I am grateful to Dr. Masaru Fujimoto for his technical suggestions for VAEM. I am also grateful to Prof. Koh Iba and Dr. Mimi Hashimoto-Sugimoto for providing GFP-PATROL1 transgenic plants, and discussions about PATROL1. I thank Prof. Seiichiro Hasezawa for his continuing support of my work. This work was supported by the Japan Society for the Promotion of Science (JSPS) KAKENHI grant number 25711017.

Fidan 1. Hazırlık <ol><li> Tohum sterilize edin. <ol><li> Ve 1 ul% 10 Triton X-100 500 ul steril su: 500 ul NaClO (% 5.0 mevcut klorin) eklenerek sterilizasyon solüsyonu hazırlayın. </li><li> Yeri yaklaşık 10 transgenik A. Bir 1.5 ml tüp içine GFP PATROL1 8 taşıyan thaliana tohumları. </li><li> 1 ml% 70 etanol solüsyonu ekleyin ve beş kez ters yüz edilerek iyice karıştırın. 1 dakika boyunca bekletin. </li><li> Tohumlar tüpün dibine çöker gözlemleyin. Temiz bir laminer akış kabininde, yavaşça bir mikropipet kullanılarak% 70 etanolü çıkarmak ve 1 ml sterilizasyon çözeltisi ilave edilir. Beş kez tersini İyice karıştırın ve 5 dakika bekletin. </li><li> Tohum yıkayın. Hala temiz bir bankta aseptik koşullarda çalışan, yavaşça bir mikropipet kullanarak çözüm kaldırmak ve 1 ml steril su ekleyin. Bu beş kez tekrarlayın. Sterilize edilmiş tohumlara, 2 gün boyunca 4 ° C&#39;de steril su içinde depolanabilir. </li></ol></li><li> Yani% 0.5 gellan zamkı katılaşmış 1/2 Murashige ve Skoog levha (pH 5.8) 9 sterilize edilmiş tohumlar, w. Cerrahi bant iki kat kullanarak plaka üzerine kapağı bantlayın. </li><li> Soğuk depolama odası O / N 4 ° C&#39;de karanlıkta plaka inkübe edin. </li><li> 100 umol m-2 sec -1 beyaz ışık kullanarak 12 saat / 12 saatlik bir ışık-karanlık çevrimi ile 23.5 ° C &#39;ye ayarlanmış bir büyütme odasında içine plaka aktarın ve 7 gün boyunca inkübe edilir. Uzun yaklaşık 1 mm kotiledonlarında fideler daha sonra hasat edilebilir. </li></ol> 2. Sky Drop Kotiledon Örnekler montajı NOT: VAEM gözlem numune hazırlama önemli bir faktör numune ve kapak cam arasındaki hava kabarcıkları dahil kaçınmaktır. Kabarcıklar ölçüde kırılma indeksi farklılıkları yol açarak VAEM görüntü kalitesini azaltır. Biz montaj &#39;gökyüzü bırak&#39; çağrısında bulundu basit bir yöntem, kabarcıkları önlemek için de kullanılabilirA arasında thaliana Kotiledonlar ve kapak cam. Bu gözlem hemen önce yapılmalıdır. <ol><li> 76: Bazal tampon [5 mM 2- (N-morfolino) -etansülfonik pH 6.5&#39;te asit tris (MES-Tris), 50 mM KCI, 100 uM CaCl2] Bir cam slayt ortasına (boyut 30 ul koyun × 26 mm, kalınlığı: 1.0-1.2 mm). </li><li> Diseksiyon makas kullanarak 7 günlük bir fide bir kotiledon çıkarın. Gözlem tarafı bazal tampon damla (Şekil 1, aşama 1) üzerinde yukarı bakacak şekilde kotiledon kaydırın. </li><li> Bir kapak cam ortasına bazal tampon 30 ul yerleştirin (boyut: 18 × 18 mm, kalınlığı: 0,12-0,17 mm) (Şekil 1, adım 2). Başaşağı hafifçe cam kapak çevirin. Yüzey gerilimi düşmesini tampon damla önleyecektir. Bir kenarında cımbızla cam kapak tutun. Tampon damla yaklaşık kotiledon üstünde olacak şekilde cam slayt karşı kenarını yerleştirin. </li><li>Bu kotiledon örnek (Şekil 1, aşama 3) üzerinde yer almaktadır, böylece sürgü hala, kapak camın kenarına ve hala cımbız ile karşı kenarını tutarken, kapak camı altında tamponu damla konumunu ayarlamak. Kapak cam gidelim. Hava kabarcığı olmadan bir hazırlık sonucunda numune üzerinde bir damla monte edin. </li><li> Havsız dokuları kullanılarak aşırı tampon siliniz. Hemen hazırlık gözlemleyin (adım 3). NOT: örnekleri mühür gerek yoktur. </li></ol> 3. VAEM Gözlem ve Toplama Film Bir ters mikroskop, bir TIRF ünitesi ve 1.49 sayısal diyafram ile bir TIRF objektif lens ile donatılmıştır: NOT: aşağıdaki gibi bu çalışmada kullanılan TIRF mikroskop sistemi 9 açıklanmıştır. Lazer giriş açısının bilgisayarlı kontrol için, bir kontrol kutusu kullanılır. Yeşil floresan proteini (GFP) 488 nm optik pompalanan yarıiletken lazer ve t ile heyecanlıO floresans kloroplast gelen otoflüoresanı önlemek için 510-550 nm bant-geçiş filtresi içinden tespit edilir. Fiber çıkış gücü ölçülen maksimum değeri 13,0-13,5 mW olduğunu. Tespiti için, bir elektron kullanılır (EM-CCD) kamera kafası sistemi ve bir C-mount kamera büyütme değişim ünitesi şarj çiftli cihaz çarparak. <ol><li> Lazer üreticinin talimatlarına göre merkezleme ve odaklama kalibrasyonu. Not: Bu adım hassas VAEM gözlemleri için çok önemlidir. Kuvvetle lazer yolu ayar prosedürlerinin periyodik kontroller, mikroskop uygun, yürütülmektedir tavsiye edilir. <ol><li> Mikroskopi odasının tavanında bir objektif lens içermeyen ışık yolu ile aydınlatılmış merkezi konumunu belirleyin. Merkezi konumunu işaretlemek için, tavanda renkli daire mühür koymak (Şekil 2, adım 1, 2). </li><li> Objektif lensi (Şekil 2, aşama 3, 4) sahip tavan yakma. I Taşıorta konumda (Şekil 2, adım 5) &#39;bölgesini lluminated. Lazer (Şekil 2, Adım 6) odaklanın. Ince ayar yapma merkezi (Şekil 2, basamak 7) odaklanmış lazer konumu. </li></ol></li><li> Mikroskop sahnede bir örnek olarak ayarlayın ve parlak alan aydınlatma kullanılarak gözlem hücreleri seçin. </li><li> Floresan protein hücrelerinde görülebilir kontrol edin ve Epifloresans aydınlatma (Şekil 3A) kullanılarak hücre yüzeyinde z -Axis konumunu ayarlamak. </li><li> VAEM gözlemleri gerçekleştirin. <ol><li> Denetleyici kutusu ile yavaş yavaş lazer ışınının giriş açısı eğim. Aynı zamanda, özenle canlı görüntüyü izlemek. Başlangıçta, görüntü (Şekil 3B) bulanık olacaktır. </li><li> Lazer açısı arttıkça, VAEM görüntü sonunda net bir görüntü (Şekil 3C ve D) üreten, daha az bulanık hale gelecektir. Bu noktada, increa durdurmaLazer açısını şarkı. Floresan sinyali kaybolursa, sığ açı azalır. </li><li> İnce ayar lazer giriş açısı daha iyi bir görüntü elde etmek için. İnce ayar z -Axis pozisyon da imajını artırabilir. Gerekirse, optik parametreleri (lazer gücü, dalga boyu ve filtre seti) ve görüntü sensörü parametrelerini [görüntü boyutu, pozlama süresi, kazanç, sayısallaştırıcı ve elektron-çarparak (EM) kazanç] ayarlayın. NOT: TIRF mikroskop ekipman durumda yukarıda açıklanan aşağıdaki gibi, temsilci parametrelerdir. Sadece kamera önünde lens Büyütme: 2X; Lazer çıkışı: 1.0 mW; Resim boyutu: 512 × 512 piksel; Pozlama süresi: 100 ms; Kazanç: 5 ×; Dijitalleştirici: 11 MHz; ve EM kazanç: 100. </li></ol></li><li> Ticari mikroskop yazılımını kullanarak çok sayfalı TIFF görüntü dosyası olarak film edinin. Burada, film stoma hücrelerinin yüzeyi üzerinde yanıp sönen GFP-etiketli noktalar taşımaktadır. NOT: Temsili görüntü alma koşulları fol gibidiralçak. Toplama Modu: Akış RAM&#39;e; Kare sayısı: 600; ve çoklu sayfa TIFF dosya boyutu: ~ 302 MB. </li></ol> 4. kymograph Analizi Niceleme için GFP etiketli Dot Residence Time Fiji Yazılım Kullanma <ol><li> Fiji Install yazarların yönergeleri kullanarak yazılım 10 (&#39;Fiji Just ImageJ olduğu&#39;) (http://fiji.sc/Fiji). </li><li> Fiji çalıştırın ve Fiji menüsü &quot;Dosya-Aç&quot; kullanılarak elde çoklu sayfa TIFF dosyasını açın. </li><li> Fiji araç çubuğu menüsü &quot;Düz Çizgi Seçim Aracı&quot; seçeneğini kullanarak, ilgi sitede bir çizgi yerleştirin. İsteğe bağlı olarak, &quot;Segment Hattı Seçim Aracı&quot; veya &quot;Serbest Hattı Seçim Aracı&quot; kullanın. Burada sunulan sonuçlar şekilde, (8.0 um karşı gelen) 100 piksellik bir düz çizgi bir yan hücre (Şekil 4A) üzerine yerleştirilmiştir. </li><li> Fiji menüsü &quot;Resim-Yığınları-Dinamik Reslice kullanarak bir kymograph görüntü olun </em&gt; &quot;(http://fiji.sc/Dynamic_Reslice) (Şekil 4B). İsteğe bağlı olarak, bir onay kutusu penceresinde ve &quot;Döndür 90 Degrees&quot; &quot;Dikey Döndürme&quot; de (100 piksel tekabül (Burada sunulan sonuçlar kullanılmaz) kymograph görüntüde. X ve y ekseni hattı konumunu belirtmek mevcuttur 8.0 mikron) ve gözlem süresi (600 piksel sırasıyla) 60 saniyeye tekabül etmektedir. kymograph görüntü tatmin edici değilse, pozisyon ve tip (düz, parçalı ve çok sayfalı görüntü hattın serbest) gibi. değiştirilebilir çizgi değişikliği, kymograph görüntü dinamik olarak değişir. Fiji menüsü &quot;Dosya-Farklı Kaydet-Tiff&quot; kullanarak bir TIFF dosyası olarak bir kymograph görüntüsünü kaydedin. </li><li> Zaman ekseni yönde blob uzunluğunu ölçün. <ol><li> Gürültü azaltma gerçekleştirmek için, Fiji menüsü &quot;Süreç Filtreler-Gaussian Blur&quot; seçeneğini kullanarak kymograph görüntüleri Gauss filtre uygulamak. &quot;Sigma (Radius) &quot;parametresi ayarlanabilir (1 piksel yarıçapı sunulan sonuçlar için kullanılan) &#39;dir. </li><li> Segment Fiji menüsünü kullanarak eşikleme sinyal bölgeleri, &quot;Resim-ayarlayın-Eşik&quot;. NOT: Aralarından seçim yapabileceğiniz çeşitli eşikleme algoritması vardır. Sunulan sonuçlarda, &quot;Yen&quot; algoritması (Şekil 4C) seçildi. </li><li> Menüsünü kullanarak blob&#39;un -Axis uzunluğu süresi (y) ölçmek için hazırlanın &quot;Analiz-Set Ölçümleri&quot;. &quot;Set Ölçümleri&quot; penceresindeki &quot;Sınırlayıcı dikdörtgen&quot; seçeneğini işaretleyin. İdeal Alan seti gürültü çıkarmak, mümkün olduğunca küçük olmalıdır. Burada asgari alan 50 piksel olarak belirlendi. Zaman (y) menüsünü kullanarak blob&#39;un -Axis uzunluğunu ölçün &quot;Analiz-Analiz Parçacıklar&quot;. Yöneticisi Ekle &quot;sonuç değerleri elde ve ölçüm bölgelerinin güvenilirliğini kanıtlamak,&quot; sonuçlarını görüntüle &quot;kontrol etmek ve &lt;/ em&gt; &quot;kutuları. </li><li> &quot;Yükseklik&quot; sütununda değerler (y) ölçülen damla (Şekil 4D) için uzunlukları -Axis zaman vardır. Sonuçlar tablo menüsü &quot;Dosya-Farklı Kaydet&quot; seçeneğini kullanarak değerleri kaydetmek ve hesaplanması ve istatistiksel paket ve / veya elektronik tablo yazılımı (Şekil 4E) kullanarak blob görüntü süreleri veri kümesi işlemek. </li></ol></li></ol>

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Yazar ifşa ilgisi yoktur.

Bu video makalede, protokoller izlenmesi ve Arabidopsis thaliana&#39;nın stoma kompleksi üzerine GFP-PATROL1 noktaların dinamik davranışını ölçmek için verilmiştir. Burada gösterildiği gibi, VAEM gözlem bitki hücre yüzeylerinin canlı görüntüleme için güçlü bir araçtır. Son derece hassas EM CCD VAEM optik bir nispeten zayıf uyarım lazer kullanımına izin verir, çünkü GFP PATROL1 izlenmesi için kullanılan deney koşulları altında, bir video yakalama 1 dakika için kullanılan n...

The plant cell surface, including the plasma membrane and its immediately adjacent cytoplasm, is the main region of a plant cell&#8217;s perception and integration of biotic and abiotic cues from the extracellular environment. In response to these cues, cell surface components including plasma membrane proteins and the cortical cytoskeleton undergo dynamic changes, on a time scale of seconds to minutes1-4. Thus, real-time and high-resolution imaging of fluorescent proteins on the cell surface can illuminate a plant&#8217;s responses to environmental cues at the molecular level.
Confocal laser scanning microscopy is a powerful tool for determination of fluorescently-tagged protein localization3, however, it is often difficult to monitor the real-time protein dynamics because of its relatively long capturing times. An emerging technique for real-time monitoring of proteins in the plant cell is variable angle epifluorescence microscopy (VAEM), which is an adaptation of equipment usually used for total internal reflection fluorescence (TIRF) microscopy. In TIRF microscopy, the fluorescence-excitation light source is an evanescent light field that is generated when the entry angle of the laser is shallow enough to totally internally reflect light at the glass&#8211;water interface. The penetration depth of the evanescent light field is around 100 nm. TIRF microscopy is an outstanding tool for single molecule imaging, such as the detection of exocytosis in animal cells5. However, evanescent light cannot reach plasma membranes or the cortical cytoplasm in plant cells, because they have thick cell walls. Recently, TIRF microscopy equipment has been adapted by plant cell biologists, observing that a laser, if angled slightly more deeply than when being used to induce total internal reflection phenomena, could excite the surface of plant cell samples, resulting in high-quality plant cell imaging6,7. The excitation illumination depth is varied by adjusting the entry angle of the laser; therefore, this technique is described as VAEM. This optical system is also called variable angle TIRF microscopy (VA-TIRFM) because there is a possibility that total reflection may take place at the cell wall-periplasm interface7, however, the term VAEM is used in this article, as per the first report in plants6.
The goal of this protocol is to demonstrate practical procedures for using VAEM to visualize fluorescently-tagged protein dynamics on plant cell surfaces. Additionally, an image analysis protocol to quantify the residence time (duration of presence) of molecules is described for VAEM movie analysis. GFP-PATROL1 dot blinking on stomatal complex cells in Arabidopsis thaliana cotyledons is used as an example. PATROL1 was identified by forward genetic approaches as a causal gene of a stomatal response defect mutant in A. thaliana8. PATROL1 is a plant homolog of MUNC-13, which is a priming factor in synapse vesicle exocytosis8. In response to environmental cues, such as light or humidity, it is thought that PATROL1 reversibly regulates the delivery of a proton pump to plasma membranes in the stomatal complex. Stomatal complexes each comprise a pair of guard cells8 and subsidiary cells9, and they require a proton pump for stomatal movement. In these cells, GFP-tagged PATROL1 localizes to dot-like structures that remain on the plasma membrane for less than 1 min9.

<table border="0" cellpadding="0" cellspacing="0" width="573">
	<tbody>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">Inverted microscope</td>
			<td style="width:71px;">Olympus</td>
			<td style="width:119px;">IX-73</td>
			<td style="width:167px;"></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">TIRF unit</td>
			<td style="width:71px;">Olympus</td>
			<td style="width:119px;">IX3-RFAEVAW</td>
			<td></td>
		</tr>
		<tr height="42">
			<td height="42" style="height:42px;width:216px;">TIRF objective lens&#160;</td>
			<td style="width:71px;">Olympus</td>
			<td style="width:119px;">UAPON 100 &#215; OTIRF&#160;</td>
			<td>NA = 1.49</td>
		</tr>
		<tr height="42">
			<td height="42" style="height:42px;width:216px;">Laser angle control box</td>
			<td style="width:71px;">Chuo Seiki</td>
			<td style="width:119px;">QT-AK</td>
			<td></td>
		</tr>
		<tr height="64">
			<td height="64" style="height:64px;width:216px;">Optically pumped semiconductor laser</td>
			<td style="width:71px;">Coherent</td>
			<td style="width:119px;">SapphireTM LP USB 488-20 CDRH Laser</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">510&#8211;550 nm band-pass filter</td>
			<td style="width:71px;">Olympus</td>
			<td style="width:119px;">U-FBNA</td>
			<td></td>
		</tr>
		<tr height="63">
			<td height="63" style="height:63px;width:216px;">EM CCD camera</td>
			<td style="width:71px;">Hamamatsu Photonics</td>
			<td style="width:119px;">ImagEM C9100-13</td>
			<td></td>
		</tr>
		<tr height="42">
			<td height="42" style="height:42px;width:216px;">C-mount camera magnification change unit&#160;</td>
			<td style="width:71px;">Olympus</td>
			<td style="width:119px;">U-TVCAC</td>
			<td></td>
		</tr>
		<tr height="42">
			<td height="42" style="height:42px;width:216px;">MetaMorph software</td>
			<td style="width:71px;">Molecular Devices</td>
			<td style="width:119px;">MetaMorph version 7.7.11.0</td>
			<td></td>
		</tr>
		<tr height="105">
			<td height="105" style="height:105px;width:216px;">TIRF microscopy manual</td>
			<td style="width:71px;">Olympus</td>
			<td style="width:119px;">AX7385</td>
			<td style="width:167px;">Instructions: Total Internal Reflection Illumination System (Printed in Japan on August 24, 2012)</td>
		</tr>
		<tr height="42">
			<td height="42" style="height:42px;width:216px;">Immersion oil</td>
			<td style="width:71px;">Olympus</td>
			<td style="width:119px;">Immersion Oil Typr-F</td>
			<td>ne = 1.518 (23 degrees)</td>
		</tr>
	</tbody>
</table>

real-time imaging of plant cell surface dynamics with variable-angle epifluorescence microscopy

A plant&#8217;s cell surface is its interface for perceiving environmental cues; it responds with cell biological changes such as membrane trafficking and cytoskeletal rearrangement. Real-time and high-resolution image analysis of such intracellular events will increase the understanding of plant cell biology at the molecular level. Variable angle epifluorescence microscopy (VAEM) is an emerging technique that provides high-quality, time-lapse images of fluorescently-labeled proteins on the plant cell surface. In this article, practical procedures are described for VAEM specimen preparation, adjustment of the VAEM optical system, movie capturing and image analysis. As an example of VAEM observation, representative results are presented on the dynamics of PATROL1. This is a protein essential for stomatal movement, thought to be involved in proton pump delivery to plasma membranes in the stomatal complex of Arabidopsis thaliana. VAEM real-time observation of guard cells and subsidiary cells in A. thaliana cotyledons showed that fluorescently-tagged PATROL1 appeared as dot-like structures on plasma membranes for several seconds and then disappeared. Kymograph analysis of VAEM movie data determined the time distribution of the presence (termed &#8216;residence time&#8217;) of the dot-like structures. The use of VAEM is discussed in the context of this example.

Bu video makalede, A. GFP-PATROL1 ve VAEM gözlem için protokollerde yer thaliana kotiledon stoma karmaşık hücrelerin sağlanmaktadır. Gökyüzü açılan montaj A. VAEM hazırlıkları hava kabarcıklarının oluşumunu azaltmaya yardımcı olabilir basit bir hazırlık yöntemi thaliana kotiledonları (Şekil 1). Giriş lazer ve / veya VAEM için numunelerin z-konumlandırma Overtilting belirsiz bir görüntü sağlayacaktır. Eğer bu gerçekleşirse, bu Epifl...

Watch this Scientific Journal Video about Real-time Imaging of Plant Cell Surface Dynamics with Variable-angle Epifluorescence Microscopy at JoVE.com

Real-time Imaging of Plant Cell Surface Dynamics with Variable-angle Epifluorescence Microscopy

Bu protokolün amacı stoma kompleksinin hücre korteks içinde, GFP etiketli PATROL1, bir membran kaçakçılığı protein noktalar yanıp sönen gösteren değişken açılı Epifloresans mikroskobu ile bitki hücre yüzeylerinde floresan etiketli protein dinamikleri izlemek için nasıl göstermek için Arabidopsis thaliana.

Değişken açılı Epifloresans Mikroskopi ile Bitki Hücre Yüzey Dynamics Gerçek zamanlı Görüntüleme

A plant&#8217;s cell surface is its interface for perceiving environmental cues; it responds with cell biological changes such as membrane trafficking and ...

real-time-imaging-plant-cell-surface-dynamics-with-variable-angle

Research

JoVE Journal

Biology

8.9K Görüntüleme.  The University of Tokyo.  Bu protokolün amacı stoma kompleksinin hücre korteks içinde, GFP etiketli PATROL1, bir membran kaçakçılığı protein noktalar yanıp sönen gösteren değişken açılı Epifloresans mikroskobu ile bitki hücre yüzeylerinde floresan etiketli protein dinamikleri izlemek için nasıl göstermek için Arabidopsis thaliana. 

Video: Real-time Imaging of Plant Cell Surface Dynamics with Variable-angle Epifluorescence Microscopy

Live Cell Imaging of F-actin Dynamics via Fluorescent Speckle Microscopy (FSM)

In this protocol we describe the use of Fluorescent Speckle Microscopy (FSM) to capture high-resolution images of actin dynamics in PtK1 cells. A unique advantage of FSM is its ability to capture the movement and turnover kinetics (assembly/disassembly) of the F-actin network within living cells. This technique is particularly useful in deriving quantitative measurements of F-actin dynamics when paired with computer vision software (qFSM).  We describe  the selection, microinjection and visualization of fluorescent actin probes in living cells. Importantly, similar procedures are applicable to visualizing other macomolecular assemblies. FSM has been demonstrated for microtubules, intermediate filaments, and adhesion complexes.  

Live Cell Imaging of F-actin Dynamics via Fluorescent Speckle Microscopy FSM

Selection, microinjection, and imaging of fluorescently-labeled F-actin via fluorescent speckle microscopy (FSM).

Floresan üzerinden F-aktin Dynamics Canlı Hücre Görüntüleme speckle Mikroskopi (FSM)

In this protocol we describe the use of Fluorescent Speckle Microscopy (FSM) to capture high-resolution images of actin dynamics in PtK1 cells. A unique ...

Biyoloji

Assembly, Loading, and Alignment of an Analytical Ultracentrifuge Sample Cell

The analytical ultracentrifuge (AUC) is a powerful biophysical tool that allows us to record macromolecular sedimentation profiles during high speed centrifugation. When properly planned and executed, an AUC sedimentation velocity or sedimentation equilibrium experiment can reveal a great deal about a protein in regards to size and shape, sample purity, sedimentation coefficient, oligomerization states and protein-protein interactions.
This technique, however, requires a rigorous level of technical attention. Sample cells hold a sectored center piece sandwiched between two window assemblies. They are sealed with a torque pressure of around 120-140 in/lbs. Reference buffer and sample are loaded into the centerpiece sectors and then after sealing, the cells are precisely aligned into a titanium rotor so that the optical detection systems scan both sample and reference buffer in the same radial path midline through each centerpiece sector while rotating at speeds of up to 60, 000 rpm and under very high vacuum
Not only is proper sample cell assembly critical, sample cell components are very expensive and must be properly cared for to ensure they are in optimum working condition in order to avoid leaks and breakage during experiments. Handle windows carefully, for even the slightest crack or scratch can lead to breakage in the centrifuge. The contact between centerpiece and windows must be as tight as possible; i.e. no Newton s rings should be visible after torque pressure is applied. Dust, lint, scratches and oils on either the windows or the centerpiece all compromise this contact and can very easily lead to leaking of solutions from one sector to another or leaking out of the centerpiece all together. Not only are precious samples lost, leaking of solutions during an experiment will cause an imbalance of pressure in the cell that often leads to broken windows and centerpieces. In addition, plug gaskets and housing plugs must be securely in place to avoid solutions being pulled out of the centerpiece sector through the loading holes by the high vacuum in the centrifuge chamber. Window liners and gaskets must be free of breaks and cracks that could cause movement resulting in broken windows.
This video will demonstrate our procedures of sample cell assembly, torque, loading and rotor alignment to help minimize component damage, solution leaking and breakage during the perfect AUC experiment.

The analytical ultracentrifuge (AUC) sample cell holds sample and reference buffer and during experiments and is exposed to high vacuum and rotor speeds up to 60,000 rpm. This video will demonstrate the rigorous attention to detail necessary for assembly, loading and alignment of this very important component of an AUC experiment.

Kurul, Yükleme ve Analitik ultrasantrifüjdeki Örnek Hücre Hizalama

The analytical ultracentrifuge (AUC) is a powerful biophysical tool that allows us to record macromolecular sedimentation profiles during high speed ...

Avidity-based Extracellular Interaction Screening (AVEXIS) for the Scalable Detection of Low-affinity Extracellular Receptor-Ligand Interactions

Extracellular protein:protein interactions between secreted or membrane-tethered proteins are critical for both initiating intercellular communication and ensuring cohesion within multicellular organisms. Proteins predicted to form extracellular interactions are encoded by approximately a quarter of human genes1, but despite their importance and abundance, the majority of these proteins have no documented binding partner. Primarily, this is due to their biochemical intractability: membrane-embedded proteins are difficult to solubilise in their native conformation and contain structurally-important posttranslational modifications. Also, the interaction affinities between receptor proteins are often characterised by extremely low interaction strengths (half-lives &lt; 1 second) precluding their detection with many commonly-used high throughput methods2. 
Here, we describe an assay, AVEXIS (AVidity-based EXtracellular Interaction Screen) that overcomes these technical challenges enabling the detection of very weak protein interactions (t1/2 &le; 0.1 sec) with a low false positive rate3. The assay is usually implemented in a high throughput format to enable the systematic screening of many thousands of interactions in a convenient microtitre plate format (Fig. 1). It relies on the production of soluble recombinant protein libraries that contain the ectodomain fragments of cell surface receptors or secreted proteins within which to screen for interactions; therefore, this approach is suitable for type I, type II, GPI-linked cell surface receptors and secreted proteins but not for multipass membrane proteins such as ion channels or transporters.
The recombinant protein libraries are produced using a convenient and high-level mammalian expression system4, to ensure that important posttranslational modifications such as glycosylation and disulphide bonds are added. Expressed recombinant proteins are secreted into the medium and produced in two forms: a biotinylated bait which can be captured on a streptavidin-coated solid phase suitable for screening, and a pentamerised enzyme-tagged (&beta;-lactamase) prey. The bait and prey proteins are presented to each other in a binary fashion to detect direct interactions between them, similar to a conventional ELISA (Fig. 1). The pentamerisation of the proteins in the prey is achieved through a peptide sequence from the cartilage oligomeric matrix protein (COMP) and increases the local concentration of the ectodomains thereby providing significant avidity gains to enable even very transient interactions to be detected. By normalising the activities of both the bait and prey to predetermined levels prior to screening, we have shown that interactions having monomeric half-lives of 0.1 sec can be detected with low false positive rates3.

Avidity-based Extracellular Interaction Screening AVEXIS for the Scalable Detection of Low-affinity Extracellular Receptor-Ligand Interactions

AVEXIS is a high throughput protein interaction assay developed to systematically screen for novel extracellular receptor-ligand pairs involved in cellular recognition processes. It is specifically designed to detect transient protein interactions that are difficult to identify using other high throughput approaches.

Düşük afiniteli Ekstrasellüler Reseptör-ligand Etkileşimlerinin Ölçeklenebilir Algılama için Avidite tabanlı Ekstrasellüler Etkileşim Gösterimi (AVEXIS)

Extracellular protein:protein interactions between secreted or membrane-tethered proteins are critical for both initiating intercellular communication and ...

Tandem High-pressure Freezing and Quick Freeze Substitution of Plant Tissues for Transmission Electron Microscopy

Since the 1940s transmission electron microscopy (TEM) has been providing biologists with ultra-high resolution images of biological materials. Yet, because of laborious and time-consuming protocols that also demand experience in preparation of artifact-free samples, TEM is not considered a user-friendly technique. Traditional sample preparation for TEM used chemical fixatives to preserve cellular structures. High-pressure freezing is the cryofixation of biological samples under high pressures to produce very fast cooling rates, thereby restricting ice formation, which is detrimental to the integrity of cellular ultrastructure. High-pressure freezing and freeze substitution are currently the methods of choice for producing the highest quality morphology in resin sections for TEM. These methods minimize the artifacts normally associated with conventional processing for TEM of thin sections. After cryofixation the frozen water in the sample is replaced with liquid organic solvent at low temperatures, a process called freeze substitution. Freeze substitution is typically carried out over several days in dedicated, costly equipment. A recent innovation allows the process to be completed in three hours, instead of the usual two days. This is typically followed by several more days of sample preparation that includes infiltration and embedding in epoxy resins before sectioning. Here we present a protocol combining high-pressure freezing and quick freeze substitution that enables plant sample fixation to be accomplished within hours. The protocol can readily be adapted for working with other tissues or organisms. Plant tissues are of special concern because of the presence of aerated spaces and water-filled vacuoles that impede ice-free freezing of water. In addition, the process of chemical fixation is especially long in plants due to cell walls impeding the penetration of the chemicals to deep within the tissues. Plant tissues are therefore particularly challenging, but this protocol is reliable and produces samples of the highest quality.

Obtaining high-quality transmission electron microscopy images is challenging, especially in the case of plant cells, which have abundant large water-filled vacuoles and aerated spaces. Tandem high-pressure freezing and quick freeze substitution greatly reduce preparation time of plant samples for TEM while producing samples with excellent ultrastructural preservation.

Tandem Yüksek basınçlı Donma ve Transmisyon Elektron Mikroskobu için Bitki Doku Hızlı Dondurma Değişiklik

Since the 1940s transmission electron microscopy (TEM) has been providing biologists with ultra-high resolution images of biological materials. Yet, ...

Real Time Measurements of Membrane Protein:Receptor Interactions Using Surface Plasmon Resonance (SPR)

Protein-protein interactions are pivotal to most, if not all, physiological processes, and understanding the nature of such interactions is a central step in biological research. Surface Plasmon Resonance (SPR) is a sensitive detection technique for label-free study of bio-molecular interactions in real time. In a typical SPR experiment, one component (usually a protein, termed 'ligand') is immobilized onto a sensor chip surface, while the other (the 'analyte') is free in solution and is injected over the surface. Association and dissociation of the analyte from the ligand are measured and plotted in real time on a graph called a sensogram, from which pre-equilibrium and equilibrium data is derived. Being label-free, consuming low amounts of material, and providing pre-equilibrium kinetic data, often makes SPR the method of choice when studying dynamics of protein interactions. However, one has to keep in mind that due to the method's high sensitivity, the data obtained needs to be carefully analyzed, and supported by other biochemical methods. 
SPR is particularly suitable for studying membrane proteins since it consumes small amounts of purified material, and is compatible with lipids and detergents. This protocol describes an SPR experiment characterizing the kinetic properties of the interaction between a membrane protein (an ABC transporter) and a soluble protein (the transporter's cognate substrate binding protein).

Real Time Measurements of Membrane Protein:Receptor Interactions Using Surface Plasmon Resonance SPR

Surface Plasmon Resonance (SPR) is a label-free method for detecting bio-molecular interactions in real time. Herein, a protocol for a membrane protein:receptor interaction experiment is described, while discussing the pros and cons of the technique.

Membran Protein Gerçek zamanlı ölçümler: Reseptör Etkileşimleri Yüzey Plazmon Rezonans Kullanma (SPR)

Protein-protein interactions are pivotal to most, if not all, physiological processes, and  understanding the nature of such interactions is a central ...

Visualizing Stromule Frequency with Fluorescence Microscopy

Stromules, or "stroma-filled tubules", are narrow, tubular extensions from the surface of the chloroplast that are universally observed in plant cells but whose functions remain mysterious. Alongside growing attention on the role of chloroplasts in coordinating plant responses to stress, interest in stromules and their relationship to chloroplast signaling dynamics has increased in recent years, aided by advances in fluorescence microscopy and protein fluorophores that allow for rapid, accurate visualization of stromule dynamics. Here, we provide detailed protocols to assay stromule frequency in the epidermal chloroplasts of Nicotiana benthamiana, an excellent model system for investigating chloroplast stromule biology. We also provide methods for visualizing chloroplast stromules in vitro by extracting chloroplasts from leaves. Finally, we outline sampling strategies and statistical approaches to analyze differences in stromule frequencies in response to stimuli, such as environmental stress, chemical treatments, or gene silencing. Researchers can use these protocols as a starting point to develop new methods for innovative experiments to explore how and why chloroplasts make stromules.

Protocols to investigate the dynamics of chloroplast stromules, the stroma-filled tubules that extend from the surface of chloroplasts, are described.

Floresan Mikroskopi ile Stromule Frekansı görselleştirme

Stromules, or "stroma-filled tubules", are narrow, tubular extensions from the surface of the chloroplast that are universally observed in plant cells but ...

Light Sheet Fluorescence Microscopy of Plant Roots Growing on the Surface of a Gel

One of the key questions in understanding plant development is how single cells behave in a larger context of the tissue. Therefore, it requires the observation of the whole organ with a high spatial- as well as temporal resolution over prolonged periods of time, which may cause photo-toxic effects. This protocol shows a plant sample preparation method for light-sheet microscopy, which is characterized by mounting the plant vertically on the surface of a gel. The plant is mounted in such a way that the roots are submerged in a liquid medium while the leaves remain in the air. In order to ensure photosynthetic activity of the plant, a custom-made lighting system illuminates the leaves. To keep the roots in darkness the water surface is covered with sheets of black plastic foil. This method allows long-term imaging of plant organ development in standardized conditions.

This protocol shows a plant sample preparation method for light-sheet microscopy. The setup is characterized by mounting the plant vertically on the surface of a gel and letting it grow in controlled bright conditions. This allows long-term observation of plant organ development in standardized conditions.

Bir Gel Yüzeyinde Büyüyen Bitki kökleri Işık Sac Flüoresan Mikroskopi

One of the key questions in understanding plant development is how single cells behave in a larger context of the tissue. Therefore, it requires the ...

Flash-and-Freeze: A Novel Technique to Capture Membrane Dynamics with Electron Microscopy

Cells constantly change their membrane architecture and protein distribution, but it is extremely difficult to visualize these events at a temporal and spatial resolution on the order of ms and nm, respectively. We have developed a time-resolved electron microscopy technique, &#34;flash-and-freeze,&#34; that induces cellular events with optogenetics and visualizes the resulting membrane dynamics by freezing cells at defined time points after stimulation. To demonstrate this technique, we expressed channelrhodopsin, a light-sensitive cation channel, in mouse hippocampal neurons. A flash of light stimulates neuronal activity and induces neurotransmitter release from synaptic terminals through the fusion of synaptic vesicles. The optogenetic stimulation of neurons is coupled with high-pressure freezing to follow morphological changes during synaptic transmission. Using a commercial instrument, we captured the fusion of synaptic vesicles and the recovery of the synaptic vesicle membrane. To visualize the sequence of events, large datasets were generated and analyzed blindly, since morphological changes were followed in different cells over time. Nevertheless, flash-and-freeze allows the visualization of membrane dynamics in electron micrographs with ms temporal resolution.

We developed a novel technique in electron microscopy, &#34;flash-and-freeze,&#34; that enables the visualization of membrane dynamics with ms temporal resolution. This technique combines the optogenetic stimulation of neurons with high-pressure freezing. Here, we demonstrate the procedures and describe the protocols in detail.

Flaş-ve-Freeze: Elektron Mikroskobu ile Membran Dinamikler Yakalama Yeni Bir Tekniği

Cells constantly change their membrane architecture and protein distribution, but it is extremely difficult to visualize these events at a temporal and ...

Confocal Microscopy Reveals Cell Surface Receptor Aggregation Through Image Correlation Spectroscopy

Confocal microscopy provides an accessible methodology to capture sub-cellular interactions critical for the characterization and further development of pre-clinical agents labeled with fluorescent probes. With recent advancements in antibody based cytotoxic drug delivery systems, understanding the alterations induced by these agents within the realm of receptor aggregation and internalization is of critical importance. This protocol leverages the well-established methodology of fluorescent immunocytochemistry and the open source FIJI distribution of ImageJ, with its inbuilt autocorrelation and image mathematical functions, to perform spatial image correlation spectroscopy (ICS). This protocol quantitates the fluorescent intensity of labeled receptors as a function of the beam area of the confocal microscope. This provides a quantitative measure of the state of target molecule aggregation on the cell surface. This methodology is focused on the characterization of static cells with potential to expand into temporal investigations of receptor aggregation. This protocol presents an accessible methodology to provide quantification of clustering events occurring at the cell surface, utilizing well established techniques and non-specialized imaging apparatus.

Antibodies that bind to target receptors on the cell surface can confer conformation and clustering alterations. These dynamic changes have implications for characterizing drug development in target cells. This protocol utilizes confocal microscopy and image correlation spectroscopy through ImageJ/FIJI to quantify the extent of receptor clustering on the cell surface.

Confocal mikroskobu ortaya hücre yüzey reseptör toplama görüntü korelasyon spektroskopisi ile

Confocal microscopy provides an accessible methodology to capture sub-cellular interactions critical for the characterization and further development of ...

Oligomerization Dynamics of Cell Surface Receptors in Living Cells by Total Internal Reflection Fluorescence Microscopy Combined with Number and Brightness Analysis

Despite the importance and ubiquity of receptor oligomerization, few methods are applicable for detecting clustering events and measuring the degree of clustering. Here, we describe an imaging approach to determine the average oligomeric state of mEGFP-tagged-receptor homocomplexes in the membrane of living cells. The protocol is based on Total Internal Reflection Fluorescence (TIRF) microscopy combined with Number and Brightness (N&#38;B) analysis. N&#38;B is a method similar to fluorescence-correlation spectroscopy (FCS) and photon counting histogram (PCH), which are based on the statistical analysis of the fluctuations of the fluorescence intensity of fluorophores diffusing in and out of an illumination volume during an observation time. In particular, N&#38;B is a simplification of PCH to obtain information on the average number of proteins in oligomeric mixtures. The intensity fluctuation amplitudes are described by the molecular brightness of the fluorophore and the average number of fluorophores within the illumination volume. Thus, N&#38;B considers only the first and second moments of the amplitude distribution, namely, the mean intensity and the variance. This is, at the same time, the strength and the weakness of the method. Because only two moments are considered, N&#38;B cannot determine the molar fraction of unknown oligomers in a mixture, but it only estimates the average oligomerization state of the mixture. Nevertheless, it can be applied to relatively small time series (compared to other moment methods) of images of live cells on a pixel-by-pixel basis, simply by monitoring the time fluctuations of the fluorescence intensity. It reduces the effective time-per-pixel to a few microseconds, allowing acquisition in the time range of seconds to milliseconds, which is necessary for fast oligomerization kinetics. Finally, large cell areas as well as sub-cellular compartments can be explored.

We describe an imaging approach for the determination of the average oligomeric state of mEGFP-tagged-receptor oligomers induced by ligand binding in the plasma membrane of living cells. The protocol is based on Total Internal Reflection Fluorescence (TIRF) microscopy combined with Number and Brightness (N&#38;B) analysis.

Toplam İç Yansıma Floresan Mikroskobu Ile Canlı Hücrelerdeki Hücre Yüzey Reseptörlerinin Oligomerizasyon Dinamiği Sayı ve Parlaklık Analizi ile Birlikte

Despite the importance and ubiquity of receptor oligomerization, few methods are applicable for detecting clustering events and measuring the degree of ...