The authors gratefully thank Maria Herrero and Eliseo Rivas for their helpful discussion and advice. This work was supported by the Ministerio de Econom&#237;a y Competitividad &#8212; European Regional Development Fund, European Union [grant number BES- 2010-037992 to E. F.]; the Instituto Nacional de Investigaci&#243;n y Tecnolog&#237;a Agraria y Alimentaria [grant numbers RFP2015-00015-00, RTA2014-00085-00, RTA2017-00003-00]; and the Gobierno de Arag&#243;n &#8212; European Social Fund, European Union [Grupo Consolidado A12-17R].

1. Dormancy Determination and Plant Material Collection
<ol>
	<li>Sample the flower buds in the field. Dormancy studies are long-term experiments and require adult trees big enough to collect buds and shoots all winter without compromising the trees&#8217; development during the next spring. Special orchard management could be required depending on the training system; thus, pruning may be less severe than for fruit production purposes.
	<ol>
		<li>Each week, from the start of autumn until the onset of bud break, colle...

<ol>
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F. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Determination+of+starch+in+ovules+of+the+sour+cherry+cv.+&amp;#34;Stevnsbaer.&amp;#34.">Determination of starch in ovules of the sour cherry cv. &amp;#34;Stevnsbaer.&amp;#34.</a> European Journal of Horticultural Science. 71 (3), 120-124 (2006).</li><li>Johansen, D. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> Plant microtechnique. , (1940).</li><li>Ruzin, S. E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> Plant microtechnique and microscopy. , (1999).</li><li>Rodrigo, J., Rivas, E., Herrero, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Starch+determination+in+plant+tissues+using+a+computerized+image+analysis+system.">Starch determination in plant tissues using a computerized image analysis system.</a> Physiologia Plantarum. 99 (1), 105-110 (1997).</li><li>Alcaraz, M. L., Hormaza, J. 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L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Endodormancy,+paradormancy,+and+ecodormancy+-+Physiological+terminology+and+classification+for+dormancy+research.">Endodormancy, paradormancy, and ecodormancy - Physiological terminology and classification for dormancy research.</a> HortScience. 22 (3), 371-377 (1987).</li><li>Hedhly, A., Vogler, H., Eichenberger, C., Grossniklaus, U. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Whole-mount+clearing+and+staining+of+arabidopsis+flower+organs+and+siliques.">Whole-mount clearing and staining of arabidopsis flower organs and siliques.</a> Journal of Visualized Experiments. 2018 (134), 1-10 (2018).</li><li>Kaufmann, H., Blanke, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Changes+in+carbohydrate+levels+and+relative+water+content+(RWC)+to+distinguish+dormancy+phases+in+sweet+cherry.">Changes in carbohydrate levels and relative water content (RWC) to distinguish dormancy phases in sweet cherry.</a> Journal of Plant Physiology. 218 (July), 1-5 (2017).</li><li>Herrero, M., Dickinson, H. 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The authors have nothing to disclose.

Dormancy in woody perennials presents clear implications in fruit production and forestry in a changing climate, although the biological process behind dormancy remains unclear. Dormancy studies can be approached from different points of view, but the research looking for a biological marker for winter dormancy has intensified over the last years. However, most attempts to find an unequivocal indicator showing when a bud has broken dormancy have been unsuccessful3. The methodology described herein...

Temperate woody perennials adapt to the seasons by modulating their growth and development. While they develop during spring and summer, they stop growing during the autumn to go dormant in winter1. Although dormancy allows them to survive at low winter temperatures, chilling is a prerequisite for a proper budburst in spring2. The important implications of dormancy in temperate fruit production and forestry have led to diverse efforts to determine and predict the dormancy period3. In fruit tree species, empirical experiments transferring shoots to forcing conditions and statistical predictions based on data of flowering are current approaches to determine the date of the breaking of dormancy, which allows researchers to estimate the chilling requirements for each cultivar. However, how to determine the dormancy status based on biological processes remains unclear3. 
Flowering in temperate fruit trees, such as sweet cherry (Prunus avium L.), occurs once a year and lasts about a fortnight. However, flowers start to differentiate and develop about 10 months earlier, during the previous summer4. Flower primordia stop growing during the autumn to remain dormant inside the buds during winter. In this period, each cultivar needs to accumulate a particular chilling requirement for proper flowering4. Despite the lack of phenological changes in the buds during winter, flower primordia are physiologically active during dormancy, and the accumulation of chilling temperatures has been recently associated with the dynamic of starch accumulation or decrease within the cells of the ovary primordium, offering a new approach for dormancy determination5. However, the small size and the location of the ovary primordium require a special methodology.
Starch is the major storage carbohydrate in woody plant species6. Thus, changes in starch have been related to the physiological activity of the flower tissues, which need carbohydrates to support their development7,8. Different key events during the reproductive process are also related to variations in starch content in different floral structures, such as anther meiosis9, the growth of the pollen tubes through the style or ovule fertilization10. Histochemical techniques allow the detection of starch in each particular tissue of the flower primordia during dormancy. However, the difficulty remains in quantifying that starch to allow following its pattern of accumulation/decrease over time or comparing the starch content among tissues, cultivars, or years. This is due to the little amount of tissue available for the analytical techniques11. As an alternative, image analysis linked to microscopy12 allows the quantification of the starch in very small samples of plant tissue13. 
Approaches combining microscopy and image analysis have been used to quantify the content of different components in plant tissues, such as callose14, microtubes15, or starch16, by measuring the size of the area dyed by specific stains. For starch, it can be easily detected using the potassium iodide-iodine (I2KI) reaction17. This method is highly specific; I2KI intercalates within the laminar structure of starch grains and forms a dark blue or reddish-brown color, depending on the amylose content of the starch18. Sections stained with I2KI stain show adequate contrast between starch and the background tissue, allowing an unequivocal starch detection and the subsequent quantification by the image analysis system19. Although this dye is not stoichiometric, the accumulation of iodine is proportional to the length of the starch molecule, which can highly vary17. Thus, the size of the stained area expressed as the number of pixels may not reflect accurately the content of starch, since high differences in starch content could be found between fields with stained areas of similar size. As an alternative, the starch content may be evaluated by measuring the optical density of the stained granules on black and white images obtained from the microscope, as it has been reported in different tissues in apricot8,13,19, avocado10,20, and olive21.
Here, we describe a methodology that combines the experimental determination of dormancy status with the quantification of starch content in the ovary primordium tissue from autumn to spring in sweet cherry, offering a new tool for the understanding and prediction of dormancy based on the study of the biological mechanisms linked with dormancy.

<table border="0" cellpadding="0" cellspacing="0" width="767">
	<tbody>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">Precision scale</td>
			<td style="width:251px;">Sartorius</td>
			<td style="width:133px;">CP225D</td>
			<td style="width:167px;"></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">Stereoscopic microscope</td>
			<td style="width:251px;">Leica Microsystems</td>
			<td style="width:133px;">MZ-16</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">Drying-stove</td>
			<td style="width:251px;">Memmert</td>
			<td style="width:133px;">U15</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">Paraffin Embedding station</td>
			<td style="width:251px;">Leica Microsystems</td>
			<td style="width:133px;">EG1140H</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">Rotatory microtome</td>
			<td style="width:251px;">Reichert-Jung</td>
			<td style="width:133px;">1130/Biocut</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">Microtome blade</td>
			<td style="width:251px;">Feather</td>
			<td style="width:133px;">S35</td>
			<td>Stainless steel</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">Bright field microscope</td>
			<td style="width:251px;">Leica Microsystems</td>
			<td style="width:133px;">DM2500</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">Digital Camera</td>
			<td style="width:251px;">Leica Microsystems</td>
			<td style="width:133px;">DC-300</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">Image Analysis System</td>
			<td style="width:251px;">Leica Microsystems</td>
			<td style="width:133px;">Quantiment Q550</td>
			<td></td>
		</tr>
	</tbody>
</table>

combining histochemical staining and image analysis to quantify starch in the ovary primordia of sweet cherry during winter dormancy

Changes in starch in small structures are associated with key events during several plant developmental processes, including the reproductive phase from pollination to fertilization and the onset of fruiting. However, variations in starch during flower differentiation are not completely known, mainly due to the difficulty of quantifying the starch content in the particularly small structures of the flower primordia. Here, we describe a method for the quantification of starch in the ovary primordia of sweet cherry (Prunus avium L.) by using an image analysis system attached to the microscope, which allows relating the changes in starch content with the different phases of dormancy from autumn to spring. For this purpose, the dormancy status of flower buds is determined by evaluating the bud growth of shoots transferred to controlled conditions at different moments in winter time. For the quantification of starch in the ovary primordia, flower buds are sequentially collected, fixed, embedded in paraffin wax, sectioned, and stained with I2Kl (potassium iodide-iodine). Preparations are observed under the microscope and analyzed by an image analyzer that clearly distinguishes starch from the background. Starch content values are obtained by measuring the optical density of the image that corresponds to the stained starch, considering the sum of the optical density of each pixel as an estimation of the starch content of the frame studied.

Dormancy studies require the determination of the moment when the chilling requirements are fulfilled. Despite the lack of phenological changes during winter under field conditions (Figure 1A), cherry trees do not recover the capacity of growth in suitable conditions until they pass a certain period under low temperatures. The regular transference of shoots to a controlled conditions chamber (Figure 1B) during winter time allowed...

Watch this Scientific Journal Video about Combining Histochemical Staining and Image Analysis to Quantify Starch in the Ovary Primordia of Sweet Cherry during Winter Dormancy at JoVE.com

Combining Histochemical Staining and Image Analysis to Quantify Starch in the Ovary Primordia of Sweet Cherry during Winter Dormancy

We present a methodology to quantify the starch content in the ovary primordia in sweet cherry (Prunus avium L.) during winter dormancy by using an image analysis system combined with histochemical techniques.

Changes in starch in small structures are associated with key events during several plant developmental processes, including the reproductive phase from ...

This method can help answer key questions about dormancy in woody plant, such as why do the flower buds need to accumulate cold during winter to flower properly. The main advantage of this technique is it allows the quantification of the starch in very small samples of flower primordium. This approach is very useful to detect the physiological activity of the flower primordium during dormancy and can be also applied to other tree species like apricot or plum.Though this method can provide insight into the dormant flower bud, it can also be applied to other processes such as the reproductive phase from pollination to the onset of fruiting. To begin, collect five shoots from the field. Then weigh and fix 10 flower buds in a 10-milliliter glass tube with fixative solution for at least 24 hours at four degrees Celsius.After this, discard the fixative and add enough 75%ethanol to cover the samples. Obtain three shoots that are 15 to 30 centimeters in length and five millimeters in diameter with 10 flower buds each. Then place the shoots on water-soaked florist's foam in a growth chamber.After 10 days in the growth chamber, remove the flower buds from the shoots and weigh them. Every week from the beginning of autumn until budburst in spring, evaluate the growth of the flower buds. Remove the external bud scales from each sample, then place each bud in a watchmaker's glass containing 75%ethanol.Use precision forceps and an ophthalmologic scalpel to dissect the buds and obtain at least one flower primordium from each bud. Embed the samples individually in paraffin wax to form a block and section them on a rotary microtome. After sectioning the samples, apply a drop of fresh Lugol's iodine over a section.After five minutes, remove excess stain with blotting paper. Next apply a small drop of synthetic mounting media, place a small cover glass over the sample, and press hard. Once the mounting media is dry, observe the stained section under a brightfield microscope.First adjust the aperture diaphragm and the brightness control according to the text protocol. Then make sure there are no filters in the filter holder and select a brightfield condition in the microscope. After this, adjust the camera settings for the stained preparation without tissue.Fix the brightness at 50%Next activate the overexposure/underexposure function and adjust the exposure time at the limit of overexposure. Apply the white balance function and the shading correction. Measure the gray level of the resulting black-and-white image of the stained preparation without tissue.Then apply a 4N filter, acquire another black-and-white image of the preparation and measure the gray level. Next acquire an image of the same preparation without light and measure the gray level of the resulting image and calibrate. After this, acquire a color image of a sample section in TIFF format with a resolution of at least 300 dpi.Create a binary image corresponding to the stained area, then set the three color thresholds until the binary image exactly reflects the stained starch granules. Repeat this process with other preparations and tissues to fine-tune the final detection levels. Using the image analysis system, measure the sum of the optical density of every pixel under the mask to quantify the starch content in the field.In this protocol, flower bud growth and dormancy status were evaluated by measuring the increase in bud weight after 10 days in suitable conditions. During dormancy, no changes were observed after 10 days in suitable conditions. Once dormancy was overcome, the buds swelled and burst in the growth chamber.Starch content in the ovary primordium was quantified via image analysis in each microtomed section. Consistently, the amount of starch in early winter presented an optical density value less than 40, 000 and the maximum amount reached a value between 120, 000 and 140, 000 during both years of the study. Taking dormancy into account, the maximum amount of starch occurred concomitantly with the chilling fulfillment during both years.It's important to remember that the detection levels used by the image analyzer are directly dependent on the calibration of the system. This includes light condition, stain intensity, and magnification of the microscope. This condition must be fixed for all the preparations.The combination of histochemical techniques with image analysis has resulted very useful to examine the carbohydrate reserve of the flower primordium during the different phases of dormancy. It can be also applied to other species and tissues. The relationship between dormancy release and starch accumulation in the ovary primordia unveiled by the use of this method provide a sound basis to understand the biological basis of dormancy and chilling requirements.Future effort have to be focused on studying reliable biological indicators that could easily indicate the dormancy status of the tree. Meanwhile, the pattern of starch variations along dormancy can be used to frame further physiological and genetic studies.

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6.1K 조회수.  Centro de Investigación y Tecnología Agroalimentaria de Aragón. 이 방법은 꽃 봉오리가 제대로 꽃을 피우기 위해 겨울 동안 추위를 축적해야하는 이유와 같은 우디 식물의 휴면에 대한 주요 질문에 대답하는 데 도움이 될 수 있습니다. 이 기술의 주요 장점은 꽃 원시의 매우 작은 샘플에서 전분의 정량화를 허용합니다. 이러한 접근법은 휴면 기간 동안 꽃 프라이모르의 생리적 활성을 검출하는 데 매우 유용하며 살구 나 매화와 같은 다른 ?...