding a small piece of tape to each corner between the layers. When all of the layers have been placed, inspect the device. There should be at least one mat EVA side between each of the layers.And no EVA should be exposed. To laminate the device, after turning on the laminator, set the instrument to the desired thickness setting. And run the device through laminating rollers.Then recover the laminated device. To create the inlet and outlet ports, use a rotary tool and a 1/37 inch drill to cut a small hole through the center of a furniture bumper. Then, use small tweezers to clear the orifice of any debris.And carefully align the bumpers with the inlet outlet ports on the device. To test the fully assembled device, use laboratory tubing to attach the device to a plastic connector. And flush the device with an appropriate solution.Using this device, cell culture medium can be exchanged during imaging, allowing the maintenance of ideal growth conditions, and the controlled introduction of chemical stimuli in real-time. This is also true for the imaging of the ex vibo micro organs. The pedal device has also been successfully used to complete compression testing of Drosophila micro organs.Because of their ease of fabrication, pedal devices can also be used in educational settings. For example, to visual hydrodynamic focusing and diffusion. Pedals can be used for classroom demonstrations or for experiments that require the precise environmental control of the sample.Such as testing a drug, or introducing a treatment while limiting. Using as pedal device to probe the mechanical properties of a developing wing imaginal disc in fruit flies, we found that the tissue stiffness decreases over the developmental periods studied.

rapid-fabrication-custom-microfluidic-devices-for-research

Research

JoVE Journal

Bioengineering

Simple Microfluidic Devices for in vivo Imaging of C. elegans, Drosophila and Zebrafish

Micro fabricated fluidic devices provide an accessible micro-environment for in vivo studies on small organisms. Simple fabrication processes are available for microfluidic devices using soft lithography techniques 1-3. Microfluidic devices have been used for sub-cellular imaging 4,5, in vivo laser microsurgery 2,6 and cellular imaging 4,7. In vivo imaging requires immobilization of organisms. This has been achieved using suction 5,8, tapered channels 6,7,9, deformable membranes 2-4,10, suction with additional cooling 5, anesthetic gas 11, temperature sensitive gels 12, cyanoacrylate glue 13 and anesthetics such as levamisole 14,15. Commonly used anesthetics influence synaptic transmission 16,17 and are known to have detrimental effects on sub-cellular neuronal transport 4. In this study we demonstrate a membrane based poly-dimethyl-siloxane (PDMS) device that allows anesthetic free immobilization of intact genetic model organisms such as Caenorhabditis elegans (C. elegans), Drosophila larvae and zebrafish larvae. These model organisms are suitable for in vivo studies in microfluidic devices because of their small diameters and optically transparent or translucent bodies. Body diameters range from ~10 &mu;m to ~800 &mu;m for early larval stages of C. elegans and zebrafish larvae and require microfluidic devices of different sizes to achieve complete immobilization for high resolution time-lapse imaging. These organisms are immobilized using pressure applied by compressed nitrogen gas through a liquid column and imaged using an inverted microscope. Animals released from the trap return to normal locomotion within 10 min.
We demonstrate four applications of time-lapse imaging in C. elegans namely, imaging mitochondrial transport in neurons, pre-synaptic vesicle transport in a transport-defective mutant, glutamate receptor transport and Q neuroblast cell division. Data obtained from such movies show that microfluidic immobilization is a useful and accurate means of acquiring in vivo data of cellular and sub-cellular events when compared to anesthetized animals (Figure 1J and 3C-F 4).
Device dimensions were altered to allow time-lapse imaging of different stages of C. elegans, first instar Drosophila larvae and zebrafish larvae. Transport of vesicles marked with synaptotagmin tagged with GFP (syt.eGFP) in sensory neurons shows directed motion of synaptic vesicle markers expressed in cholinergic sensory neurons in intact first instar Drosophila larvae. A similar device has been used to carry out time-lapse imaging of heartbeat in ~30 hr post fertilization (hpf) zebrafish larvae. These data show that the simple devices we have developed can be applied to a variety of model systems to study several cell biological and developmental phenomena in vivo.

Simple Microfluidic Devices for in vivo Imaging of C. elegans, Drosophila and Zebrafish

A simple microfluidic device has been developed to perform anesthetic free in vivo imaging of C. elegans, intact Drosophila larvae and zebrafish larvae. The device utilizes a deformable PDMS membrane to immobilize these model organisms in order to perform time lapse imaging of numerous processes such as heart beat, cell division and sub-cellular neuronal transport. We demonstrate the use of this device and show examples of different types of data collected from different model systems.

Micro fabricated fluidic devices provide an accessible micro-environment for in vivo studies on small organisms. Simple fabrication processes are ...

Microfluidic Chip Fabrication and Method to Detect Influenza

Fast and effective diagnostics play an important role in controlling infectious disease by enabling effective patient management and treatment. Here, we present an integrated microfluidic thermoplastic chip with the ability to amplify influenza A virus in patient nasopharyngeal (NP) swabs and aspirates. Upon loading the patient sample, the microfluidic device sequentially carries out on-chip cell lysis, RNA purification and concentration steps within the solid phase extraction (SPE), reverse transcription (RT) and polymerase chain reaction (PCR) in RT-PCR chambers, respectively. End-point detection is performed using an off-chip Bioanalyzer (Agilent Technologies, Santa Clara, CA). For peripherals, we used a single syringe pump to drive reagent and samples, while two thin film heaters were used as the heat sources for the RT and PCR chambers. The chip is designed to be single layer and suitable for high throughput manufacturing to reduce the fabrication time and cost. The microfluidic chip provides a platform to analyze a wide variety of virus and bacteria, limited only by changes in reagent design needed to detect new pathogens of interest.

An integrated microfluidic thermoplastic chip has been developed for use as a molecular diagnostic. The chip performs nucleic acid extraction, reverse transcriptase, and PCR. Methods for fabricating and running the chip are described.

Fast  and effective diagnostics play an important role in controlling infectious  disease by enabling effective patient management and treatment. Here, we ...

Microfluidic Fabrication of Polymeric and Biohybrid Fibers with Predesigned Size and Shape

A &#8220;sheath&#8221; fluid passing through a microfluidic channel at low Reynolds number can be directed around another &#8220;core&#8221; stream and used to dictate the shape as well as the diameter of a core stream.&#160;Grooves in the top and bottom of a microfluidic channel were designed to direct the sheath fluid and shape the core fluid.&#160;By matching the viscosity and hydrophilicity of the sheath and core fluids, the interfacial effects are minimized and complex fluid shapes can be formed.&#160;Controlling the relative flow rates of the sheath and core fluids determines the cross-sectional area of the core fluid.&#160;Fibers have been produced with sizes ranging from 300 nm to ~1 mm, and fiber cross-sections can be round, flat, square, or complex as in the case with double anchor fibers. Polymerization of the core fluid downstream from the shaping region solidifies the fibers.&#160;Photoinitiated click chemistries are well suited for rapid polymerization of the core fluid by irradiation with ultraviolet light.&#160;Fibers with a wide variety of shapes have been produced from a list of polymers including liquid crystals, poly(methylmethacrylate), thiol-ene and thiol-yne resins, polyethylene glycol, and hydrogel derivatives. Minimal shear during the shaping process and mild polymerization conditions also makes the fabrication process well suited for encapsulation of cells and other biological components.

Two adjacent fluids passing through a grooved microfluidic channel can be directed to form a sheath around a prepolymer core; thereby&#160;determining both shape and cross-section. Photoinitiated polymerization, such as thiol click chemistry, is well suited for rapidly solidifying the core fluid into a microfiber with predetermined size and shape.

A &#8220;sheath&#8221; fluid passing through a microfluidic channel at low Reynolds number can be directed around another &#8220;core&#8221; stream and ...

Layer-by-layer Collagen Deposition in Microfluidic Devices for Microtissue Stabilization

Although microfluidics provides exquisite control of the cellular microenvironment, culturing cells within microfluidic devices can be challenging. 3D culture of cells in collagen type I gels helps to stabilize cell morphology and function, which is necessary for creating microfluidic tissue models in microdevices. Translating traditional 3D culture techniques for tissue culture plates to microfluidic devices is often difficult because of the limited channel dimensions. In this method, we describe a technique for modifying native type I collagen to generate polycationic and polyanionic collagen solutions that can be used with layer-by-layer deposition to create ultrathin collagen assemblies on top of cells cultured in microfluidic devices. These thin collagen layers stabilize cell morphology and function, as shown using primary hepatocytes as an example cell, allowing for the long term culture of microtissues in microfluidic devices.

The creation of functional microtissues within microfluidic devices requires the stabilization of cell phenotypes by adapting traditional cell culture techniques to the limited spatial dimensions in microdevices. Modification of collagen allows the layer-by-layer deposition of ultrathin collagen assemblies that can stabilize primary cells, such as hepatocytes, as microfluidic tissue models.

Although microfluidics provides exquisite control of the cellular microenvironment, culturing cells within microfluidic devices can be challenging. 3D ...

Fabrication of Mechanically Tunable and Bioactive Metal Scaffolds for Biomedical Applications

Biometal systems have been widely used for biomedical applications, in particular, as load-bearing materials. However, major challenges are high stiffness and low bioactivity of metals. In this study, we have developed a new method towards fabricating a new type of bioactive and mechanically reliable porous metal scaffolds-densified porous Ti scaffolds. The method consists of two fabrication processes, 1) the fabrication of porous Ti scaffolds by dynamic freeze casting, and 2) coating and densification of the porous scaffolds. The dynamic freeze casting method to fabricate porous Ti scaffolds allowed the densification of porous scaffolds by minimizing the chemical contamination and structural defects. The densification process is distinctive for three reasons. First, the densification process is simple, because it requires a control of only one parameter (degree of densification). Second, it is effective, as it achieves mechanical enhancement and sustainable release of biomolecules from porous scaffolds. Third, it has broad applications, as it is also applicable to the fabrication of functionally graded porous scaffolds by spatially varied strain during densification.

Bioactive and mechanically reliable metal scaffolds have been fabricated through a method which consists of two processes, dynamic freeze casting for the fabrication of porous Ti, and coating and densification of the Ti scaffolds. The densification process is simple, effective and applicable to the fabrication of functionally graded scaffolds.

Biometal systems have been widely used for biomedical applications, in particular, as load-bearing materials. However, major challenges are high stiffness ...

Rapid Subtractive Patterning of Live Cell Layers with a Microfluidic Probe

The microfluidic probe (MFP) facilitates performing local chemistry on biological substrates by confining nanoliter volumes of liquids. Using one particular implementation of the MFP, the hierarchical hydrodynamic flow confinement (hHFC), multiple liquids are simultaneously brought in contact with a substrate. Local chemical action and liquid shaping using the hHFC, is exploited to create cell patterns by locally lysing and removing cells. By utilizing the scanning ability of the MFP, user-defined patterns of cell monolayers are created. This protocol enables rapid, real-time and spatially controlled cell patterning, which can allow selective cell-cell and cell-matrix interaction studies.

We present a protocol to perform subtractive patterning of live cell monolayers on a surface. This is achieved by local and selective lysis of adherent cells using a microfluidic probe (MFP). The cell lysate retrieved from local regions can be used for downstream analysis, enabling molecular profiling studies.

The microfluidic probe (MFP) facilitates performing local chemistry on biological substrates by confining nanoliter volumes of liquids. Using one ...

Multi-step Variable Height Photolithography for Valved Multilayer Microfluidic Devices

Microfluidic systems have enabled powerful new approaches to high-throughput biochemical and biological analysis. However, there remains a barrier to entry for non-specialists who would benefit greatly from the ability to develop their own microfluidic devices to address research questions. Particularly lacking has been the open dissemination of protocols related to photolithography, a key step in the development of a replica mold for the manufacture of polydimethylsiloxane (PDMS) devices. While the fabrication of single height silicon masters has been explored extensively in literature, fabrication steps for more complicated photolithography features necessary for many interesting device functionalities (such as feature rounding to make valve structures, multi-height single-mold patterning, or high aspect ratio definition) are often not explicitly outlined. 
Here, we provide a complete protocol for making multilayer microfluidic devices with valves and complex multi-height geometries, tunable for any application. These fabrication procedures are presented in the context of a microfluidic hydrogel bead synthesizer and demonstrate the production of droplets containing polyethylene glycol (PEG diacrylate) and a photoinitiator that can be polymerized into solid beads. This protocol and accompanying discussion provide a foundation of design principles and fabrication methods that enables development of a wide variety of microfluidic devices. The details included here should allow non-specialists to design and fabricate novel devices, thereby bringing a host of recently developed technologies to their most exciting applications in biological laboratories.

Multilayer microfluidic devices often involve the fabrication of master molds with complex geometries for functionality. This article presents a complete protocol for multi-step photolithography with valves and variable height features tunable to any application. As a demonstration, we fabricate a microfluidic droplet generator capable of producing hydrogel beads.

Microfluidic systems have enabled powerful new approaches to high-throughput biochemical and biological analysis. However, there remains a barrier to ...

Fabrication of Three-dimensional Paper-based Microfluidic Devices for Immunoassays

Paper wicks fluids autonomously due to capillary action. By patterning paper with hydrophobic barriers, the transport of fluids can be controlled and directed within a layer of paper. Moreover, stacking multiple layers of patterned paper creates sophisticated three-dimensional microfluidic networks that can support the development of analytical and bioanalytical assays. Paper-based microfluidic devices are inexpensive, portable, easy to use, and require no external equipment to operate. As a result, they hold great promise as a platform for point-of-care diagnostics. In order to properly evaluate the utility and analytical performance of paper-based devices, suitable methods must be developed to ensure their manufacture is reproducible and at a scale that is appropriate for laboratory settings. In this manuscript, a method to fabricate a general device architecture that can be used for paper-based immunoassays is described. We use a form of additive manufacturing (multi-layer lamination) to prepare devices that comprise multiple layers of patterned paper and patterned adhesive. In addition to demonstrating the proper use of these three-dimensional paper-based microfluidic devices with an immunoassay for human chorionic gonadotropin (hCG), errors in the manufacturing process that may result in device failures are discussed. We expect this approach to manufacturing paper-based devices will find broad utility in the development of analytical applications designed specifically for limited-resource settings.

We detail a method to fabricate three-dimensional paper-based microfluidic devices for use in the development of immunoassays. Our approach to device assembly is a type of multilayer, additive manufacturing. We demonstrate a sandwich immunoassay to provide representative results for these types of paper-based devices.

Paper wicks fluids autonomously due to capillary action. By patterning paper with hydrophobic barriers, the transport of fluids can be controlled and ...

Polydimethylsiloxane-polycarbonate Microfluidic Devices for Cell Migration Studies Under Perpendicular Chemical and Oxygen Gradients

This paper reports a microfluidic device made of polydimethylsiloxane (PDMS) with an embedded polycarbonate (PC) thin film to study cell migration under combinations of chemical and oxygen gradients. Both chemical and oxygen gradients can greatly affect cell migration in vivo; however, due to technical limitations, very little research has been performed to investigate their effects in vitro. The device developed in this research takes advantage of a series of serpentine-shaped channels to generate the desired chemical gradients and exploits a spatially confined chemical reaction method for oxygen gradient generation. The directions of the chemical and oxygen gradients are perpendicular to each other to enable straightforward migration result interpretation. In order to efficiently generate the oxygen gradients with minimal chemical consumption, the embedded PC thin film is utilized as a gas diffusion barrier. The developed microfluidic device can be actuated by syringe pumps and placed into a conventional cell incubator during cell migration experiments to allow for setup simplification and optimized cell culture conditions. In cell experiments, we used the device to study migrations of adenocarcinomic human alveolar basal epithelial cells, A549, under combinations of chemokine (stromal cell-derived factor, SDF-1&#945;) and oxygen gradients. The experimental results show that the device can stably generate perpendicular chemokine and oxygen gradients and is compatible with cells. The migration study results indicate that oxygen gradients may play an essential role in guiding cell migration, and cellular behavior under combinations of gradients cannot be predicted from those under single gradients. The device provides a powerful and practical tool for researchers to study interactions between chemical and oxygen gradients in cell culture, which can promote better cell migration studies in more in vivo-like microenvironments.

The control of chemical and oxygen gradients is essential for cell cultures. This paper reports a polydimethylsiloxane-polycarbonate (PDMS-PC) microfluidic device capable of reliably generating combinations of chemical and oxygen gradients for cell migration studies, which can be practically utilized in biological labs without sophisticated instrumentation.

This paper reports a microfluidic device made of polydimethylsiloxane (PDMS) with an embedded polycarbonate (PC) thin film to study cell migration under ...

Rapid Mix Preparation of Bioinspired Nanoscale Hydroxyapatite for Biomedical Applications

Hydroxyapatite (HA) has been widely used as a medical ceramic due to its good biocompatibility and osteoconductivity. Recently there has been interest regarding the use of bioinspired nanoscale hydroxyapatite (nHA). However, biological apatite is known to be calcium-deficient and carbonate-substituted with a nanoscale platelet-like morphology. Bioinspired nHA has the potential to stimulate optimal bone tissue regeneration due to its similarity to bone and tooth enamel mineral. Many of the methods currently used to fabricate nHA both in the laboratory and commercially, involve lengthy processes and complex equipment. Therefore, the aim of this study was to develop a rapid and reliable method to prepare high quality bioinspired nHA. The rapid mixing method developed was based upon an acid-base reaction involving calcium hydroxide and phosphoric acid. Briefly, a phosphoric acid solution was poured into a calcium hydroxide solution followed by stirring, washing and drying stages. Part of the batch was sintered at 1,000 &#176;C for 2 h in order to investigate the products&#39; high temperature stability. X-ray diffraction analysis showed the successful formation of HA, which showed thermal decomposition to &#946;-tricalcium phosphate after high temperature processing, which is typical for calcium-deficient HA. Fourier transform infrared spectroscopy showed the presence of carbonate groups in the precipitated product. The nHA particles had a low aspect ratio with approximate dimensions of 50 x 30 nm, close to the dimensions of biological apatite. The material was also calcium deficient with a Ca:P molar ratio of 1.63, which like biological apatite is lower than the stoichiometric HA ratio of 1.67. This new method is therefore a reliable and far more convenient process for the manufacture of bioinspired nHA, overcoming the need for lengthy titrations and complex equipment. The resulting bioinspired HA product is suitable for use in a wide variety of medical and consumer health applications.

This paper describes a novel method for the rapid manufacture of high quality bioinspired nanoscale hydroxyapatite. This biomaterial is of great significance in the manufacture of a wide range of innovative medical devices for clinical applications in orthopedics, craniofacial surgery and dentistry.

Hydroxyapatite (HA) has been widely used as a medical ceramic due to its good biocompatibility and osteoconductivity. Recently there has been interest ...