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Amplification, Next-generation Sequencing, and Genomic DNA Mapping of Retroviral Integration Sites

17.5K Views

09:31 min

March 22nd, 2016

DOI :

10.3791/53840-v

March 22nd, 2016


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Amplification

Chapters in this video

0:05

Title

0:39

Generation of Retroviral Stock

2:20

Viral Infection of HEK293T Cells

4:30

Genomic DNA Fragmentation

5:33

Ligation of Linker Oligonucleotide to Fragmented Genomic DNA

6:58

Amplification of Viral LTR-host Genomic DNA Junctions by Semi-nested PCR

8:02

Results: Sequence Logos Depicting HIV-1 Base Preferences from Representative Experiment Libraries

8:52

Conclusion

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