We thank the Kennedy Institute Imaging Facility personnel for technical assistance with imaging. This work was supported by grants from the Kennedy Trust (to A.G.), and Biotechnology and Biological Sciences Research Council (BB/R015651/1 to A.G.).

All experiments involving mice were in agreement with the UK Scientific Procedures Act of 1986.
1. Adoptive Transfer of Antigenic-specific CD8+ T Cells in Mice
<ol>
	<li>Isolate ovalbumin (OVA)-specific CD8+ T cells (OTI) expressing green fluorescent protein (OTI-GFP) or red fluorescent protein (OTI-RFP) from lymph node suspension of T-cell receptor transgenic mice9,10 using a mouse CD8+ T cell isolation kit as per manufacture instructions. Prepare the cell suspension by smashing lymph nodes using a syringe plunger, as previously described11.</li>
	<li>Transfer OTI-GFP or OTI-RFP cells (3 x 106 cells) into C57BL/6 wild type mice recipients by intravenous injection as described by Cahalan, et al.12. Use mice that are typically 6&#8211;12 week of age. 
	NOTE: This step is optional and only required for tracking antigen-specific CD8+ T cells.</li>
</ol>
2. Listeria monocytogenes Infection
<ol>
	<li>Expand L. monocytogenes genetically modified to express OVA (LM-OVA)13 to an exponential phase of growth in broth heart infusion at 37 &#176;C under gentle agitation until the OD600&#160;reaches 0.08&#8211;0.1, as previously described in reference14.</li>
	<li>Inject 100 &#181;L (maximum volume = 200 &#181;L) of 0.1&#8211;0.5 LD50 LM-OVA diluted in phosphate-buffered saline (PBS) by intravenous injection using a 29 G insulin syringe, into C57BL/6 wild type mice recipients bearing OTI-GFP or OTI-RFP cells when indicated. 
	NOTE: In our hands, 0.1 x LD50 LM-OVA corresponds to 2 x 104 colony forming units (CFU). L. monocytogenes genetically modified to express OVA is used to activate the previously transferred OTI CD8+ T cells, but other strains of L. monocytogenes can be used.</li>
</ol>
3. Treatment with Brefeldin A (BFA) to Block Cytokine Secretion
<ol>
	<li>Inject 250 &#181;g of BFA in 200 &#181;L of PBS intraperitoneally 6 h before mouse sacrifice using a 29 G insulin syringe. 
	NOTE: Lyophilized BFA is first resuspended in dimethyl sulfoxide (DMSO) to prepare stock of 25 mg/mL concentration. The BFA is then diluted in PBS at room temperature (RT) to avoid crystallization prior to injection. Inhibition of cytokine secretion induces accumulation of IFN&#947; in cells. This is crucial for cytokine detection.</li>
</ol>
4. Harvesting the Spleen
<ol>
	<li>Euthanize the mice using rising concentration of CO2 followed by cervical dislocation. 
	NOTE: Follow the local institution guidelines for humane euthanasia of mice.</li>
	<li>Cleanse the abdomen with 70% ethanol, make an incision with scissors to make a 1&#8211;2 cm cut through the skin on the left flank of the mouse, where the spleen is located. Carefully make an incision in the peritoneum to expose the spleen and take it out with tweezers. Harvest the spleen, being careful not to squeeze it with forceps or cut it to avoid disrupting the spleen architecture.</li>
</ol>
5. Fixation of the Spleen with Paraformaldehyde (PFA)
<ol>
	<li>Prepare the fixative solution by mixing 3.75 mL of PBS and 3.75 mL of 0.2 M L-lysine. Add 21 mg of sodium m-periodate and mix well. Then add 2.5 mL of 4% PFA and 20 &#181;L of 12 N NaOH. 
	NOTE: Use the fixative solution on the same day and discard the excess. Do not store it. This fixation step is important if the sample contains fluorescent proteins such as GFP. Do not use PFA containing traces of methanol, as it denatures fluorescent proteins. 
	CAUTION: PFA is toxic and must be handled with caution.</li>
	<li>Submerge the spleen in the fixative and fix for a minimum of 4 h, typically 16&#8211;20 h at 4&#176;C under gentle agitation.</li>
	<li>Discard the fixative solution and add 5 mL of PBS for 5 min at RT under gentle agitation.</li>
	<li>Replace the PBS with 5 mL of fresh PBS incubate for 1 h&#160;at 4 &#176;C under gentle agitation.</li>
	<li>Replace the PBS with 5 mL of 30% sucrose, incubate for 12&#8211;24 h. 
	NOTE: This method helps maintain the tissue morphology. After incubation with sucrose solution, the organ should sink at the bottom of the well.</li>
</ol>
6. Freezing and Sectioning
<ol>
	<li>Put dry ice in a large receptacle and place a smaller receptacle inside containing around 50 mL of pure methanol and a few pieces of dry ice.</li>
	<li>Gently dry the spleen on a lint-free wipe.</li>
	<li>Place the spleen inside a base mold containing a drop of optimum cutting temperature (OCT) compound at the bottom. Be careful not to produce any bubbles. Add OCT over the spleen.</li>
	<li>With forceps, deposit the base mold on the surface of the methanol, making sure that it does not touch the OCT. Freezing the tissue as rapidly as possible to minimize artifacts.</li>
	<li>When it is frozen, proceed with sectioning. 
	NOTE: Frozen spleen can be kept at -80 &#176;C for several months.</li>
	<li>Section the tissue using a cryomicrotome.
	<ol>
		<li>Set the chamber temperature on the cryostat should to -21 &#176;C. Cut sections of the desired thickness (usually around 10 &#181;m). This protocol works with thicknesses up to 30 &#181;m.</li>
	</ol>
	</li>
	<li>Collect sections onto glass microscope slides (see the Table of Materials) and inspect visually. 
	NOTE: Sections can be kept at -80 &#176;C for several months.</li>
</ol>
7. Immunofluorescent Staining
<ol>
	<li>Allow the section to come to RT.</li>
	<li>Draw a circle with a liquid blocker (e.g., PAP pen) around the tissue section. Draw outside the OCT or it will not stick.</li>
	<li>Once it has dried, rehydrate the sample by placing PBS on the tissue section for 5 min. 
	NOTE: The volume put on the section depends on the size of the section. We typically use 100&#8211;300 &#181;L. Do not let the sections dry once they are rehydrated.</li>
	<li>Rinse with PBS at least twice to ensure that the section is well adhered to the slide.</li>
	<li>Add blocking solution to the section to decrease non-specific binding of antibodies.
	<ol>
		<li>Prepare blocking solution as follow: PBS with 0.1% Triton X100, 2% fetal calf serum (FCS), 2.5 &#181;g/mL Fc receptor blocker (anti-mouse CD16/32). Then add 2&#8211;5% normal serum of the species of each secondary antibody of the staining panel. 
		NOTE: If the antibodies are directly conjugated/biotinylated, add 5% normal serum of the species of each primary antibody. If a primary antibody and one of the secondary antibodies are from the same species (e.g., primary antibody raised in rabbit and secondary rabbit anti-rat), do not use the normal serum species as it will increase the background signal.</li>
		<li>Gently remove the PBS from the section by aspiration and add 100 &#181;L of the blocking solution per sample section. Incubate in a covered wet chamber for a minimum of 1 h at RT.</li>
	</ol>
	</li>
	<li>Stain with primary antibodies.
	<ol>
		<li>Dilute the primary antibodies at the optimal concentration in the blocking solution. The general starting point antibody concentration is 5 &#181;g/mL, but it should be optimized for each antibody and tissue. 
		NOTE: If the antibodies are directly conjugated, centrifuge the antibody mix at 17.135 x g (13.500 rpm) for 15 min at 4 &#176;C before using it. Fluorophores can precipitate. This step will pellet the precipitates and thereby prevent non-specific deposition of the precipitated antibodies on the slide.</li>
		<li>Replace the blocking solution with the primary antibody mix for each sample.</li>
		<li>Incubate for 4 h at RT or overnight (OVN) at 4 &#176;C in a covered wet chamber.</li>
	</ol>
	</li>
	<li>Perform washing.
	<ol>
		<li>Prepare Wash Buffer by adding 2% FCS to PBS.</li>
		<li>Wash 4 times with wash buffer: one quick (without incubation), one for 10 min and two for 5 min. Then perform a final wash with PBS for 5 min.</li>
	</ol>
	</li>
	<li>Staining with secondary antibodies.
	<ol>
		<li>Dilute the secondary antibodies of interest at the optimal concentration in the blocking solution. Centrifuge the mix, as described for the primary antibodies.</li>
		<li>Remove the final wash solution. Add the secondary antibody mix on top of the section and incubate for 1&#8211;4 h at RT in a covered wet chamber.</li>
	</ol>
	</li>
	<li>Wash 4 times with wash buffer: one quick (without incubation), one for 10 min and two for 5 min. Then&#160;perform a final wash with PBS for 5 min.</li>
	<li>Remove the final wash solution. Allow the PBS to evaporate but do not over-dry the section. Place a drop of the mounting medium on top of the sample and carefully place the cover glass on top of it. The mounting medium must recover the whole section. Let it polymerase OVN at RT protected from light. 
	NOTE: Draw a circle around the section on the reverse side of the slide before applying the mounting medium. Once the mounting medium is applied, the tissue might become difficult to see.</li>
	<li>Store the slides in the dark at 4 &#176;C until ready to image.</li>
</ol>
8. Imaging and Analysis
<ol>
	<li>Perform imaging of the staining with a confocal microscope. 
	NOTE: In this protocol, an inverted spectral laser scanning microscope was used (see the Table of Materials), together with the objectives 10x/NA 0.40 or 60x/NA 1.4 (for analysis of cytokine sub-cellular localization). Wavelengths of excitation and emission are displayed for each fluorophore and fluorescent protein in the Table of Materials.</li>
	<li>Perform analysis and quantification as required using image processing software (e.g., Imaris or Fiji).</li>
</ol>

<ol>
	<li>Iwasaki, A., Medzhitov, R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Control+of+adaptive+immunity+by+the+innate+immune+system.">Control of adaptive immunity by the innate immune system.</a> Nature Immunology. 16 (4), 343-353 (2015).</li><li>Harty, J. T., Bevan, M. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Specific+immunity+to+Listeria+monocytogenes+in+the+absence+of+IFN+gamma.">Specific immunity to Listeria monocytogenes in the absence of IFN gamma.</a> Immunity. 3 (1), 109-117 (1995).</li><li>Kubota, K., Kadoya, Y. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Innate+IFN-gamma-producing+cells+in+the+spleen+of+mice+early+after+Listeria+monocytogenes+infection:+importance+of+microenvironment+of+the+cells+involved+in+the+production+of+innate+IFN-gamma.">Innate IFN-gamma-producing cells in the spleen of mice early after Listeria monocytogenes infection: importance of microenvironment of the cells involved in the production of innate IFN-gamma.</a> Frontiers in Immunology. 2 (26), (2011).</li><li>Dunn, P. L., North, R. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Early+gamma+interferon+production+by+natural+killer+cells+is+important+in+defense+against+murine+listeriosis.">Early gamma interferon production by natural killer cells is important in defense against murine listeriosis.</a> Infection and Immunity. 59 (9), 2892-2900 (1991).</li><li>Krummel, M. F., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Paracrine+costimulation+of+IFN-gamma+signaling+by+integrins+modulates+CD8++T+cell+differentiation.">Paracrine costimulation of IFN-gamma signaling by integrins modulates CD8+ T cell differentiation.</a> Proceedings of the National Academy of Sciences of the United States of America. 115 (45), 11585-11590 (2018).</li><li>Curtsinger, J. M., Agarwal, P., Lins, D. C., Mescher, M. F. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Autocrine+IFN-gamma+promotes+naive+CD8++T+cell+differentiation+and+synergizes+with+IFN-alpha+to+stimulate+strong+function.">Autocrine IFN-gamma promotes naive CD8+ T cell differentiation and synergizes with IFN-alpha to stimulate strong function.</a> Journal of Immunology. 189 (2), 659-668 (2012).</li><li>Hosking, M. P., Flynn, C. T., Whitton, J. L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Antigen-specific+naive+CD8+++T+cells+produce+a+single+pulse+of+IFN-gamma+in+vivo+within+hours+of+infection,+but+without+antiviral+effect.">Antigen-specific naive CD8++ T cells produce a single pulse of IFN-gamma in vivo within hours of infection, but without antiviral effect.</a> Journal of Immunology. 193 (4), 1873-1885 (2014).</li><li>Croxford, A. L., Buch, T. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Cytokine+reporter+mice+in+immunological+research:+perspectives+and+lessons+learned.">Cytokine reporter mice in immunological research: perspectives and lessons learned.</a> Immunology. 132 (1), 1-8 (2011).</li><li>Gerard, A., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Secondary+T+cell-T+cell+synaptic+interactions+drive+the+differentiation+of+protective+CD8+++T+cells.">Secondary T cell-T cell synaptic interactions drive the differentiation of protective CD8++ T cells.</a> Nature Immunology. 14 (4), 356-363 (2013).</li><li>Engelhardt, J. J., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Marginating+dendritic+cells+of+the+tumor+microenvironment+cross-present+tumor+antigens+and+stably+engage+tumor-specific+T+cells.">Marginating dendritic cells of the tumor microenvironment cross-present tumor antigens and stably engage tumor-specific T cells.</a> Cancer Cell. 21 (3), 402-417 (2012).</li><li>Matheu, M. P., Cahalan, M. D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Isolation+of+CD4++T+cells+from+mouse+lymph+nodes+using+Miltenyi+MACS+purification.">Isolation of CD4+ T cells from mouse lymph nodes using Miltenyi MACS purification.</a> Journal of Visualized Experiments. (9), 409 (2007).</li><li>Matheu, M. P., Parker, I., Cahalan, M. D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Dissection+and+2-photon+imaging+of+peripheral+lymph+nodes+in+mice.">Dissection and 2-photon imaging of peripheral lymph nodes in mice.</a> Journal of Visualized Experiments. (7), 265 (2007).</li><li>Pope, C., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Organ-specific+regulation+of+the+CD8++T+cell+response+to+Listeria+monocytogenes+infection.">Organ-specific regulation of the CD8+ T cell response to Listeria monocytogenes infection.</a> Journal of Immunology. 166 (5), 3402-3409 (2001).</li><li>Jones, G. S., D'Orazio, S. E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Listeria+monocytogenes:+cultivation+and+laboratory+maintenance.">Listeria monocytogenes: cultivation and laboratory maintenance.</a> Current Protocols in Microbiology. 31, 1-7 (2013).</li><li>Kang, S. J., Liang, H. E., Reizis, B., Locksley, R. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Regulation+of+hierarchical+clustering+and+activation+of+innate+immune+cells+by+dendritic+cells.">Regulation of hierarchical clustering and activation of innate immune cells by dendritic cells.</a> Immunity. 29 (5), 819-833 (2008).</li><li>Chang, S. R., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Characterization+of+early+gamma+interferon+(IFN-gamma)+expression+during+murine+listeriosis:+identification+of+NK1.1++CD11c++cells+as+the+primary+IFN-gamma-expressing+cells.">Characterization of early gamma interferon (IFN-gamma) expression during murine listeriosis: identification of NK1.1+ CD11c+ cells as the primary IFN-gamma-expressing cells.</a> Infection and Immunity. 75 (3), 1167-1176 (2007).</li><li>Mollenhauer, H. H., Morre, D. J., Rowe, L. D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Alteration+of+intracellular+traffic+by+monensin;+mechanism,+specificity+and+relationship+to+toxicity.">Alteration of intracellular traffic by monensin; mechanism, specificity and relationship to toxicity.</a> Biochimica et Biophysica Acta. 1031 (2), 225-246 (1990).</li><li>Helms, J. B., Rothman, J. E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Inhibition+by+brefeldin+A+of+a+Golgi+membrane+enzyme+that+catalyses+exchange+of+guanine+nucleotide+bound+to+ARF.">Inhibition by brefeldin A of a Golgi membrane enzyme that catalyses exchange of guanine nucleotide bound to ARF.</a> Nature. 360 (6402), 352-354 (1992).</li><li>Schuerwegh, A. J., Stevens, W. J., Bridts, C. H., De Clerck, L. S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Evaluation+of+monensin+and+brefeldin+A+for+flow+cytometric+determination+of+interleukin-1+beta,+interleukin-6,+and+tumor+necrosis+factor-alpha+in+monocytes.">Evaluation of monensin and brefeldin A for flow cytometric determination of interleukin-1 beta, interleukin-6, and tumor necrosis factor-alpha in monocytes.</a> Cytometry. 46 (3), 172-176 (2001).</li><li>Nylander, S., Kalies, I. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Brefeldin+A,+but+not+monensin,+completely+blocks+CD69+expression+on+mouse+lymphocytes:+efficacy+of+inhibitors+of+protein+secretion+in+protocols+for+intracellular+cytokine+staining+by+flow+cytometry.">Brefeldin A, but not monensin, completely blocks CD69 expression on mouse lymphocytes: efficacy of inhibitors of protein secretion in protocols for intracellular cytokine staining by flow cytometry.</a> Journal of Immunology Methods. 224 (1-2), 69-76 (1999).</li></ol>

The authors have nothing to disclose.

In this manuscript, we present a method to visualize IFN&#947; production in the spleen following L. monocytogenes infection in mice. This protocol is simple and can be adapted to other tissues and cytokine triggers, but the following aspects have to be considered. Cells often rapidly secrete the cytokines they produce, and cytokines are rapidly picked up by neighboring cells. It is as such difficult to detect cytokines in situ. A common method to rapidly re-initiate cytokine production is to re-stimulate the cells ex vivo followed by cytokine detection in the media by enzyme-linked immunosorbent assay. In this context, any information about the spatial localization of the cytokine-producing cells is lost. In addition, cytokine production following re-stimulation does not necessarily reflect whether cytokines are actually produced and secreted in vivo, but rather indicates the capacity of a given cell population to produce cytokines. Therefore, both methods will provide different information and one should consider which information is most valuable for their experiment.
In order to detect intracellular cytokines, our method uses an intracellular protein transport inhibitor to trap cytokines inside cells and increase signal detection. However, it is important to note that these inhibitors affect the normal transportation of proteins from the endothelial reticulum (RE) to the Golgi apparatus and to the secretory vesicle impairing their release, which could cause toxicity. As a consequence, BFA, or other inhibitor, should be used for a short period of time, typically no more than a few hours. Hence, it is important to find the right balance between the inhibitor dose and time of treatment in order to optimize the level of cytokines trapped inside the cell without causing serious cytotoxic effects. These variables can differ between cytokines and the route of administration for the BFA. In our infection model, the BFA was administrated intraperitoneally in order to provide a rapid systemic dispersion, but it can also be delivered intravenously.
The most commonly used intracellular protein transport inhibitors are BFA, used here, and monensin (MN). These inhibitors are often used indistinctly to accumulate and study cytokine production but they have slight differences in their mechanisms of action. MN inhibits transportation of proteins within the Golgi apparatus hence accumulating proteins in the Golgi17 while BFA prevents coatomer protein complex-I recruitment, inhibiting the retrograde movement of proteins to the endoplasmic reticulum (ER) and thereby promoting accumulation of cytokines in the ER18. As such, choosing the best intracellular protein transport inhibitor will depend on different factors, such as the cytokine to be detected. For example, it has been shown in lipopolysaccharide-induced intracellular staining of monocytes that BFA is more efficient to measure the cytokines IL-1&#946;, IL-6 and TNF than MN19.
This protocol involves the visualization of the cytokine in situ by confocal microscopy and therefore there are only a limited number of markers than can be used to study the cytokine- producing cells and their microenvironment. It is also necessary to consider that protein transport inhibitors such as BFA or MN disturb the normal expression of several proteins and hence their use when studying the simultaneous expression of certain activation cell surface markers has to be approached carefully. For example, BFA but not MN blocks the expression of CD69 in murine lymphocytes20. Despite this limitation, confocal imaging enables sub-cellular localization of cytokines, as well as the direction of the cytokine secretion within the cell. The data generated using this protocol suggest that NK cells tend to secrete IFN-y in a diffuse pattern while CD8+ T cells seem to direct the IFN&#947; secretion towards other CD8+ T cells that are in direct interaction with them5.
To conclude, this protocol is suitable to visualize a variety of cytokines in situ and identify producing cells and their microenvironment following many triggers such as infection or autoimmunity. The information obtained is instrumental to understand the importance of the in vivo spatial orchestration of different cell types and the cytokine they produce, necessary for an efficient immune response.

Orchestrating an efficient immune response against a pathogen requires complex integration of signals displayed by a variety of immune cells that are often dispersed among the organism. In order to communicate, these cells produce small soluble proteins with multiple biological functions that act as immunomodulators named cytokines. Cytokines control cell recruitment, activation and proliferation and hence are known to be key players in the promotion of immune responses1. Effective immune responses require cytokines to be released in a very organized spatiotemporal pattern connecting specific cells to induce specific signals. Therefore, it is crucial to study cytokine production and its signaling in situ, taking into account the microenvironment in which cytokines are produced.
Listeria monocytogenes (L. monocytogenes) is a Gram-positive intracellular bacterium used as a prime model to study immune responses to intracellular pathogens in mice. One cytokine, IFN gamma (IFN&#947;) is produced rapidly, within 24 h following L. monocytogenes infection. It is necessary for pathogen clearance, as mice knocked out for IFN&#947; are highly susceptible to L. monocytogenes infection2. IFN&#947; is pleiotropic and produced by multiple cells following infection3. While IFN&#947; produced by natural killer (NK) cells is required for direct anti-bacterial activity4, IFN&#947; from other sources have been shown to have other functions. Indeed, we and others recently found that IFN&#947; produced by CD8+ T cells has a specific function in directly regulating T cell differentiation5,6,7. As such, understanding which cells produce IFN&#947; (and in which microenvironment) is crucial to dissect its function.
The most common technique to study cytokine production relies on intracellular cytokine staining analyzed by flow cytometry. This method allows the simultaneous detection of multiple cytokines combined with cell surface markers within a single sample, providing an extremely useful tool to study cytokine production. However, using the aforementioned technique implies losing any spatial information. In addition, cytokine detection often relies on in vitro re-stimulation to enable cytokine detection. As such, the capacity of a given cell to produce a cytokine is analyzed, and it does not necessarily correlate with actual cytokine secretion in situ. Other methods use reporter mice for which fluorescent protein expression correlates with cytokine transcription and allows for visualization on a single-cell level8. Although this method can track cytokine transcription in situ, there are a limited number of cytokine-reporter mice available. In addition, transcription, translation and secretion can sometimes be unlinked, and fluorescent proteins have a different half-life than the cytokine they report, making this method sometimes not adequate for in situ cytokine visualization.
Here, we describe a method to visualize in situ cytokine production by confocal microscopy at single cell resolution. This technique enables the visualization of the cellular source and surrounding niche within the tissue. This protocol specifically describes the visualization of IFN&#947; production in the spleen of L. monocytogenes infected mice, focusing here on IFN&#947; production by NK cells and antigen specific CD8+ T cells. However, it can be extended and adapted to the characterization of any cytokine production in the context of other situations where cytokines are produced such as infection, inflammation or autoimmune diseases, as long the targeted cytokine can be retained in cells by intracellular protein transport inhibitor.

<table><tbody><tr><td>Brefeldin A</td><td>Cambridge bioscience</td><td>CAY11861</td><td></td></tr><tr><td>Paraformaldehyde</td><td>Agar scientific</td><td>R1018</td><td></td></tr><tr><td>L-Lysin dihydrochloride</td><td>Sigma lifescience</td><td>L5751</td><td></td></tr><tr><td>Sodium meta-periodate</td><td>Thermo Scientific</td><td>20504</td><td></td></tr><tr><td>D(+)-saccharose</td><td>VWR Chemicals</td><td>27480.294</td><td></td></tr><tr><td>Precision wipes paper Kimtech science</td><td>Kimberly-Clark Professional</td><td>75512</td><td></td></tr><tr><td>O.C.T. compound, mounting medium for cryotomy</td><td>VWR Chemicals</td><td>361603E</td><td></td></tr><tr><td>Fc block, purified anti-mouse CD16/32, clone 93</td><td>Biolegend</td><td>101302</td><td>&lt;strong&gt;Antibody clone and Concentration used:&lt;/strong&gt; 2.5 mg/ml</td></tr><tr><td>Microscope slides - Superfrost Plus</td><td>VWR Chemicals</td><td>631-0108</td><td></td></tr><tr><td>anti-CD169 - AF647</td><td>Biolegend</td><td>142407</td><td>&lt;strong&gt;Antibody clone and Concentration used:&lt;/strong&gt; clone 3D6.112 1.6 mg/ml&lt;br/&gt; &lt;strong&gt;Excitation wavelength: &lt;/strong&gt;650&lt;br/&gt; &lt;strong&gt;Emission wavelength: &lt;/strong&gt;65</td></tr><tr><td>anti-F4/80 - APC</td><td>Biolegend</td><td>123115</td><td>&lt;strong&gt;Antibody clone and Concentration used:&lt;/strong&gt; clone BM8 2.5 mg/ml&lt;br/&gt; &lt;strong&gt;Excitation wavelength: &lt;/strong&gt;650&lt;br/&gt; &lt;strong&gt;Emission wavelength: &lt;/strong&gt;660</td></tr><tr><td>anti-B220 - PB</td><td>Biolegend</td><td>103230</td><td>&lt;strong&gt;Antibody clone and Concentration used:&lt;/strong&gt; clone RA3-6B2 1.6 mg/mL&lt;br/&gt; &lt;strong&gt;Excitation wavelength: &lt;/strong&gt;410&lt;br/&gt; &lt;strong&gt;Emission wavelength: &lt;/strong&gt;455</td></tr><tr><td>anti-IFNg - biotin</td><td>Biolegend</td><td>505804</td><td>&lt;strong&gt;Antibody clone and Concentration used:&lt;/strong&gt; clone XMG1.2 5 mg/mL</td></tr><tr><td>anti-IFNg - BV421</td><td>Biolegend</td><td>505829</td><td>&lt;strong&gt;Antibody clone and Concentration used:&lt;/strong&gt; clone XMG1.2 5 mg/mL&lt;br/&gt; &lt;strong&gt;Excitation wavelength: &lt;/strong&gt;405&lt;br/&gt; &lt;strong&gt;Emission wavelength: &lt;/strong&gt;436</td></tr><tr><td>anti-Nkp46/NCRI</td><td>R&amp;amp;D Systems</td><td>AF2225</td><td>&lt;strong&gt;Antibody clone and Concentration used:&lt;/strong&gt; goat 2.5 mg/mL</td></tr><tr><td>anti-goat IgG-FITC</td><td>Novusbio</td><td>NPp 1-74814</td><td>&lt;strong&gt;Antibody clone and Concentration used:&lt;/strong&gt; 1 mg/mL&lt;br/&gt; &lt;strong&gt;Excitation wavelength: &lt;/strong&gt;490&lt;br/&gt; &lt;strong&gt;Emission wavelength: &lt;/strong&gt;525</td></tr><tr><td>Streptavidin - PE</td><td>Biolegend</td><td>405203</td><td>&lt;strong&gt;Antibody clone and Concentration used:&lt;/strong&gt; 2.5 mg/mL&lt;br/&gt; &lt;strong&gt;Excitation wavelength: &lt;/strong&gt;565&lt;br/&gt; &lt;strong&gt;Emission wavelength: &lt;/strong&gt;578</td></tr><tr><td>Streptavidin - FITC</td><td>Biolegend</td><td>405201</td><td>&lt;strong&gt;Antibody clone and Concentration used:&lt;/strong&gt; 2.5 mg/mlL&lt;br/&gt; &lt;strong&gt;Excitation wavelength: &lt;/strong&gt;490&lt;br/&gt; &lt;strong&gt;Emission wavelength: &lt;/strong&gt;525</td></tr><tr><td>Fluoromount G</td><td>SouthernBiotech</td><td>0100-01</td><td></td></tr><tr><td>Cover glasses 22 mm x 40 mm</td><td>Menzel-Glazer</td><td>12352128</td><td></td></tr><tr><td>Liquid blocker super PAP PEN mini</td><td>Axxora</td><td>CAC-DAI-PAP-S-M</td><td></td></tr><tr><td>Imaris - Microscopy Image Analysis Software</td><td>Bitplane</td><td></td><td></td></tr><tr><td>Confocal microscope - Olympus FV1200 Laser scanning microscope</td><td>Olympus</td><td></td><td></td></tr><tr><td>Cryostat - CM 1900 UV</td><td>Leica</td><td></td><td></td></tr><tr><td>Base mould disposable</td><td>Fisher Scientific UK Ltd</td><td>11670990</td><td></td></tr><tr><td>PBS 1x</td><td>Life Technologies Ltd</td><td>20012068</td><td></td></tr><tr><td>BHI Broth</td><td>VWR Brand</td><td>303415ZA</td><td></td></tr><tr><td>GFP</td><td></td><td></td><td>&lt;br/&gt; &lt;strong&gt;Excitation wavelength: &lt;/strong&gt;484&lt;br/&gt; &lt;strong&gt;Emission wavelength: &lt;/strong&gt;507</td></tr><tr><td>RFP</td><td></td><td></td><td>&lt;br/&gt; &lt;strong&gt;Excitation wavelength: &lt;/strong&gt;558&lt;br/&gt; &lt;strong&gt;Emission wavelength: &lt;/strong&gt;583</td></tr><tr><td>Insulin syringe, with needle, 29 G</td><td>VWR International</td><td>BDAM324824</td><td></td></tr><tr><td>C57BL/6 wild type mice</td><td>Charles River</td><td></td><td></td></tr></tbody></table>

imaging of in situ interferon gamma production in the mouse spleen following listeria monocytogenes infection

Cytokines are small proteins secreted by cells, mediating cell-cell communications that are crucial for effective immune responses. One characteristic of cytokines is their pleiotropism, as they are produced by and can affect a multitude of cell types. As such, it is important to understand not only which cells are producing cytokines, but also in which environment they do so, in order to define more specific therapeutics. Here, we describe a method to visualize cytokine production in situ following bacterial infection. This technique relies on imaging cytokine-producing cells in their native environment by confocal microscopy. To do so, tissue sections are stained for markers of multiple cell types together with a cytokine stain. Key to this method, cytokine secretion is blocked directly in vivo before harvesting the tissue of interest, allowing for detection of the cytokine that accumulated inside the producing cells. The advantages of this method are multiple. First, the microenvironment in which cytokines are produced is preserved, which could ultimately inform on the signals required for cytokine production and the cells affected by those cytokines. In addition, this method gives an indication of the location of the cytokine production in vivo, as it does not rely on artificial in vitro re-stimulation of the producing cells. However, it is not possible to simultaneously analyze cytokine downstream signaling in cells that receive the cytokine. Similarly, the cytokine signals observed correspond&#160;only to the time-window during which cytokine secretion was blocked. While we describe the visualization of the cytokine Interferon (IFN) gamma in the spleen following mouse infection by the intracellular bacteria Listeria monocytogenes, this method could potentially be adapted to the visualization of any cytokine in most organs.

IFN&#947; produced within the first 24 h after Listeria monocytogenes infection is critical to control the spread of this pathogen. Using this protocol, we can visualize not only which cells are producing IFN&#947; but also whether they are located in a specific microenvironment. To help us delineate the architecture of the spleen, we labeled cells known to have particular location within the spleen. The marker F4/80 labels all macrophages and highlights the red pulp. The marker B220 labels B cells and highlights B cell follicles surrounding the T cell zone. The marker CD169 labels marginal zone macrophages, surrounding the white pulp (Figure 1). Most OTI cells, whether they express IFN&#947; or not, are present in the white pulp and as such, all images are those of the white pulp, unless indicated.
One critical step in this protocol is the use of BFA to inhibit cytokine secretion. Indeed, the detection of IFN&#947; by NK cells was greatly impaired when mice were not treated with BFA (Figure 2). Using our protocol, we could find that at least two cell types produce IFN&#947; 24 h after infection&#8212;NK cells and antigen-specific CD8+ T cells (Figure 3)&#8212;similarly to what has been found previously by flow cytometry3.
In situ imaging of IFN&#947; producing cells revealed that IFN&#947; production is not spread throughout the spleen, but concentrated into discreet areas (Figure 4). Indeed, we found that T cells were activated throughout the spleen (highlighted by T cell clustering), and this did not necessarily correlate with IFN&#947; production. One likely explanation is that IFN&#947; production is restricted to the location of the infected cells15,16, and T cell activation&#8212;represented by clustering&#8212;can be supported by both infected (IFN&#947; positive) and non-infected (IFN&#947; negative) antigen-presenting cells. Other stains will be required to pinpoint the exact location and get an indication of the mechanism restricting IFN&#947; production to this area and its relationship to antigen transfer. Interestingly, we found that activated, clustered, antigen-specific T cells are located throughout the white pulp of the spleen but they produce IFN&#947; only in regions where NK cells are coexisting with them (Figure 5). As such, the presence of NK cells delineates a specific microenvironment in the white pulp, in which clustered T cells produce IFN&#947; as opposed to clustered T cells in the other part of the white pulp. This suggests that T cell activation is not sufficient to dictate IFN&#947; production at this time point.
Another interesting feature highlighted by our protocol is the different sub-cellular localization of IFN&#947; in NK versus CD8+ T cells5. As shown in Figure 6, while IFN&#947; localization in NK cells is diffused in the cytosol, CD8+ T cells often recruit IFN&#947; towards another T cell.
<img alt="Figure 1" class="xfigimg" src="/files/ftp_upload/59819/59819fig01.jpg" /> 
Figure 1: Markers highlighting the spleen architecture.&#160;Mice were infected with 2 x 104 CFU LM-OVA and euthanized 24 h post infection. Spleen was explanted and processed as described in the protocol. (A) Sections were stained for NK cells (anti-NCR1 followed by anti-goat IgG-FITC; green), OTI-RFP cells (red) and macrophages (anti-F4/80-APC; magenta). RP = Red Pulp; WP = White Pulp. Scale bar = 200 &#181;m. (B) Sections were stained for B cells (anti-B220-Pacific Blue; Blue), OTI-GFP cells (GFP signal shown in red) and marginal zone macrophages (anti-CD169-Alexa647; magenta). RP = Red Pulp; BF = B cell follicle; TZ = T cell zone. Scale bar = 50 &#181;m. This is a representative image of 3 independent experiments (N = 4). <a href="https://www.jove.com/files/ftp_upload/59819/59819fig01large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 2" class="xfigimg" src="/files/ftp_upload/59819/59819fig02.jpg" /> 
Figure 2: BFA treatment allows for the detection of intracellular IFN&#947; in situ.&#160;N&#947; production is restricted to specific areas in the sple Mice were infected with 2 x 104 CFU LM-OVA and treated with BFA (A) or left untreated (B) after 18 h. Mice were euthanized 24 h post infection. Spleen was explanted and processed as described in the protocol. Sections were stained for NK cells (anti-NCR1 followed by anti-goat IgG-FITC; green), OTI-RFP cells (red) and IFN&#947; (anti-IFN&#947;-BV421; cyan). Scale bar = 5 &#181;m. This is a representative image of NK cell-rich areas from 3 independent experiments (N = 3). <a href="https://www.jove.com/files/ftp_upload/59819/59819fig02large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 3" class="xfigimg" src="/files/ftp_upload/59819/59819fig03.jpg" /> 
Figure 3: IFN&#947; producing cells in the spleen.&#160;Mice were infected with 2 x 104 CFU LM-OVA when indicated and treated with BFA after 18 h. Mice were euthanized 24 h post infection. Spleen was explanted and processed as described in the protocol. Sections were stained for NK cells (anti-NCR1 followed by anti-goat IgG-FITC; green), OTI-RFP cells (red) and IFN&#947; (anti-IFN&#947;-BV421; cyan). (A) Representative image of a spleen from an un-infected na&#239;ve mouse to demonstrate absence of IFN&#947; non-specific staining. White lines delineate the white pulp. WP = White pulp; RP = Red pulp. (B) Representative image of the white pulp from the spleen of a mouse infected by LM-OVA, showing invasion of NK cells to the white pulp and production of IFN&#947; by NK cells, OTI cells and non-labelled cells. Images are representative from 4 independent experiments (N = 4). Scale bars = 70 &#181;m (A); and 20 &#181;m (B). <a href="https://www.jove.com/files/ftp_upload/59819/59819fig03large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 4" class="xfigimg" src="/files/ftp_upload/59819/59819fig04.jpg" /> 
Figure 4: IFN&#947; production is restricted to specific areas in the spleen following LM-OVA infection.&#160;Mice were infected with 2 x 104 CFU LM-OVA and treated with BFA after 18 h. Mice were euthanized 24 h post infection. Spleen was explanted and processed as described in the protocol. All sections were stained for B cells (B220-Pacific Blue Ab, Blue) and IFN&#947; (anti-IFN&#947;-biotin followed by streptavidin-PE; cyan). OTI-GFP cells (GFP signal shown in red). Cyan lines correspond to areas of high IFN&#947; production. Those are representative images of 4 independent experiments (N = 4). (A) Sections were stained for marginal zone macrophages (anti-CD169-Alexa 647, magenta). Scale bar = 50 &#181;m. (B) Sections were stained for all macrophages (F4/80). Scale bar = 100 &#181;m. <a href="https://www.jove.com/files/ftp_upload/59819/59819fig04large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 5" class="xfigimg" src="/files/ftp_upload/59819/59819fig05.jpg" /> 
Figure 5: IFN&#947; production by activated OTI cells occurs in a specific microenvironment.&#160;Mice were infected with 2 x 104 CFU LM-OVA and treated with BFA after 18 h. Mice were euthanized 24 h post infection. Spleens were explanted and processed as described in the protocol. Sections were stained for NK cells (anti-NCR1 followed by anti-goat IgG-FITC; green), OTI-RFP cells (red) and IFN&#947; (anti-IFN&#947;-BV421; cyan). Green and red lines highlight NK and OTI cell zones, respectively. White arrow indicate examples of T cell clusters not producing IFN&#947;. Green arrows examples of T cell clusters producing IFN&#947;. Scale bar = 100 &#181;m. This is a representative image of four independent experiments (N = 4). <a href="https://www.jove.com/files/ftp_upload/59819/59819fig05large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 6" class="xfigimg" src="/files/ftp_upload/59819/59819fig06.jpg" /> 
Figure 6: Sub-cellular localization of IFN&#947; in NK cells and T cells.&#160;Mice were infected with 2 x 104 CFU LM-OVA and treated with BFA after 18 h. Mice were euthanized 24 h post infection. Spleen was explanted and processed as described in the protocol. All sections were stained for IFN&#947; (anti-IFN&#947;-BV421; cyan). White lines delineate cell edges and white arrows shows directionality of secretion. This is a representative image of two independent experiments (N = 5). (A)- OTI-RFP cells are shown in red. Scale bar =&#160;5 &#181;m. (B) Sections were stained for NK cells (anti-NCR1 followed by anti-goat IgG-FITC; green. Scale bar =&#160;2 &#181;m. <a href="https://www.jove.com/files/ftp_upload/59819/59819fig06large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>

Watch this Scientific Journal Video about Imaging of In Situ Interferon Gamma Production in the Mouse Spleen following Listeria monocytogenes Infection at JoVE.com

Imaging of In Situ Interferon Gamma Production in the Mouse Spleen following Listeria monocytogenes Infection

Here, we describe a simple confocal imaging method to visualize the in situ localization of cells secreting the cytokine Interferon gamma in murine secondary lymphoid organs. This protocol can be extended for the visualization of other cytokines in diverse tissues.

Imaging of In Situ Interferon Gamma Production in the Mouse Spleen following Listeria monocytogenes Infection

Cytokines are small proteins secreted by cells, mediating cell-cell communications that are crucial for effective immune responses. One characteristic of ...

imaging-situ-interferon-gamma-production-mouse-spleen-following

Research

JoVE Journal

Immunology and Infection

9.0K Views.  The University of Oxford. Here, we describe a simple confocal imaging method to visualize the in situ localization of cells secreting the cytokine Interferon gamma in murine secondary lymphoid organs. This protocol can be extended for the visualization of other cytokines in diverse tissues.

Video: Imaging of In Situ Interferon Gamma Production in the Mouse Spleen following Listeria monocytogenes Infection

Measuring Bacterial Load and Immune Responses in Mice Infected with Listeria monocytogenes

Listeria monocytogenes (Listeria) is a Gram-positive facultative intracellular pathogen1. Mouse studies typically employ intravenous injection of Listeria, which results in systemic infection2. After injection, Listeria quickly disseminates to the spleen and liver due to uptake by CD8&alpha;+ dendritic cells and Kupffer cells3,4. Once phagocytosed, various bacterial proteins enable Listeria to escape the phagosome, survive within the cytosol, and infect neighboring cells5. During the first three days of infection, different innate immune cells (e.g. monocytes, neutrophils, NK cells, dendritic cells) mediate bactericidal mechanisms that minimize Listeria proliferation. CD8+ T cells are subsequently recruited and responsible for the eventual clearance of Listeria from the host, typically within 10 days of infection6.
Successful clearance of Listeria from infected mice depends on the appropriate onset of host immune responses6	. There is a broad range of sensitivities amongst inbred mouse strains7,8. Generally, mice with increased susceptibility to Listeria infection are less able to control bacterial proliferation, demonstrating increased bacterial load and/or delayed clearance compared to resistant mice. Genetic studies, including linkage analyses and knockout mouse strains, have identified various genes for which sequence variation affects host responses to Listeria infection6,8-14. Determination and comparison of infection kinetics between different mouse strains is therefore an important method for identifying host genetic factors that contribute to immune responses against Listeria. Comparison of host responses to different Listeria strains is also an effective way to identify bacterial virulence factors that may serve as potential targets for antibiotic therapy or vaccine design.
We describe here a straightforward method for measuring bacterial load (colony forming units [CFU] per tissue) and preparing single-cell suspensions of the liver and spleen for FACS analysis of immune responses in Listeria-infected mice. This method is particularly useful for initial characterization of Listeria infection in novel mouse strains, as well as comparison of immune responses between different mouse strains infected with Listeria. We use the Listeria monocytogenes EGD strain15 that, when cultured on blood agar, exhibits a characteristic halo zone around each colony due to &beta;-hemolysis1 (Figure 1). Bacterial load and immune responses can be determined at any time-point after infection by culturing tissue homogenate on blood agar plates and preparing tissue cell suspensions for FACS analysis using the protocols described below. We would note that individuals who are immunocompromised or pregnant should not handle Listeria, and the relevant institutional biosafety committee and animal facility management should be consulted before work commences.

Measuring Bacterial Load and Immune Responses in Mice Infected with Listeria monocytogenes

Listeria monocytogenes is a model organism for studying immune responses and genetic susceptibility to intracellular bacteria in mice. This method enables one to measure bacterial load and generate single-cell suspensions of the liver and spleen from mice for FACS analysis to determine changes in immune cells due to Listeria infection.

Listeria monocytogenes (Listeria) is a Gram-positive facultative intracellular pathogen1. Mouse studies typically employ intravenous injection of ...

Generation of Orthotopic Pancreatic Tumors and Ex vivo Characterization of Tumor-Infiltrating T Cell Cytotoxicity

In vivo models of pancreatic cancer provide invaluable tools for studying disease dynamics, immune infiltration and new therapeutic strategies. The orthotopic murine model can be performed on large cohorts of immunocompetent mice simultaneously, is relatively inexpensive and preserves the cognate tissue microenvironment. The quantification of T cell infiltration and cytotoxic activity within orthotopic tumors provides a useful indicator of an antitumoral response.
This protocol describes the methodology for surgical generation of orthotopic pancreatic tumors by injection of a low number of syngeneic tumor cells resuspended in 5 &#181;L basement membrane directly into the pancreas. Mice bearing orthotopic tumors take approximately 30 days to reach endpoint, at which point tumors can be harvested and processed for characterization of tumor-infiltrating T cell activity. Rapid enzymatic digestion using collagenase and DNase allows a single-cell suspension to be extracted from tumors. The viability and cell surface markers of immune cells extracted from the tumor are preserved; therefore, it is appropriate for multiple downstream applications, including flow-assisted cell sorting of immune cells for culture or RNA extraction, flow cytometry analysis of immune cell populations. Here, we describe the ex vivo stimulation of T cell populations for intracellular cytokine quantification (IFN&#947; and TNF&#945;) and degranulation activity (CD107a) as a measure of overall cytotoxicity. Whole-tumor digests were stimulated with phorbol myristate acetate and ionomycin for 5 h, in the presence of anti-CD107a antibody in order to upregulate cytokine production and degranulation. The addition of brefeldin A and monensin for the final 4 h was performed to block extracellular transport and maximize cytokine detection. Extra- and intra-cellular staining of cells was then performed for flow cytometry analysis, where the proportion of IFN&#947;+, TNF&#945;+ and CD107a+ CD4+ and CD8+ T cells was quantified.
This method provides a starting base to perform comprehensive analysis of the tumor microenvironment.

Generation of Orthotopic Pancreatic Tumors and Ex vivo Characterization of Tumor-Infiltrating T Cell Cytotoxicity

This protocol describes the surgical generation of orthotopic pancreatic tumors and the rapid digestion of freshly isolated murine pancreatic tumors. Following digestion, viable immune cell populations can be used for further downstream analysis, including ex vivo stimulation of T cells for intracellular cytokine detection by flow cytometry.

In vivo models of pancreatic cancer provide invaluable tools for studying disease dynamics, immune infiltration and new therapeutic strategies. The ...

Cancer Research

Experimental Infection with Listeria monocytogenes as a Model for Studying Host Interferon-&#947; Responses

L. monocytogenes is a gram-positive bacterium that is a cause of food borne disease in humans. Experimental infection of mice with this pathogen has been highly informative on the role of innate and adaptive immune cells and specific cytokines in host immunity against intracellular pathogens. Production of IFN-&#947; by innate cells during sublethal infection with L. monocytogenes is important for activating macrophages and early control of the pathogen1-3. In addition, IFN-&#947; production by adaptive memory lymphocytes is important for priming the activation of innate cells upon reinfection4. The L. monocytogenes infection model thus serves as a great tool for investigating whether new therapies that are designed to increase IFN-&#947; production have an impact on IFN-&#947; responses in vivo and have productive biological effects such as increasing bacterial clearance or improving mouse survival from infection. Described here is a basic protocol for how to conduct intraperitoneal infections of C57BL/6J mice with the EGD strain of L. monocytogenes and to measure IFN-&#947; production by NK cells, NKT cells, and adaptive lymphocytes by flow cytometry. In addition, procedures are described to: (1) grow and prepare the bacteria for inoculation, (2) measure bacterial load in the spleen and liver, and (3) measure animal survival to endpoints. Representative data are also provided to illustrate how this infection model can be used to test the effect of specific agents on IFN-&#947; responses to L. monocytogenes and survival of mice from this infection.

This protocol describes how to inoculate C57BL/6J mice with the EGD strain of Listeria monocytogenes (L. monocytogenes) and to measure interferon-&#947; (IFN-&#947;) responses by natural killer (NK) cells, natural killer T (NKT) cells, and adaptive T lymphocytes post-infection. This protocol also describes how to conduct survival studies in mice after infection with a modified LD50 dose of the pathogen.

L. monocytogenes is a gram-positive bacterium that is a cause of food borne disease in humans. Experimental infection of mice with this pathogen has been ...

Visualization of IL-22-expressing Lymphocytes Using Reporter Mice

Reporter mice have been widely used to observe the localization of expression of targeted genes. This protocol focuses on a strategy to establish a new transgenic reporter mouse model. We chose to visualize interleukin (IL) 22 gene expression because this cytokine has important activities in the intestine, where it contributes to repair tissues damaged by inflammation. Reporter systems offer considerable advantages over other methods of identifying products in vivo. In the case of IL-22, other studies had first isolated cells from tissues and then re-stimulated the cells in vitro. IL-22, which is normally secreted, was trapped inside cells using a drug, and intracellular staining was used to visualize it. This method identifies cells capable of producing IL-22, but it does not determine whether they were doing so in vivo. The reporter design includes inserting a gene for a fluorescent protein (tdTomato) into the IL-22 gene in such a way that the fluorescent protein cannot be secreted and therefore remains trapped inside the producing cells in vivo. Fluorescent producers can then be visualized in tissue sections or by ex vivo analysis through flow cytometry. The actual construction process for the reporter included recombineering a bacterial artificial chromosome that contained the IL-22 gene. This engineered chromosome was then introduced into the mouse genome. Homeostatic IL-22 reporter expression was observed in different mouse tissues, including the spleen, thymus, lymph nodes, Peyer&#39;s patch, and intestine, by flow cytometry analysis. Colitis was induced by T-cell (CD4+CD45RBhigh) transfer, and reporter expression was visualized. Positive T cells were first present in the mesenteric lymph nodes, and then they accumulated inside the lamina propria of the distal small intestine and colon tissues. The strategy using BACs gave good-fidelity reporter expression compared to IL-22 expression, and it is simpler than knock-in procedures.

We describe here a transgenic reporter mouse model to visualize the IL-22-producing cells inside different mouse tissues. This method can be used to track the location of other cytokines or secretary proteins in the mouse.

Reporter mice have been widely used to observe the localization of expression of targeted genes. This protocol focuses on a strategy to establish a new ...

Using a Bacterial Pathogen to Probe for Cellular and Organismic-level Host Responses

There are a variety of strategies bacterial pathogens employ to survive and proliferate once inside the eukaryotic cell. The so-called 'cytosolic' pathogens (Listeria monocytogenes, Shigella flexneri, Burkholderia pseudomallei, Francisella tularensis, and Rickettsia spp.) gain access to the infected cell cytosol by physically and enzymatically degrading the primary vacuolar membrane. Once in the cytosol, these pathogens both proliferate as well as generate sufficient mechanical forces to penetrate the plasma membrane of the host cell in order to infect new cells. Here, we show how this terminal step of the cellular infection cycle of L. monocytogenes (Lm) can be quantified by both colony-forming unit assays and flow cytometry and give examples of how both pathogen- and host-encoded factors impact this process. We also show a close correspondence of Lm infection dynamics of cultured cells infected in vitro and those of hepatic cells derived from mice infected in vivo. These function-based assays are relatively simple and can be readily scaled up for discovery-based high-throughput screens for modulators of eukaryotic cell function.

We describe both in vitro and in vivo infection assays that can be used to analyze the activities of host-encoding factors.

There are a variety of strategies bacterial pathogens employ to survive and proliferate once inside the eukaryotic cell. The so-called 'cytosolic' ...

Fluorescence-mediated Tomography for the Detection and Quantification of Macrophage-related Murine Intestinal Inflammation

Murine models of disease are indispensable to scientific research. However, many diagnostic tools such as endoscopy or tomographic imaging are not routinely employed in animal models. Conventional experimental readouts often rely on post mortem and ex vivo analyses, which prevent intra-individual follow-up examinations and increase the number of study animals needed. Fluorescence-mediated tomography enables the non-invasive, repetitive, quantitative, three-dimensional assessment of fluorescent probes. It is highly sensitive and permits the use of molecular makers, which allows for the specific detection and characterization of distinct molecular targets. In particular, targeted probes represent an innovative tool for analyzing gene activation and protein expression in inflammation, autoimmune disease, infection, vascular disease, cell migration, tumorigenesis, etc. In this article, we provide step-by-step instructions on this sophisticated imaging technology for the in vivo detection and characterization of inflammation (i.e., F4/80-positive macrophage infiltration) in a widely used murine model of intestinal inflammation. This technique might also be used in other research areas, such as immune cell or stem cell tracking.

Target-specific probes represent an innovative tool for analyzing molecular mechanisms, such as protein expression in various types of disease (e.g., inflammation, infection, and tumorigenesis). In this study, we describe a quantitative three-dimensional tomographic assessment of intestinal macrophage infiltration in a murine model of colitis using F4/80-specific fluorescence-mediated tomography.

Murine models of disease are indispensable to scientific research. However, many diagnostic tools such as endoscopy or tomographic imaging are not ...

Medicine

Evaluation of T Follicular Helper Cells and Germinal Center Response During Influenza A Virus Infection in Mice

T Follicular Helper (Tfh) cells are an independent CD4+&#160;T cell subset specialized in providing help for germinal center (GC) development and generation of high-affinity antibodies. In influenza virus infection, robust Tfh and GC B cell responses are induced to facilitate effective virus eradication, which confers a qualified mouse model for Tfh-associated study. In this paper, we described protocols in detection of basic Tfh-associated immune response during influenza virus infection in mice. These protocols include: intranasal inoculation of influenza virus; flow cytometry staining and analysis of polyclonal and antigen-specific Tfh cells, GC B cells and plasma cells; immunofluorescence detection of GCs; enzyme-linked immunosorbent assay (ELISA) of influenza virus-specific antibody in serum. These assays basically quantify the differentiation and function of Tfh cells in influenza virus infection, thus providing help for studies in elucidating differentiation mechanism and manipulation strategy.

This paper describes protocols of evaluating Tfh and GC B response in mouse model of influenza virus infection.

T Follicular Helper (Tfh) cells are an independent CD4+&#160;T cell subset specialized in providing help for germinal center (GC) development and ...

Deciphering Early Follicular Helper T-Cell Commitment in Acute LCMV Infection

Accessing Early Differentiation of Virus-Specific Follicular Helper CD4+ T Cell in Acute LCMV-Infected Mice

Follicular Helper T (TFH) cells are perceived as an independent CD4+ T cell lineage that assists cognate B cells in producing high-affinity antibodies, thus establishing long-term humoral immunity. During acute viral infection, the fate commitment of virus-specific TFH cells is determined in the early infection phase, and investigations of the early-differentiated TFH cells are crucial in understanding T cell-dependent humoral immunity and optimizing vaccine design. In the study, using a mouse model of acute lymphocytic choriomeningitis virus (LCMV) infection and the TCR-transgenic SMARTA (SM) mouse with CD4+ T cells specifically recognizing LCMV glycoprotein epitope I-AbGP66-77, we described procedures to access the early fate commitment of virus-specific TFH cells based on flow cytometry stainings. Furthermore, by exploiting retroviral transduction of SM CD4+ T cells, methods to manipulate gene expression in early-differentiated virus-specific TFH cells are also provided. Hence, these methods will help in studies exploring the mechanism(s) underlying the early commitment of virus-specific TFH cells.

Author Spotlight: Elucidating the Pathways of TFH Cell Differentiation in Acute LCMV Challenges

The current study showcases protocols for assessing the early fate commitment of virus-specific TFH cells and manipulating gene expression in these cells.

Follicular Helper T (TFH) cells are perceived as an independent CD4+ T cell lineage that assists cognate B cells in producing high-affinity antibodies, ...

Isolation of Splenic Microvesicles in a Murine Model of Intraperitoneal Bacterial Infection

Microvesicles (MVs) are submicron fragments released from the plasma membrane of activated cells that act as proinflammatory and procoagulant cellular effectors. In rats, spleen MVs (SMVs) are surrogate markers of pathophysiological conditions. Previous in vitro studies demonstrated that Porphyromonas gingivalis (P. gingivalis), a major periodontal pathogen, enables&#160;the endothelial shedding and apoptosis while lipopolysaccharide (LPS) favors the shedding of splenocyte-derived microvesicles (SMVs). In vivo studies showed the feasibility of pharmacological control of SMV shedding. The present protocol establishes a standardized procedure for isolating splenic SMVs from the P. gingivalis acute murine infection model.&#160;P. gingivalis infection was induced in young C57BL/6 mice by intraperitoneal injection (three injections of 5 x 107 bacteria/week). After two weeks, the spleens were collected, weighed, and the splenocytes were counted. SMVs were isolated and quantified by protein, RNA, and prothrombinase assays. Cell viability was assessed by either propidium iodide or trypan blue exclusion dyes. Following splenocyte extraction, neutrophil counts were obtained by flow cytometry after 24 h of splenocyte culture. In P. gingivalis-injected mice, a 2.5-fold increase in spleen weight and a 2.3-fold rise in the splenocyte count were observed, while the neutrophils count was enhanced by 40-folds. The cell viability of splenocytes from P. gingivalis-injected mice ranged from 75%-96% and was decreased by 50% after 24 h of culture without any significant difference compared to unexposed controls. However, splenocytes from injected mice shed higher amounts of MVs by prothrombinase assay or protein measurements. The data demonstrate that the procoagulant SMVs are reliable tools to assess an early spleen response to intraperitoneal&#160;P. gingivalis infection.

Microvesicles shed from the plasma membrane act as cellular effectors. Spleen microvesicles (SMVs) are surrogate markers of pathophysiological conditions. In rats and mice, SMV content and properties characterize aging or inflammation and are altered by cytoprotective treatments, making them a valuable yet abundant monitoring tool for preclinical research.

Microvesicles (MVs) are submicron fragments released from the plasma membrane of activated cells that act as proinflammatory and procoagulant cellular ...

Biology

ELISPOT Assay: Detection of IFN-&#947; Secreting Splenocytes

Source: Tonya J. Webb1 
1 Department of Microbiology and Immunology, University of Maryland School of Medicine and the Marlene and Stewart Greenebaum Comprehensive Cancer Center, Baltimore, Maryland 21201
ELISPOT is a standardized, reproducible assay used to detect cellular immune responses. The assay utilizes an enzyme-linked immunosorbent assay (ELISA)- based method to detect single-cell immune responses which can be visualized by spots, hence the name ELISPOT. ELISPOT was first described in 1983, by Czerkinsky, as a method of enumerating the number of B cell hybridomas producing antigen-specific immunoglobulins (1). The same group further developed the assay to measure the frequency of cytokine producing T lymphocytes. Now ELISPOT has become a gold standard for measuring antigen-specific T cell immunity in clinical trials and vaccine candidates. For example, after vaccination or during an infection, plasma cells and memory B cells secrete antibodies that provide protection. Typically, these B cell responses are assessed by measuring serum titers of antigen-specific antibodies. However, this type of analysis, typically measured by ELISA, may not include memory B cells, which can be present even in the absence of detectable serum antibody levels. Furthermore, it has been well-established that circulating memory B cells are important for the rapid and protective antibody response observed following pathogen re-exposure, thus it is critical to be able to detect these cells. Therefore, to clearly assess antigen-specific memory B-cell responses, both ELISA and ELISPOT should be used (2).
ELISPOT assay uses a plate containing membrane-lined wells that are coated with antibodies in order to capture secreted proteins of interest. Then, the plate is loaded with cells and stimuli to induce protein production. The secreted proteins are captured by the antibodies coated on the surface. After appropriate incubation time, cells are removed and the secreted molecule is detected by using a biotinylated antibody that is specific for a different epitope, as compared to the capture antibody. Next, streptavidin peroxidase is added, followed by the addition of a substrate that allows the detection of the spots (Figure 1). The strength of this assay is that it allows one to quantitate the number of cells producing the protein of interest. Importantly, one can assess if there are changes in the total number of cells producing a specific protein or if individual cells within a population are producing more protein. Moreover, it can provide information regarding kinetics and can be used to assess overall immune activation (mitogen stimulation) relative to antigen-specific responses (antigen simulation). The ELISPOT assay will permit the detection one activated cell amongst 300,000 cells following mitogenic or antigen-specific activation.
<img alt="Figure 1" class="xfigimg" src="/files/ftp_upload/10497/10497fig1.jpg" /> 
Figure 1: ELISPOT protocol overview.
The major advantages of this assay are its- a. Simplicity- the protocol is relatively simple and straightforward. It does not require technical expertise, b. Sensitivity- it permits the detection of immune cells at the single cell level and requires very few cells compared to other methods such as flow cytometry, c. Functionality- it provides quantitative data regarding immune function.
This lab exercise demonstrates the ELISPOT protocol for detection of IFN-&#947; secreting-splenocytes, but as mentioned above this assay can also be used to assess antibody secretion by B cells (3).

ELISPOT Assay: Detection of IFN-&amp;#947; Secreting Splenocytes

Source: Tonya J. Webb1
1 Department of Microbiology and Immunology, University of Maryland School of Medicine and the Marlene and Stewart Greenebaum ...

Imaging of In Situ Interferon Gamma Production in the Mouse Spleen following Listeria monocytogenes Infection

Summary

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Evaluation of T Follicular Helper Cells and Germinal Center Response During Influenza A Virus Infection in Mice

Accessing Early Differentiation of Virus-Specific Follicular Helper CD4⁺ T Cell in Acute LCMV-Infected Mice

Isolation of Splenic Microvesicles in a Murine Model of Intraperitoneal Bacterial Infection

ELISPOT Assay: Detection of IFN-γ Secreting Splenocytes