ExCYT: A Graphical User Interface for Streamlining Analysis of High-Dimensional Cytometry Data
11.3K Views
•
05:12 min
•
January 16th, 2019
DOI :
January 16th, 2019
•John-William Sidhom1,2,3, Debebe Theodros1,2,4, Benjamin Murter1,2, Jelani C. Zarif1,2, Sudipto Ganguly1,2, Drew M. Pardoll1,2, Alexander Baras1,2,5
1The Bloomberg~Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine, 2The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, 3Department of Biomedical Engineering, Johns Hopkins University School of Medicine, 4Department of Immunology, Johns Hopkins University School of Medicine, 5Department of Pathology, Johns Hopkins University School of Medicine
Chapters in this video
0:04
Title
0:24
t-SNE Distributed Stochastic Neighbor Embedding (SNE)
1:30
Cluster Analysis, Filtration, and Visualization
3:22
Results: Representative Recapitulation of Myeloid and Lymphoid Sub-Population Data
4:53
Conclusion
Related Videos
10:03
Physiologic Patient Derived 3D Spheroids for Anti-neoplastic Drug Screening to Target Cancer Stem Cells
8.6K Views
07:19
Microfluidic Imaging Flow Cytometry by Asymmetric-detection Time-stretch Optical Microscopy (ATOM)
10.3K Views
06:26
Analysis of Side Population in Solid Tumor Cell Lines
4.3K Views
Kinetx: A Combined Flow Cytometry Assay and Analysis Software Framework to Quantitatively Measure and Categorize Platelet Activation in Real-time.
1.7K Views
06:01
Visualization and Quantification of High-Dimensional Cytometry Data using Cytofast and the Upstream Clustering Methods FlowSOM and Cytosplore
8.4K Views
10:20
Simultaneous Assessment of Kinship, Division Number, and Phenotype via Flow Cytometry for Hematopoietic Stem and Progenitor Cells
1.4K Views
09:57
Workflow for High-content, Individual Cell Quantification of Fluorescent Markers from Universal Microscope Data, Supported by Open Source Software
12.9K Views
14:25
Quantification of Reactive Oxygen Species Using 2′,7′-Dichlorofluorescein Diacetate Probe and Flow-Cytometry in Müller Glial Cells
6.5K Views
06:28
Sample Preparation for Mass Cytometry Analysis
16.0K Views
05:22
Generating and Analyzing High-Parameter Histology Images with Histoflow Cytometry
314 Views
Copyright © 2025 MyJoVE Corporation. All rights reserved