We are grateful to the many persons who have contributed accumulated knowledge to this project over the years including G.-A. Paffenh&#246;fer and D. Deibel who originally developed these protocols. M. K&#246;ster, and L. Lamboley have also contributed significantly to the development of these procedures.&#160; N.B. L&#243;pez-Figueroa and &#193;.E. Rodr&#237;guez-Santiago generated the estimates of doliolid abundance provided in Table 1. This study was supported in part by the US National Science Foundation awards OCE 082599, 1031263 to MEF, collaborative projects OCE 1459293 and OCE 14595010 to MEF and DMG and, the National Oceanic and Atmospheric Administration award NA16SEC4810007 to DMG. We are grateful to the hardworking and professional crew of the R/V Savannah. Lee Ann DeLeo prepared the figures, Charles Y. Robertson proofread the manuscript and, James (Jimmy) Williams manufactured the plankton wheel

1. Preparing culturing facilities for rearing D. gegenbauri
NOTE: All materials and equipment required are listed in the Table of Materials.
<ol>
	<li>Prepare 1 M Sodium Hydroxide (NaOH), 0.06 M Potassium Permanganate (KMnO4) solution. To prepare this solution, dissolve 400 g of NaOH into 10 L deionized water. Add 100 g of KMnO4 to the NaOH solution and mix well.</li>
	<li>Prepare a 0.1 M Sodium bisulfite (NaHSO3) solution by dissolving 100 g of NaHSO3 into 10 L deionized water and mix well. 
	CAUTION: These reagents are irritants that may cause respiratory problems if inhaled. Place in a well-ventilated area such as a fume hood. Avoid any skin contact. Wear protective gloves, protective clothing, eye protection, and face protection when handling.</li>
	<li>Before establishing and rearing doliolid cultures in the laboratory, clean and sterilize the culture jars.
	<ol>
		<li>Rinse 1.9 L and 3.8 L culture jars at least 3 times with deionized water. Allow the screw caps to dry, as the caps are not included in the following cleaning steps.</li>
		<li>Clean and sterilize 1.9- and 3.8 L glass culture jars by immersing them in the NaOH/KMnO4 solution. Allow the jars to soak overnight.</li>
		<li>Remove the jars from the NaOH/KMnO4 solution and immerse the jars into the sodium bisulfite (NaHSO3) solution. Allow the jars to soak overnight.</li>
		<li>Remove the jars from the NaHSO3 solution and rinse thoroughly with deionized water. Allow the jars to dry.</li>
	</ol>
	</li>
	<li>Place the plankton wheel (Figure 2) in a temperature-controlled space (environmental chamber). Equilibrate the temperature to 20 &#176;C. For a more detailed description of the custom plankton wheel please refer to the Supplementary Figure 1.</li>
</ol>
2. Phytoplankton culture
<ol>
	<li>Obtain algal cultures from the National Center for Marine Algae and Microbiota (NCMA) or other sources to be used as food for D. gegenbauri. Mixtures of two flagellate species including Isochrysis galbana (CCMP 1323), Rhodomonas sp (CCMP 740), and a small diatom, Thalassiosira weissflogii (CCMP 1051) were obtained from the NCMA and have been used in previous laboratory studies to rear doliolids successfully17.</li>
	<li>Prepare L1 and L1-Si growth media22 as recommended by the NCMA.</li>
	<li>Follow the instructions provided by the supplier to initiate the new algal cultures.</li>
	<li>To maintain stock cultures, using rigorous axenic culture techniques, transfer 0.5 mL of old senescing culture to 25 mL of fresh growth media in&#160;sterile 55 mL glass culture tubes every two weeks. 
	NOTE: It is not possible to store living algal cultures without transferring them regularly. If cultures will not be used for long periods, and it is not possible to maintain cultures for the duration of the non-use period, it is recommended re-acquiring these common algal cultures from their original sources (e.g., NCMA).</li>
	<li>Prepare larger volumes of phytoplankton for feeding doliolids in clean 500 mL plastic tissue culture flasks containing 200 mL of growth media.
	<ol>
		<li>Inoculate phytoplankton from axenic stocks (4 mL) into 200 mL of growth media (1:50 dilution).</li>
		<li>Incubate at 20 &#176;C with a 12:12 h light:dark cycle under cool white light illumination of 65-85 &#181;E/m2. Lay culture flasks flat to maximize illumination. Gently swirl culture daily.</li>
		<li>Determine the concentration of cells using a particle counter or microscope to monitor the growth of the cultures. 
		NOTE: After 7-10 days from inoculation, the flagellate cultures will contain ~105-106 cells/mL and the diatom culture will contain ~104-105 cells/mL. These concentrations are enough to maintain the doliolid cultures.</li>
		<li>Initiate new feeding stocks at a minimum of every two weeks to provide enough algal biomass for supporting all culture activities.</li>
	</ol>
	</li>
</ol>
3. Collection of wild doliolids and seawater for culture
NOTE: An overview of collection and cultivation approaches is outlined in Figure 3. A description of the specialized collection plankton net and cod-end is provided in Figure 4.
<ol>
	<li>Locate doliolids by detecting them using either plankton nets or in situ imaging systems23. 
	NOTE: Because doliolids are rarely present in surface waters and are not detectable by remote sensing technology, guided by prerequisite knowledge of conditions favorable to doliolids (see Discussion), the presence of doliolids must be determined prior to sampling.</li>
	<li>Collect particle-rich seawater prior to collecting live doliolids in preparation for initiating a D. gegenbauri culture.
	<ol>
		<li>Deploy Niskin bottles mounted on a CTD rosette or equivalent equipment to collect water from the site where doliolids are located and from the depth containing the highest estimates of chlorophyll a concentration estimated by in situ fluorometry. 
		NOTE: Chlorophyll a concentration is used as an indicator of particle concentrations. On the South Atlantic Bight (SAB) mid-continental shelf, the subsurface chlorophyll a maximum is usually close to the bottom, but in other locations, it may not be.</li>
	</ol>
	</li>
	<li>Once doliolids are located, recover undamaged doliolid zooids using the specialized plankton net and cod-end. Before deploying the net, fill the cod-end with seawater.
	<ol>
		<li>From a drifting ship, lower and raise the net through the water column maintaining an oblique towing angle of ~15 - 25&#176; and vertical deployment and retrieval speed not greater than 15 m/min.</li>
	</ol>
	</li>
	<li>Once the net is onboard, gently transfer and divide the contents of the cod-end into 3, 5-gallon (~20 L) plastic buckets each containing ~ 10 L of surface seawater collected from the site. 
	NOTE: New plastic buckets should be conditioned by the addition of seawater days before living doliolid collection. The aim is to reduce the leaching of chemicals from plastic. If seawater is not available, use purified (e.g., Milli Q) or tap water free of toxic contaminants to condition the buckets.</li>
	<li>Isolate doliolid zooids from other plankton.
	<ol>
		<li>In small batches (~ 2 L) transfer mixed planktons from the net tow contents (now in 20 L plastic buckets) to a 2 L glass beaker.</li>
		<li>Using a wide-bore glass pipette (8 mm ID x 38 cm length), carefully siphon and transfer actively swimming doliolid zooids from the beaker into clean glass culture jars containing particle-rich seawater collected using Niskin bottles from where doliolids were located.</li>
		<li>Gently release the doliolid zooids beneath the surface of the seawater. 
		NOTE: Collect gonozooids, phorozooids containing attached developing gonozooids, and nurse stages containing attached trophozooids (Figure 1).</li>
	</ol>
	</li>
	<li>After the addition of doliolids, add Rhodomonas sp. culture to a final concentration of ~ 5 x 103 &#8211; 104 cells/mL (~50 mL of a culture containing ~ 5 x 104 &#8211; 1 x 105 cells/mL in a 3.8 L jar). This is to determine if the doliolids are actively feeding. When doliolids ingest Rhodomonas sp., their digestive tract will appear red in color. Remove zooids that do not appear to be feeding.</li>
	<li>To prevent doliolids from being trapped at the air-water interface, avoid the headspace in the culture jars by completely filling the jars with unfiltered particle-rich seawater and placing a piece of plastic wrap over the jar opening (89 mm wide).
	<ol>
		<li>Avoid creating air bubbles that can also damage the animals. Carefully screw the cap onto the jar and gently invert the jar to determine if bubbles are present. If bubbles are present, remove them.</li>
		<li>After jars are filled, wipe the excess water from the outside of the jar.</li>
	</ol>
	</li>
	<li>Mount each jar onto the plankton wheel (Figure 2) by placing the jar on the vertical metal bars covered with rubber tubing, and between a stainless-steel hose clamp.
	<ol>
		<li>Ensure that the back of the jar is cushioned against the rubber tubing. Tighten the hose clamp around the jar by adjusting the screw.</li>
		<li>Check that the jar is not moving once it is securely fastened in place. Allow the jars to rotate at 0.3 rpm to keep the doliolids in suspension. 
		CAUTION: It is important not to overtighten the jar to prevent the jar from cracking.</li>
	</ol>
	</li>
	<li>On the ship, maintain the culture vessels on the plankton wheel at 20 &#176;C in dim light until they can be transferred to the laboratory culture facility.</li>
	<li>Upon returning to the laboratory, transfer the jars containing doliolids into the prepared culture facility. Mount jars on the plankton wheel (see step 3.8) and allow the jars to continue to rotate at 0.3 rpm. 
	NOTE: All rearing of doliolids in this study was conducted at 20 &#176;C.</li>
</ol>
4. Maintaining D. gegenbauri cultures
<ol>
	<li>From the ship to the lab, allow the animals to acclimate in the original jars to the laboratory conditions for 3 days.
	<ol>
		<li>During the acclimation period, use a wide bore glass pipette to exchange 10% of the water with unfiltered particle-rich seawater from the collection site every day for 3 days.</li>
		<li>Keep several copepods in the jar but remove all other zooplankton, large fecal pellets, and large aggregated particles that may clog the doliolid&#8217;s filtering apparatus (mucus net). If the culture consists of early nurses, keep one large gonozooid&#160;(&#8805; 6 mm) in the jar. 
		NOTE: It is not important which copepod species are included in the culture, but in this experiment, the most abundant species present from where the doliolids were captured was used.</li>
	</ol>
	</li>
	<li>Following the acclimation period, transfer doliolid zooids and copepods from the original jar to a clean cultivation jar containing 80% glass fiber filter (GF/F) filtered seawater and 20% of the seawater from the original jar. Prepare filtered seawater by filtering seawater through a GF/F with a nominal pore size of 0.7 &#181;m filter paper.</li>
	<li>Maintain the new culture by exchanging 10% of the water with GF/F filtered seawater every 3 days and by removing aggregates and fecal pellets. Weekly, transfer animals to a new jar as described in step 4.2.</li>
	<li>Feed doliolids by maintaining phytoplankton concentrations in the culture jars between 40 - 95 &#181;g C/L. 
	NOTE: These concentrations mimic environmental conditions that are known to support bloom conditions for D. gegenbauri17. The mixture of algal species varies depending on the life stage and the number of zooids in each jar. During early life stages, add 1:1 mixture (by carbon content) of the cryptomonad algae (Isochrysis galbana and Rhodomonas sp.) only. Larger prey species can easily clog the feeding apparatus of small nurses and developing trophozooids. Add the diatom Thalassiosira weissflogii to the algal mixture, also at equal carbon content, when feeding larger nurses, phorozooids, and gonozooids.
	<ol>
		<li>Monitor algal concentrations pre- and post-feeding to guide the decision of how frequently and how much algae to add to the cultures. Use a particle counter to determine algal concentrations, because algal concentrations in the culture jars are relatively dilute.</li>
	</ol>
	</li>
	<li>Remove enough zooids to maintain algal concentrations of 40 &#8211; 95 &#181;gC/L so that the remaining doliolids will have enough food to grow. 
	NOTE: The most difficult life stage to maintain successfully under laboratory conditions is the developing larvae and oozooid (early nurse). During this phase of the culture, keep one large gonozooid (&#8805; 6 mm) in addition to several copepods in the jar with developing larvae and oozooids (~ 20 per 3.8 L jar).</li>
	<li>Transfer at least 4 nurses into to a new culturing jar once a minimum of 8 trophozooids are visible on the nurse&#8217;s cadophore (Figure 1B). 
	NOTE: Trophozooids will double in number every 1 &#8211; 2 days at 20 &#176;C. Trophozooids are large enough to be visible to the naked eye.
	<ol>
		<li>Remove two of the nurses once nurses develop 20 trophozooids.</li>
		<li>Remove one nurse when the nurses develop &#62; 30 trophozooids on their cadophores. Allow the remaining nurse to develop phorozooids on its cadophore.</li>
		<li>Remove the nurse once the nurse releases up to 30 phorozooids.</li>
	</ol>
	</li>
	<li>Reduce the number of animals in the jar once the phorozooids reach 3 mm in size.
	<ol>
		<li>Remove all but four phorozooids when the phorozooids become larger (&#62; 5 mm) and have developed gonozooid clusters.</li>
		<li>Reduce the culture to two phorozooids when the number of gonozooids clusters increase in size and begin to feed.</li>
		<li>Remove the phorozooids once the phorozooids release up to 30 gonozooids.</li>
	</ol>
	</li>
	<li>Reduce the number of gonozooids from 30 zooids to 2 per jar. Allow fertilized eggs to be released into the jar.
	<ol>
		<li>Remove one gonozooid leaving a single gonozooid in the jar once the oozooids develop. 
		NOTE: Discarded nurses, phorozooids, and gonozooids can be used to seed additional cultures and to conduct further experiments.</li>
	</ol>
	</li>
</ol>

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M., Paffenh&#246;fer, G. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Feeding+and+growth+rates+of+the+doliolid,+Dolioletta+gegenbauri+Uljanin+(Tunicata,+Thaliacea).">Feeding and growth rates of the doliolid, Dolioletta gegenbauri Uljanin (Tunicata, Thaliacea).</a> Journal of Plankton Research. 22 (8), 1485-1500 (2000).</li><li>Haskell, A., Hofmann, E., Paffenh&#246;fer, G., Verity, P. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Modeling+the+effects+of+doliolids+on+the+plankton+community+structure+of+the+southeastern+US+continental+shelf.">Modeling the effects of doliolids on the plankton community structure of the southeastern US continental shelf.</a> Journal of Plankton Research. 21 (9), 1725-1752 (1999).</li><li>Gibson, D. M., Paffenh&#246;ffer, G. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Asexual+reproduction+of+the+doliolid,+Dolioletta+gegenbauri+Uljanin+(Tunicata,+Thaliacea).">Asexual reproduction of the doliolid, Dolioletta gegenbauri Uljanin (Tunicata, Thaliacea).</a> Journal of Plankton Research. 24 (7), 703-712 (2002).</li><li>Frischer, M. E., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Reliability+of+qPCR+for+quantitative+gut+content+estimation+in+the+circumglobally+abundant+pelagic+tunicate+Dolioletta+gegenbauri+(Tunicata,+Thaliacea).">Reliability of qPCR for quantitative gut content estimation in the circumglobally abundant pelagic tunicate Dolioletta gegenbauri (Tunicata, Thaliacea).</a> Food Webs. 1, 7 (2014).</li><li>K&#246;ster, M., Paffenh&#246;fer, G., Baker, C., Williams, J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Oxygen+consumption+of+doliolids+(Tunicata,+Thaliacea).">Oxygen consumption of doliolids (Tunicata, Thaliacea).</a> Journal of Plankton Research. 32 (2), 171-180 (2010).</li><li>Paffenh&#246;fer, G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+hypothesis+on+the+fate+of+blooms+of+doliolids+(Tunicata,+Thaliacea).">A hypothesis on the fate of blooms of doliolids (Tunicata, Thaliacea).</a> Journal of Plankton Research. 35 (4), 919-924 (2013).</li><li>Takahashi, K., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Sapphirinid+copepods+as+predators+of+doliolids:+Their+role+in+doliolid+mortality+and+sinking+flux.">Sapphirinid copepods as predators of doliolids: Their role in doliolid mortality and sinking flux.</a> Limnology and Oceanography. 58 (6), 1972-1984 (2013).</li><li>Mart&#237;-Solans, J., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Oikopleura+dioica+Culturing+Made+Easy:+A+Low-Cost+Facility+for+an+Emerging+Animal+Model+in+EvoDevo.">Oikopleura dioica Culturing Made Easy: A Low-Cost Facility for an Emerging Animal Model in EvoDevo.</a> Genesis. 53 (1), 183-193 (2015).</li><li>Nishida, H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Development+of+the+appendicularian+Oikopleura+dioica:+Culture,+genome,+and+cell+lineages.">Development of the appendicularian Oikopleura dioica: Culture, genome, and cell lineages.</a> Development Growth &amp; Differentiation. 50, S239-S256 (2008).</li></ol>

The authors have nothing to declare.

The capacity to culture doliolids has been established over the past several decades and has been used to support research in several areas. Experimental studies in our laboratories have supported the publication of at least 15 scientific studies focused on the feeding and growth18,26, reproduction18,28, diet6,29, physiology30</s...

Zooplankton account for the largest animal biomass in the ocean, are key components in marine food webs, and play important roles in ocean biogeochemical cycles1,2. Zooplankton, although comprised of a huge diversity of organisms, can be grossly distinguished into two categories: gelatinous and non-gelatinous with few intermediate taxa3,4. Compared to the non-gelatinous zooplankton, gelatinous zooplankton are especially difficult to study because of their complex life histories5, and their delicate tissues are easily damaged during capture and handling. Gelatinous zooplankton species are, therefore, notoriously difficult to culture in the laboratory and generally less studied compared to non-gelatinous species6.
Among gelatinous zooplankton groups, one abundant and of ecological importance in the world&#8217;s ocean are the Thaliaceans. Thaliaceans are a class of pelagic tunicates that include the orders Salpida, Pyrosomida, and Doliolida7. Doliolida, collectively referred to as doliolids, are small barrel-shaped free-swimming pelagic organisms that can reach high abundances in productive neritic regions of subtropical oceans. Doliolids are among the most abundant of all the zooplankton groups4,8. As suspension feeders, doliolids collect food particles from the water column by creating filter currents and capturing them on mucus nets9. Taxonomically, doliolids are classified in the phylum Urochordata10. Ancestral to the chordates, and in addition to their ecological significance as key components of marine pelagic systems, Thaliaceans are of significance to understanding the origins of colonial life history10,11 and the evolution of the chordates5,7,10,12,13,14.
The life history of doliolids is complex and contributes to the difficulty in culturing and sustaining them through their life cycle. A review of the doliolid life cycle and anatomy can be found in Godeaux et al.15. The doliolid life cycle, which involves an obligatory alternation between sexual and asexual life-history stages, is presented in Figure 1. Eggs and sperm are produced by the hermaphroditic gonozooids, the only solitary stage of the life cycle. Gonozooids release sperm to the water column and eggs are internally fertilized and released to develop into larvae. Larvae hatch and metamorphose into oozooids that can reach 1-2 mm. Presuming conducive environmental conditions and nutrition, oozooids become early nurses within 1-2 days at 20 &#176;C and initiate the colonial stages of the life cycle. Oozooids asexually produce buds on their ventral stolon. These buds leave the stolon and migrate to the dorsal cadophore where they line up in three paired rows. The central double rows become phorozooids and the outer two double rows become trophozooids. The latter provide food to both the nurse and the phorozooids16,17. The trophozooids supply the nurse with nutrition as she loses all internal organs. As the abundance of trophozooids increases, the size of the nurse can reach 15 mm in the laboratory. As the phorozooids grow, they increasingly ingest planktonic prey and reach ~ 1.5 mm in size prior to being released as individuals17. A single nurse may release &#62; 100 phorozooids during its lifespan18. After the phorozooids are released from the cadophore, they continue to grow and are the second colonial stage of the life cycle. Once they reach ~ 5 mm in size, each phorozooid develops a cluster of gonozooids on their ventral peduncle. These gonozooids can ingest particles when they reach ~1 mm in length. After the gonozooids have reached ~ 2 to 3 mm in size they are released from the phorozooid and become the only solitary stage of the life cycle. Once they reach ~ 6 mm in size, gonozooids become sexually mature17. Gonozooids can reach 9 mm or greater in length. Gonozooids are hermaphroditic, sperm is released intermittently while the fertilization of the eggs occurs internally16,17. When the gonozooid is &#8805; 6 mm in size, it releases up to 6 fertilized eggs. Successful culturing requires supporting the specific needs of each of these unique life history stages.
Due to the ecological and evolutionary significance of Thaliaceans, including doliolids, there is a need for the cultivation methodologies to advance the understanding of this organism&#8217;s unique biology, physiology, ecology, and evolutionary history19. Doliolids have considerable promise as experimental model organisms in developmental biology and functional genomics because they are transparent and likely have streamlined genomes20,21. The lack of reliable cultivation methods, however, impedes their usefulness as laboratory models. Although a handful of laboratories have published results based on cultured doliolids, to our knowledge cultivation approaches and detailed protocols have not been previously published. Based on years of experience, and trial and error cultivation attempts, the purpose of this study was to review experiences and to share protocols for the collection and cultivation of doliolids, specifically the species Dolioletta gegenbauri.

<table><tbody><tr><td>Algal culture tubes (55 mL sterile disposable glass culture tubes)</td><td>Any</td><td>NA</td><td>For algal cultures</td></tr><tr><td>Autoclave</td><td>Any</td><td>NA</td><td>For sterilizing equipment and seawater for algal cultures</td></tr><tr><td>Beakers (2 L glass)</td><td>Any</td><td>NA</td><td>For sorting diluted plankton net tow contents</td></tr><tr><td>Buckets (5 gallon, ~20L)</td><td>Any</td><td>NA</td><td>For diluting contents of planton net tow - should be seawater conditioned before first use</td></tr><tr><td>Carboys (20 L)&amp;nbsp;</td><td>Any</td><td>NA</td><td>For storing seawater</td></tr><tr><td>Doliolid glass culturing jar (1.9 L narrow mouth glass jar with cap)</td><td>Qorpak</td><td>GLC-01882</td><td>Container for culture</td></tr><tr><td>Doliolid glass culturing jar (3.8 L narrow mouth glass jar with cap)</td><td>Qorpak</td><td>GLC-01858</td><td>Container for culture</td></tr><tr><td>Environmental Chamber (Temperature controlled enviromental chamber)</td><td>Any</td><td>NA</td><td>To accommodate plankton wheel and culture maintenance</td></tr><tr><td>Filtration apparatus for 47 mm filters</td><td>Any</td><td>NA</td><td>For filtering seawater for cultures</td></tr><tr><td>Glass microfiber filters, 47 mm</td><td>Whatman</td><td>1825-047</td><td>For filtering seawater for cultures</td></tr><tr><td>Glass pipette (borosillicate glass pipette (glass tubing), OD 10mm, ID 8 mm, wall thickness 1mm)</td><td>Science Company</td><td>NC-10894</td><td>Custom cut and edges polished</td></tr><tr><td>Hose clamps, stainless steel, #104 (178 mm)</td><td>Any</td><td>NA</td><td>For holding culturing jars to the plankton wheel</td></tr><tr><td>&lt;em&gt;Isochrysis galbana&lt;/em&gt; strain CCMP1323</td><td>National Center for Marine Algae and Microbiota (NCMA)</td><td>strain CCMP1323</td><td>For feeding doliolid cultures</td></tr><tr><td>L1 Media Kit, 50 L</td><td>National Center for Marine Algae and Microbiota (NCMA)</td><td>MKL150L</td><td>For culturing algae</td></tr><tr><td>Lamp (Fluorescent table lamp with an adjustable arm)</td><td>Any</td><td>NA</td><td>For illuminating doliolids in the jars and beakers</td></tr><tr><td>Lighted temperature controlled incubator</td><td>Any</td><td>NA</td><td>For algal cultures</td></tr><tr><td>Micropipettes and sterile tips (0-20 &amp;micro;l, 20-200 &amp;micro;l, 200-1000&amp;nbsp;&amp;micro;l)</td><td>Any</td><td>NA</td><td>For algal cultures</td></tr><tr><td>Plankton Net (202 &amp;micro;m 0.5 m, 5:1 length) with cod end ring and &amp;nbsp;4 L aquarium cod-end</td><td>Sea-Gear Corporation</td><td>90-50x5-200-4A/BB</td><td>For collecting living doliolids (see Figure 4)</td></tr><tr><td>Plankton Wheel</td><td>NA</td><td>NA</td><td>Custom built (see Figure 2)</td></tr><tr><td>Plastic wrap</td><td>Any</td><td>NA</td><td>To cover inside of lid of doliolid culture jars</td></tr><tr><td>Potassium Permanganate</td><td>Fisher Scientific</td><td>P279-500</td><td>Reagent for cleaning jars and glassware</td></tr><tr><td>Rhodomonas&amp;nbsp;sp. strain CCMP740</td><td>National Center for Marine Algae and Microbiota (NCMA)</td><td>strain CCMP740</td><td>For feeding doliolid cultures</td></tr><tr><td>Rubber Tubing</td><td>NA</td><td>NA</td><td>For holding culturing jars to the plankton wheel (can be made from tygon tubing)</td></tr><tr><td>Sodium Bisulfite</td><td>Fisher Scientific</td><td>S654-500</td><td>Reagent for cleaning jars and glassware</td></tr><tr><td>Sodium Hydroxide</td><td>Fisher Scientific</td><td>BP359-212</td><td>Reagent for cleaning jars and glassware</td></tr><tr><td>Sterile serological pipettes (1 mL, 5 mL, 10 mL, 25 mL)</td><td>Any</td><td>NA</td><td>For algal cultures</td></tr><tr><td>&lt;em&gt;Thalassiosira weissflogii&lt;/em&gt; strain CCMP1051</td><td>National Center for Marine Algae and Microbiota (NCMA)</td><td>strain CCMP1051</td><td>For feeding doliolid cultures</td></tr><tr><td>Tissue culture flasks (250 mL)</td><td>Any</td><td>NA</td><td>For algal cultures</td></tr></tbody></table>

cultivation of the marine pelagic tunicate dolioletta gegenbauri (uljanin 1884) for experimental studies

Gelatinous zooplanktons play a crucial role in ocean ecosystems. However, it is generally difficult to investigate their physiology, growth, fecundity, and trophic interactions primarily due to methodological challenges, including the ability to culture them. This is particularly true for the doliolid, Dolioletta gegenbauri. D. gegenbauri commonly occurs in productive subtropical continental shelf systems worldwide, often at bloom concentrations capable of consuming a large fraction of daily primary production. In this study, we describe cultivation approaches for collecting, rearing, and maintaining D. gegenbauri for the purpose of conducting laboratory-based studies. D. gegenbauri and other doliolid species can be captured live using obliquely towed conical 202 &micro;m mesh plankton nets from a drifting ship. Cultures are most reliably established when water temperatures are below 21 &deg;C and are started from immature gonozooids, maturing phorozooids, and large nurses. Cultures can be maintained in rounded culture vessels on a slowly rotating plankton wheel and sustained on a diet of cultured algae in natural seawater for many generations. In addition to the ability to establish laboratory cultures of D. gegenbauri, we demonstrate that the collection condition, algae concentration, temperature, and exposure to naturally conditioned seawater are all critical to the culture establishment, growth, survival, and reproduction of D. gegenbauri.

Following the described procedures for collecting and culturing the doliolid, D. gegenbauri outlined in Figure 3, it is possible to maintain a culture of D. gegenbauri throughout its complex life history (Figure 1) and sustain it for many generations. Although cultivation of D. gegenbauri is described here, these procedures should also be relevant for the cultivation of other doliolid species.
Capturing heal...

Watch this Scientific Journal Video about Cultivation of the Marine Pelagic Tunicate Dolioletta gegenbauri Uljanin 1884 for Experimental Studies at JoVE.com

Cultivation of the Marine Pelagic Tunicate Dolioletta gegenbauri Uljanin 1884 for Experimental Studies

Doliolids, including the species Dolioletta gegenbauri, are small gelatinous marine zooplankton of ecological significance found on productive subcontinental shelf systems worldwide. The difficulty of culturing these delicate organisms limits their investigation. In this study, we describe cultivation approaches for collecting, rearing, and maintaining the doliolid Dolioletta gegenbauri.

Cultivation of the Marine Pelagic Tunicate Dolioletta gegenbauri (Uljanin 1884) for Experimental Studies

Gelatinous zooplanktons play a crucial role in ocean ecosystems. However, it is generally difficult to investigate their physiology, growth, fecundity, ...

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9.5K Views.  University of Georgia. Beschikbaarheid van culturable model organismen is fundamenteel geweest voor de vooruitgang op vele gebieden van studie. Dit protocol, voor zover wij weten, is de enige aanpak beschikbaar voor het kweken van Dolioliden. Betrouwbare Doliolid cultuurtechnologie biedt een uniek experimenteel model om organismen te bestuderen die belangrijk zijn voor enkele van de meest productieve regio's van de oceaan en die de vroegste evolutionaire voorouders van gewervelde dieren vertegenwoordigen.Dez...

Video: Cultivation of the Marine Pelagic Tunicate Dolioletta gegenbauri Uljanin 1884 for Experimental Studies

A Noninvasive Method For In situ Determination of Mating Success in Female American Lobsters (Homarus americanus)

Despite being one of the most productive fisheries in the Northwest Atlantic, much remains unknown about the natural reproductive dynamics of American lobsters. Recent work in exploited crustacean populations (crabs and lobsters) suggests that there are circumstances where mature females are unable to achieve their full reproductive potential due to sperm limitation. To examine this possibility in different regions of the American lobster fishery, a reliable and noninvasive method was developed for sampling large numbers of female lobsters at sea. This method involves inserting a blunt-tipped needle into the female&#39;s seminal receptacle to determine the presence or absence of a sperm plug and to withdraw a sample that can be examined for the presence of sperm. A series of control studies were conducted at the dock and in the laboratory to test the reliability of this technique. These efforts entailed sampling 294 female lobsters to confirm that the presence of a sperm plug was a reliable indicator of sperm within the receptacle and thus, mating. This paper details the methodology and the results obtained from a subset of the total females sampled. Of the 230 female lobsters sampled from George&#39;s Bank and Cape Ann, MA (size range = 71-145 mm in carapace length), 90.3% were positive for sperm. Potential explanations for the absence of sperm in some females include: immaturity (lack of physiological maturity), breakdown of the sperm plug after being used to fertilize a clutch of eggs, and lack of mating activity. The surveys indicate that this technique for examining the mating success of female lobsters is a reliable proxy that can be used in the field to document reproductive activity in natural populations.

A Noninvasive Method For In situ Determination of Mating Success in Female American Lobsters Homarus americanus

Fishery-induced changes to exploited crustacean fisheries, such as the American lobster fishery, could potentially influence their reproductive dynamics, leading to a reduction in mating success. This study&#39;s goal was to develop a noninvasive method for ascertaining the mating success of female lobsters that may be physiologically or functionally mature.

Despite being one of the most productive fisheries in the Northwest Atlantic, much remains unknown about the natural reproductive dynamics of American ...

A Fish-feeding Laboratory Bioassay to Assess the Antipredatory Activity of Secondary Metabolites from the Tissues of Marine Organisms

Marine chemical ecology is a young discipline, having emerged from the collaboration of natural products chemists and marine ecologists in the 1980s with the goal of examining the ecological functions of secondary metabolites from the tissues of marine organisms. The result has been a progression of protocols that have increasingly refined the ecological relevance of the experimental approach. Here we present the most up-to-date version of a fish-feeding laboratory bioassay that enables investigators to assess the antipredatory activity of secondary metabolites from the tissues of marine organisms. Organic metabolites of all polarities are exhaustively extracted from the tissue of the target organism and reconstituted at natural concentrations in a nutritionally appropriate food matrix. Experimental food pellets are presented to a generalist predator in laboratory feeding assays to assess the antipredatory activity of the extract. The procedure described herein uses the bluehead, Thalassoma bifasciatum, to test the palatability of Caribbean marine invertebrates; however, the design may be readily adapted to other systems. Results obtained using this laboratory assay are an important prelude to field experiments that rely on the feeding responses of a full complement of potential predators. Additionally, this bioassay can be used to direct the isolation of feeding-deterrent metabolites through bioassay-guided fractionation. This feeding bioassay has advanced our understanding of the factors that control the distribution and abundance of marine invertebrates on Caribbean coral reefs and may inform investigations in diverse fields of inquiry, including pharmacology, biotechnology, and evolutionary ecology.

This bioassay employs a model predatory fish to assess the presence of feeding-deterrent metabolites from organic extracts of the tissues of marine organisms at natural concentrations using a nutritionally comparable food matrix.

Marine chemical ecology is a young discipline, having emerged from the collaboration of natural products chemists and marine ecologists in the 1980s with ...

Clean Sampling and Analysis of River and Estuarine Waters for Trace Metal Studies

Most of the trace metal concentrations in ambient waters obtained a few decades ago have been considered unreliable owing to the lack of contamination control. Developments of some techniques aiming to reduce trace metal contamination in the last couple of decades have resulted in concentrations reported now being orders of magnitude lower than those in the past. These low concentrations often necessitate preconcentration of water samples prior to instrumental analysis of samples. Since contamination can appear in all phases of trace metal analyses, including sample collection (and during preparation of sampling containers), storage and handling, pretreatments, and instrumental analysis, specific care needs to be taken in order to reduce contamination levels at all steps. The effort to develop and utilize "clean techniques" in trace metal studies allows scientists to investigate trace metal distributions and chemical and biological behavior in greater details. This advancement also provides the required accuracy and precision of trace metal data allowing for environmental conditions to be related to trace metal concentrations in aquatic environments.
This protocol that is presented here details needed materials for sample preparation, sample collection, sample pretreatment including preconcentration, and instrumental analysis. By reducing contamination throughout all phases mentioned above for trace metal analysis, much lower detection limits and thus accuracy can be achieved. The effectiveness of "clean techniques" is further demonstrated using low field blanks and good recoveries for standard reference material. The data quality that can be obtained thus enables the assessment of trace metal distributions and their relationships to environmental parameters.

Special care using "clean techniques" is required to properly collect and process water samples for trace metal studies in aquatic environments. A protocol for sampling, processing, and analytical procedures with the aim of obtaining reliable environmental monitoring data and results with high sensitivity for detailed trace metal studies is presented.

Most of the trace metal concentrations in ambient waters obtained a few decades ago have been considered unreliable owing to the lack of contamination ...

Experimental Protocol for Biodiesel Production with Isolation of Alkenones as Coproducts from Commercial Isochrysis Algal Biomass

The need to replace petroleum fuels with alternatives from renewable and more environmentally sustainable sources is of growing importance. Biomass-derived biofuels have gained considerable attention in this regard, however first generation biofuels from edible crops like corn ethanol or soybean biodiesel have generally fallen out of favor. There is thus great interest in the development of methods for the production of liquid fuels from domestic and superior non-edible sources. Here we describe a detailed procedure for the production of a purified biodiesel from the marine microalgae Isochrysis. Additionally, a unique suite of lipids known as polyunsaturated long-chain alkenones are isolated in parallel as potentially valuable coproducts to offset the cost of biodiesel production. Multi-kilogram quantities of Isochrysis are purchased from two commercial sources, one as a wet paste (80% water) that is first dried prior to processing, and the other a dry milled powder (95% dry). Lipids are extracted with hexanes in a Soxhlet apparatus to produce an algal oil (&#34;hexane algal oil&#34;) containing both traditional fats (i.e., triglycerides, 46-60% w/w) and alkenones (16-25% w/w). Saponification of the triglycerides in the algal oil allows for separation of the resulting free fatty acids (FFAs) from alkenone-containing neutral lipids. FFAs are then converted to biodiesel (i.e., fatty acid methyl esters, FAMEs) by acid-catalyzed esterification while alkenones are isolated and purified from the neutral lipids by crystallization. We demonstrate that biodiesel from both commercial Isochrysis biomasses have similar but not identical FAME profiles, characterized by elevated polyunsaturated fatty acid contents (approximately 40% w/w). Yields of biodiesel were consistently higher when starting from the Isochrysis wet paste (12% w/w vs. 7% w/w), which can be traced to lower amounts of hexane algal oil obtained from the powdered Isochrysis product.

Experimental Protocol for Biodiesel Production with Isolation of Alkenones as Coproducts from Commercial Isochrysis Algal Biomass

Detailed methods are presented for the production of biodiesel along with the co-isolation of alkenones as valuable coproducts from commercial Isochrysis microalgae.

The need to replace petroleum fuels with alternatives from renewable and more environmentally sustainable sources is of growing importance. ...

The Barnacle Balanus improvisus as a Marine Model - Culturing and Gene Expression

Barnacles are marine crustaceans with a sessile adult and free-swimming, planktonic larvae. The barnacle Balanus (Amphibalanus) improvisus is particularly relevant as a model for the studies of osmoregulatory mechanisms because of its extreme tolerance to low salinity. It is also widely used as a model of settling biology, in particular in relation to antifouling research. However, natural seasonal spawning yields an unpredictable supply of cyprid larvae for studies. A protocol for the all-year-round culturing of B. improvisus has been developed and a detailed description of all steps in the production line is outlined (i.e., the establishment of adult cultures on panels, the collection and rearing of barnacle larvae, and the administration of feed for adults and larvae). The description also provides guidance on troubleshooting and discusses critical parameters (e.g., the removal of contamination, the production of high-quality feed, the manpower needed, and the importance of high-quality seawater). Each batch from the culturing system maximally yields roughly 12,000 nauplii and can deliver four batches in a week, so up to almost 50,000 larvae per week can be produced. The method used to culture B. improvisus is, probably, to a large extent also applicable to other marine invertebrates with free-swimminglarvae. Protocols are presented for the dissection of various tissues from adults as well as the production of high-quality RNA for studies on gene expression. It is also described how cultured adults and reared cyprids can be utilized in a wide array of experimental designs for examining gene expression in relation to external factors. The use of cultured barnacles in gene expression is illustrated with studies of possible osmoregulatory roles of Na+/K+ ATPase and aquaporins.

The Barnacle Balanus improvisus as a Marine Model - Culturing and Gene Expression

The barnacle Balanus (Amphibalanus) improvisus is a model for studying osmoregulation and antifouling. However, natural seasonal spawning yields an unpredictable supply of cyprid larvae. Here, a protocol for the all-year-round culturing of B. improvisus is described, including the production of larvae. The use of cultured barnacles in gene expression studies is illustrated.

Barnacles are marine crustaceans with a sessile adult and free-swimming, planktonic larvae. The barnacle Balanus (Amphibalanus) improvisus is particularly ...

Individual Culturing of Tigriopus Copepods and Quantitative Analysis of Their Mate-guarding Behavior

Copepods of the genus Tigriopus, which are common zooplankton in rocky tide pools, show precopulatory mate-guarding behavior where a male clasps a potential mate to form a pair. While this phenomenon has attracted interest of researchers, methods for its analysis have not been well described. Here we describe procedures for: 1) individual culturing and staging of Tigriopus juveniles and adults, and 2) video-based analysis of their mate-guarding behavior. The culturing method enables experimental control of paring experience of animals as well as the ability to track their development before behavioral tests. The analysis method allows quantitative evaluation of several aspects of the mate-guarding behavior, including capturing attempts by males and swimming trajectory of mate-guarding pairs. Although these methods were originally established for ethological studies on Tigriopus, with proper modifications they can also be applied to studies of other zooplankton in different research fields, such as physiology, toxicology, and ecological genetics.

Individual Culturing of Tigriopus Copepods and Quantitative Analysis of Their Mate-guarding Behavior

Mate-guarding behavior plays an important role in reproduction of intertidal copepods of the genus Tigriopus. However, methods for studying this behavior have not been well described. Here we describe methods for: 1) individual culture of virgin Tigriopus animals, and 2) quantitative analysis of their mate-guarding behavior.

Copepods of the genus Tigriopus, which are common zooplankton in rocky tide pools, show precopulatory mate-guarding behavior where a male clasps a ...

Streamlined Sampling and Cultivation of the Pelagic Cosmopolitan Larvacean, Oikopleura dioica

Oikopleura dioica is a planktonic chordate with exceptional filter-feeding ability, rapid generation time, conserved early development, and a compact genome. For these reasons, it is considered a useful model organism for marine ecological studies, evolutionary developmental biology, and genomics. As research often requires a steady supply of animal resources, it is useful to establish a reliable, low-maintenance culture system. Here we describe a step-by-step method for establishing an O. dioica culture. We describe how to select potential sampling sites, collection methods, target animal identification, and the set-up of the culturing system. We provide troubleshooting advice based on our own experiences. We also highlight critical factors that help sustain a robust culture system. Although the culture protocol provided here is optimized for O. dioica, we hope our sampling technique and culture setup will inspire new ideas for maintaining other fragile pelagic invertebrates.

Streamlined Sampling and Cultivation of the Pelagic Cosmopolitan Larvacean, Oikopleura dioica

Oikopleura dioica is a tunicate model organism in various fields of biology. We describe sampling methods, species identification, culturing setup, and culturing protocols for the animals and algal feed. We highlight key factors that helped strengthen the culture system and discuss the possible problems and resolutions.

Oikopleura dioica is a planktonic chordate with exceptional filter-feeding ability, rapid generation time, conserved early development, and a compact ...

A Method for Extracting Pigments from Squid Doryteuthis pealeii

Cephalopods can undergo rapid and adaptive changes in dermal coloration for sensing, communication, defense, and reproduction purposes. These capabilities are supported in part by the areal expansion and retraction of pigmented organs known as chromatophores. While it is known that the chromatophores contain a tethered network of pigmented granules, their structure-function properties have not been fully detailed. We describe a method for isolating the nanostructured granules in squid Doryteuthis pealeii chromatophores and demonstrate how their associated pigments can be extracted in acidic solvents. To accomplish this, the chromatophore containing dermal layer is first manually isolated using a superficial dissection, and the pigment granules are removed using sonication, centrifugation, and washing cycles. Pigments confined within the purified granules are then extracted via acidic methanol solutions, leaving nanostructures with smaller diameters that are void of visible color. This extraction procedure produces a 58% yield of soluble pigments isolated from granules. Using this method, the composition of the chromatophore pigments can be determined and used to provide insight into the mechanism of adaptive coloration in cephalopods.

A Method for Extracting Pigments from Squid Doryteuthis pealeii

A protocol for the extraction of pigments from the nanostructured granules in squid Doryteuthis pealeii chromatophores is presented.

Cephalopods can undergo rapid and adaptive changes in dermal coloration for sensing, communication, defense, and reproduction purposes. These capabilities ...

Biology

Ex Situ Culture of Pocillopora acuta and Effective Feeding Techniques

Effective Techniques for the Feeding and Ex Situ Culture of a Brooding Scleractinian Coral, Pocillopora acuta

Climate change is affecting the survival, growth, and recruitment of corals globally, with large-scale shifts in abundance and community composition expected in reef ecosystems over the next several decades. Recognition of this reef degradation has prompted a range of novel research- and restoration-based active interventions. Ex situ aquaculture can play a supporting role through the establishment of robust coral culture protocols (e.g., to improve health and reproduction in long-term experiments) and through the provision of a consistent broodstock supply (e.g., for use in restoration projects). Here, simple techniques for the feeding and ex situ culture of brooding scleractinian corals are outlined using the common and well-studied coral, Pocillopora acuta, as an example. To demonstrate this approach, coral colonies were exposed to different temperatures (24 &#176;C vs. 28 &#176;C) and feeding treatments (fed vs. unfed) and the reproductive output and timing, as well as the feasibility of feeding Artemia nauplii to corals at both temperatures, was compared. Reproductive output showed high variation across colonies, with differing trends observed between the temperature treatments; at 24 &#176;C, fed colonies produced more larvae than unfed colonies, but the opposite was found in colonies cultured at 28 &#176;C. All colonies reproduced before the full moon, and differences in reproductive timing were only found between unfed colonies in the 28 &#176;C treatment and fed colonies in the 24 &#176;C treatment (mean lunar day of reproduction &#177; standard deviation: 6.5 &#177; 2.5 and 11.1 &#177; 2.6, respectively). The coral colonies fed efficiently on Artemia nauplii at both treatment temperatures. These proposed feeding and culture techniques focus on the reduction of coral stress and the promotion of reproductive longevity in a cost-effective and customizable manner, with versatile applicability in both flow-through and recirculating aquaculture systems.

Author Spotlight: Advancing Coral Research by Exploring Climate Change Resistance, Ex Situ Aquaculture, and Reproduction Strategies 

Climate change is impacting coral reef ecosystems globally. Corals sourced from ex situ aquaculture systems can help support restoration and research efforts. Herein, feeding and coral culture techniques that can be used to promote the long-term maintenance of brooding scleractinian corals ex situ are outlined.

Climate change is affecting the survival, growth, and recruitment of corals globally, with large-scale shifts in abundance and community composition ...

Culturing Larvae of Crepidula fornicata in Laboratory and Field Conditions

Laboratory and Field Culture of Larvae of The Slipper Limpet, Crepidula fornicata

The calyptraeid gastropod mollusk, Crepidula fornicata, has been widely used for studies of larval developmental biology, physiology, and ecology. Brooded veliger larvae of this species were collected by siphoning onto a sieve after natural release by adults, distributed into the culture at a density of 200/L, and fed with Isochrysis galbana (strain T-ISO) at 1 x 105 cells/mL. Shell growth and acquisition of competence for metamorphosis were documented for sibling larvae reared in ventilated 800 mL cultures designed for equilibration to ambient air or to defined atmospheric gas mixtures. Contrasting with these laboratory culture conditions; growth and competence data were also collected for larvae reared in a 15 L flow-through ambient seawater mesocosm located in a field population of reproductive adults. Growth rates and timing of metamorphic competence in the laboratory cultures were similar to those reported in previously published studies. Larvae reared in the field mesocosm grew much faster and metamorphosed sooner than reported for any laboratory studies. Together, these methods are suited for exploring larval development under predetermined controlled conditions in the laboratory as well as under naturally occurring conditions in the field.

Author Spotlight: Bridging the Gap Between Field Observations and Lab Manipulations in Larval Ecology Research

The paper presents methods for larval culture of the gastropod Crepidula fornicata in a small-volume laboratory-scale system and in an ambient-seawater mesocosm system that can be deployed in the field.

The calyptraeid gastropod mollusk, Crepidula fornicata, has been widely used for studies of larval developmental biology, physiology, and ecology. Brooded ...

Cultivation of the Marine Pelagic Tunicate Dolioletta gegenbauri (Uljanin 1884) for Experimental Studies

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