Name: photostimulation by femtosecond laser activates extracellular-signal-regulated kinase (erk) signaling or mitochondrial events in target cells
Uploaded: 2019-07-06T14:00:00
Description: Watch this Scientific Journal Video about Photostimulation by Femtosecond Laser Activates Extracellular-signal-regulated Kinase ERK Signaling or Mitochondrial Events in Target Cells at JoVE.com

The work was supported by National Natural Science Foundation of China (81571719 and 81661168014, 81673014, and 81870055), Shanghai Municipal Science and Technology Committee (18QA1402300 and 16XD1403100), and National Key R&#38;D Plan (2017YFA0104600).

CAUTION: The protocol presented below involves using NIR femtosecond laser and toxic chemicals. Please pay attention to all possible damages induced by experiment procedures. Please read safety data sheets of all relevant chemicals or other materials before use. Please follow the safety instructions of the laser facilities or consult professionals for guidance before operate laser source.
1. Experimental Preparation
<ol>
	<li>Setting up the photostimulation system</s...

<ol>
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We demonstrate a photostimulation strategy by combining a femtosecond laser with a laser scanning confocal microscope system. The photostimulation can directly work as a two-photon microscopy by defining Stim-B accordingly. We provide a detailed protocol for utilizing a short flash of femtosecond laser to trigger ERK signaling or mitoflashes in target cells. The different stimulation modes can be performed according to different experimental purposes and systems. Stim-A can be easily set up based on a confocal microscope...

The technology of controlling cellular signaling molecules is an important part of the development of life science. Traditionally, the most commonly-used method is biochemical treatment by drugs or biological materials1,2,3. Over the past decade, the invention of optogenetics opens a new era for cellular molecular signal modulation. Transfection with light sensitive proteins by gene engineering makes light become a powerful tool to modulate various protein activities in target cell. This technology has made encouraging progresses such as excitation and inhibition of neural signal, promoting gene expression, manipulating cellular signal patterns, leading different cell fates and pathological investigation4,5,6,7,8,9. However, light can only work by transfecting cells with optogenetic proteins. In current stage, there exist rare methods that enable light to control cellular molecules directly besides optogenetics.
Femtosecond laser has advanced biological researches by providing efficient multiphoton excitation while maintaining good biological safety. By deploying diverse photo processing strategies, it has realized numerous achievements such as multiphoton microscopy, microsurgeries and multiphoton optogenetic applications10,11,12,13,14,15,16. Recent investigations show that femtosecond laser stimulation has been demonstrated as a highly efficient optical method to directly induce molecular signaling events. It has been found that tightly-focused femtosecond laser irradiation on endoplasmic reticulum (ER) is able to deplete calcium in ER and activate calcium-release-activated calcium (CRAC) channels to form calcium signals in cells17. This photo-activated calcium signal can spread between multiple types of cells18,19,20. Furthermore, it also has the ability to activate cell signaling pathways such as nuclear factor of activated T cells (NFAT) and ERK signaling pathway21,22. By adjusting the intensity and localization of femtosecond laser exposure in cells, for example, focusing the laser on mitochondria, it can influence mitochondrial morphology and molecular events23,24,25. Specifically, bursts of mitochondrial ROS generation can be excited by photostimulation, which is remarked as fluorescent flashes in mitochondria (mitoflashes).
Hence, the photostimulation technology is of good potential to be widely applied in related biological research. It is also a good chance to extend femtosecond laser applications in controlling of cellular signaling molecules and functions besides microscopy. Here, we provide the technical details of photostimulation. The photostimulation is achieved by coupling a femtosecond laser to a confocal microscope to provide single target cell with a short flash photostimulation. It can initiate efficient and controllable ERK activation in the cell. If the photostimulation is located on the mitochondrial tubular structure, the mitochondrial membrane potential, morphology, ROS, and permeability transition pores, can all be controlled by the photostimulation. Based on this photostimulation scheme, we provide a detailed method of activating ERK signaling pathway and influencing multiple mitochondrial events in Hela cells. This protocol elucidates the process of delivering femtosecond laser stimulation into target cells.
The photostimulation system is established on a confocal microscope with a femtosecond laser coupling into it for simultaneous stimulation and continuous microscopy. The femtosecond laser (wavelength: 1,040 nm, repetition rate: 50 MHz, pulse width: 120 fs, maximum output average power: 1 W) is split into two beams before coupling. One is guided through a relay telescope consisting of a pair of lenses. It is then directly reflected into the back-aperture of an objective (60x, N.A. = 1.2, water immersion) to form a diffraction-limit focus (Stim-A). The other is reflected to the scanning optical path of confocal microscope to work as a two-photon scanning mode (Stim-B). Stim-A presents a fixed focus point in the center of field of view (FOV). Stim-B is a pre-designed partial confocal scanning area in the FOV. Stim-A and Stim-B are shown in Figure 1A. A CCD camera under the dichroic mirror (DM) provides bright-field imaging for monitoring the focus of femtosecond laser.
There are some crucial essentials for the following experiments. In this protocol, a femtosecond fiber laser source (1040 nm, 50 MHz, 120 fs) is used as an example. In practice, most commercial femtosecond oscillators can be used as long as the pulse width is shorter than 200 fs and the peak power density should be above the level of 1011 ~ 1012 W/cm2. For example, a Ti: Sapphire laser usually used for multiphoton microscopy is able to replace the femtosecond laser showed in Figure 1B. The laser power and some other photostimulation parameters need to be tuned because the optical parameters (pulse width, wavelength, and repetition rate) vary a lot in different femtosecond lasers that thus induce different multiphoton excitation efficiencies.
Along with femtosecond laser stimulation, the confocal microscopy provides continuous cell imaging to monitor molecular dynamics in real time in both Stim-A and Stim-B modes. Both photostimulation schemes (Stim-A and Stim-B) are controlled by a mechanical shutter with millisecond resolution (Figure 1).
In Stim-A mode, the position of laser focus is fixed in the center of FOV. A relay telescope is used to ensure the focus of femtosecond laser to be located on confocal imaging plane by tuning the distance between two lenses in the vertical direction (the laser propagation direction, vertical to the confocal imaging plane, as shown in Figure 1). By the bright-field imaging of CCD camera, the diameter of laser focus can be measured (~2 &#181;m, Figure 2B). The stimulation durations and exposure times are controlled by a shutter during the confocal imaging process.
In Stim-B mode, the stimulation area can be pre-assigned manually in the confocal imaging controlling software to any form like line, polygon, or circle. The shutter is synchronized with the confocal scanning process. It opens at the pre-designed time which is set through the confocal imaging controlling software. Then, the stimulation area is scanned by femtosecond laser as confocal microscopy. Thus, the sample is only stimulated by femtosecond laser when confocal scanning process enters a given imaging frame.
The photostimulation system can be established on both inverted and upright metallurgical microscopes according to the experiment subjects. In vitro cells cultured in Petri dishes are better to work with inverted microscopes. Animals, especially brains of live animals, are more suitable with upright microscopes. In this study, we take the inverted microscope as an example. It should be noted that the cover of Petri dish is not opened during the whole experiments.

<table>
	<tbody>
		<tr>
			<td>inverted microscope</td>
			<td>Olympus</td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>femtosecond laser</td>
			<td>Fianium</td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>CO2 incubation system</td>
			<td>Olympus</td>
			<td>MIU-IBC</td>
			<td></td>
		</tr>
		<tr>
			<td>petri dish</td>
			<td>NEST</td>
			<td>801002</td>
			<td></td>
		</tr>
		<tr>
			<td>petri dish with imprinted grid</td>
			<td>Ibidi</td>
			<td>81148</td>
			<td></td>
		</tr>
		<tr>
			<td>ERK-GFP</td>
			<td>addgene</td>
			<td>37145</td>
			<td>A gift from Rony Seger&#39;s lab</td>
		</tr>
		<tr>
			<td>mt-cpYFP</td>
			<td></td>
			<td></td>
			<td>A gift from Heping Cheng&#39;s lab</td>
		</tr>
		<tr>
			<td>mito-GFP</td>
			<td>Invitrogen</td>
			<td>C10508</td>
			<td></td>
		</tr>
		<tr>
			<td>Tetramethylrhodamine (TMRM)</td>
			<td>Invitrogen</td>
			<td>T668</td>
			<td>Dilute in DMSO</td>
		</tr>
		<tr>
			<td>polyethylenimine (PEI)</td>
			<td>Sigma-Aldrich</td>
			<td>9002-98-6</td>
			<td>Dilute in PBS</td>
		</tr>
		<tr>
			<td>paraformaldehyde</td>
			<td>Solarbio</td>
			<td>P8430</td>
			<td>Dilute in PBS</td>
		</tr>
		<tr>
			<td>Triton X-100</td>
			<td>Solarbio</td>
			<td>T8200</td>
			<td>Dilute in PBS</td>
		</tr>
		<tr>
			<td>Bovine Serum Albumin (BSA)</td>
			<td>Sigma-Aldrich</td>
			<td>9048-46-8</td>
			<td>Dilute in PBS</td>
		</tr>
		<tr>
			<td>Tween20</td>
			<td>Sigma-Aldrich</td>
			<td>9005-64-5</td>
			<td></td>
		</tr>
		<tr>
			<td>anti-eIF4E antibody</td>
			<td>abcam</td>
			<td>ab76256</td>
			<td></td>
		</tr>
		<tr>
			<td>anti-Bax antibody</td>
			<td>abcam</td>
			<td>ab53154</td>
			<td></td>
		</tr>
		<tr>
			<td>anti-cytochrome C antibody</td>
			<td>abcam</td>
			<td>ab90529</td>
			<td></td>
		</tr>
		<tr>
			<td>secondary antibody (anti-Rabbit IgG H&#38;L, Alexa Fluor 488)</td>
			<td>abcam</td>
			<td>ab150077</td>
			<td></td>
		</tr>
	</tbody>
</table>

photostimulation by femtosecond laser activates extracellular-signal-regulated kinase (erk) signaling or mitochondrial events in target cells

Direct control of cellular defined molecular events is important to life science. Recently, studies have demonstrated that femtosecond laser stimulation can simultaneously activate multiple cellular molecular signaling pathways. In this protocol, we show that through coupling femtosecond laser into a confocal microscope, cells can be stimulated precisely by the tightly-focused laser. Some molecular processes that can be simultaneously observed are subsequently activated. We present detailed protocols of the photostimulation to activate extracellular signal regulated kinase (ERK) signaling pathway in Hela cells. Mitochondrial flashes of reactive oxygen species (ROS) and other mitochondrial events can be also stimulated if focusing the femtosecond laser pulse on a certain mitochondrial tubular structure. This protocol includes pretreating cells before photostimulation, delivering the photostimulation by a femtosecond laser flash onto the target, and observing/identifying molecular changes afterwards. This protocol represents an all-optical tool for related biological researches.

The photostimulation can be performed simultaneously along with continuous confocal scanning microscopy. The photostimulation can start at any pre-defined time slot in the time-lapse confocal microscopy sequence. The confocal microscopy can monitor cellular molecules by fluorescent imaging. The molecular responses to photostimulation and other dynamics can be identified in this way. Theoretically, if ERK is activated, it will be phosphorylated move from the cytoplasm to cell nucleus<sup c...

Watch this Scientific Journal Video about Photostimulation by Femtosecond Laser Activates Extracellular-signal-regulated Kinase ERK Signaling or Mitochondrial Events in Target Cells at JoVE.com

Photostimulation by Femtosecond Laser Activates Extracellular-signal-regulated Kinase ERK Signaling or Mitochondrial Events in Target Cells

Tightly-focused femtosecond laser can deliver precise stimulation to cells by being coupled into a confocal microscopy enabling the real-time observation and photostimulation. The photostimulation can activate cell molecular events including ERK signaling pathway and mitochondrial flashes of reactive oxygen species.

Photostimulation by Femtosecond Laser Activates Extracellular-signal-regulated Kinase (ERK) Signaling or Mitochondrial Events in Target Cells

Direct control of cellular defined molecular events is important to life science. Recently, studies have demonstrated that femtosecond laser stimulation ...

Optical methods, such as optogenetics can provide the precise modulation of cellular molecular signals. Our protocol demonstrated an oral optical manipulation of cellular signal moleculars by femtosecond laser stimulation. By coupling our femtosecond laser into a confocal microscope, our technique can provide single-cell or subcellular-level operation by femtosecond laser stimulation and the real-time, molecular dynamic monitoring by confocal microscopy.This method can be applied to any fluorescent microscopy systems by coupling a femtosecond laser into the system in the proper manner. For anyone who is trying our method for the first time, please follow the separate instructions of the laser facility or seek guidance from professionals when operating a lab femtosecond laser source. To begin, turn on the femtosecond laser and the confocal microscope.Use reflective mirrors to direct the femtosecond laser beam through a mechanical shutter. Next, set a relay telescope consisting of a pair of lenses to expand the transmission beam width. This should be consistent with the back aperture of the objective.Now, steer the reflective mirrors to align the expanded beam into the microscope. Adjust the two reflective mirrors, pointed out here, to tune the focus of the femtosecond laser to the center of the field of view. Finally, measure and tune the lasers as described in the accompanying text protocol.Culture Hela cells using standard techniques. When ready to perform the experiment, transfect the cells with ERK2-GFP as described in the accompanying text protocol. Next, turn on the laser scanning confocal microscope and the femtosecond laser.Ensure that the laser's shutter is closed. Then, open the microscope software. Set the excitation laser at 488 nanometers, and set its power level at 0.1 milliwatts.Set the imaging size as 512 by 512 pixels, and the interval time of each pixel as 2.4 microseconds. Then, set the interval time between two frames at six seconds to minimize photo bleaching and photo damage to the cells. Also, set the total imaging frames at around 300 frames to provide about 30 minutes of continuous microscopy in an individual experiment.Take the dish containing the Hela cells transfected with ERK2-GFP from the incubator, and put the dish on the microscope stage. In the software, start fast scanning mode, and tune the objective to acquire clear fluorescent images of the cells. Then, stop fast scanning and switch to bright-field imaging mode using the CCD camera.Open the shutter and adjust the distance between the two lenses of the relay telescope to ensure that the diameter of the femtosecond laser focus is about two microns. Then, close the shutter to complete the adjustment. Set the power of the femtosecond laser at 15 to 40 milliwatts for an 810 nanometer laser, or a 20 to 60 milliwatts for a 1040 nanometer laser.Then, set the shutter opening time at 05 to 0.2 seconds. Use fast scanning mode to select a target cell that is strongly expressing ERK2-GFP. Once found, move the stage in order to localize the cytosol area of the selected target cell so that it is at the center of the field of view when under bright-field imaging.Once centered, click on the start button to begin continuous imaging. Open the shutter at any predefined time slot to deliver the femtosecond laser stimulation into the target cell. When the imaging process is complete, save the imaging data for further analysis.Set the power of the femtosecond laser at 15 to 40 milliwatts and 810 nanometers and 20 to 60 milliwatts and 1040 nanometers at the specimen. Then, take the dish containing cells transfected with ERK2-GFP from the incubator and put it on the microscope stage. Use fast scanning mode to select the target cell well expressing ERK2-GFP.Then, set the confocal imaging process and define a special scanning frame as the stimulation frame in the imaging process. Define the parameter of the stimulation frame. Set a scanning region of two by two to three by three square microns at the cytosol area close to the nucleus in the target cell.Set the total scanning time at 0.1 to 0.2 seconds. Set the interval time between two frames at six seconds and set the total imaging frames at around 300 frames to provide about 30 minutes of continuous microscopy. Save the imaging data for further data analysis.Synchronize the shutter of the femtosecond laser with that of the confocal scanning according to the predefined photo stimulation area which is only open when the laser scanning drops in the stimulation frame. Click the start button to start the continuous microscopy imaging process. To observe mitochondrial morphological dynamics, transfect Hela cells with Mito-GFP to fluorescently indicate the mitochondria, or a base with mito-cpYFP to observe mitoflashes.Following transfection, turn on the femtosecond laser and ensure the shutter is closed. Then, turn on the laser scanning confocal microscope. Set the excitation laser at 488 nanometers.Then, set the power level of the 488 nanometer laser at 0.1 milliwatt. Additionally, set the imaging size to 512 by 512 pixels and the total imaging time of each frame to 2.2 seconds. Then, set the interval time between two frames at zero seconds and the total imaging frames as 200 frames to provide about 440 seconds of continuous microscopy in an individual experiment.Take the dish containing cells transfected with mito GFP or mitochondrial-targeted circularly permuted yellow fluorescent protein from the incubator and put the dish on the microscope stage. Check the status of the femtosecond laser to ensure that the focus of the femtosecond laser is located in the center of the field of view. Then, set a reference arrow at the center of the fluorescent imaging window to indicate the position of the focus.Next, set the power of the femtosecond laser at five to 30 miliwatts with the laser at 810 nanometers and 10 to 40 milliwatts for the laser at 1040 nanometers. Set the opening time of the shutter to 05 to 0.1 seconds. Use fast scanning mode to select the target cell that is well expressing mito GFP or the mitochondrial-targeted circularly permuted yellow fluorescent protein.Select one mitochondrion randomly in the target cell as the experimental subject. Next, move the microscope stage in order to localize the target mitochondrial tubular structure at the center of the field of view by fast scanning mode as indicated by the reference arrow. Click the start button to start continuous imaging.Finally, open the shutter at any predefined time to deliver the femtosecond laser stimulation into the target mitochondrial tubular structure. Wait until the imaging process is complete and then save the imaging data for further data analysis. Using the method presented in this protocol, ERK2 translocates into the nucleus after being treated with a short flash of the femtosecond laser.ERK2-GFP fluorescence reaches the maximum after several minutes of femtosecond laser stimulation. The ERK2 molecules will be dephosphorylated after activating downstream substrates in the nucleus and then the ERK2 comes back to the cytoplasm indicated by a decreasing of nuclear GFP fluorescence. ERK2 can be activated multiple times by multiple photo stimulations.Therefore, it is possible to manipulate the ERK2 signal pattern precisely by controlling interval time between multiple stimuli. In addition, ERK2 can occasionally be activated in adjacent cells around the stimulated cell. This observation indicates that some diffusible molecules may be released by the cell treated with the femtosecond laser to activate ERK2 in the adjacent cells.Phosphorylation of ERK2 downstream protein eIF4E can be confirmed individualized by immunofluorescence microscopy. This result indicates that femtosecond laser stimulation can successfully activate the ERK signaling pathway. Mitochondrial oxidative flashes or mitoflashes are oxidative bursts in mitochondria that root from complex molecular dynamics.Implementing this photo stimulation scheme resulted in a successful mitoflash excitation. This photo stimulation also shows varieties of mitochondrial molecular dynamics including fragmentation and restoration of mitochondrial morphology as well as oscillation of mitochondrial membrane potential. Similar to photo activated mitoflashes, these mitochondria events have different performance with different power intensities.The most important thing is to make sure that the focus, size and the precision of the femtosecond laser is a property for the stimulation in cells. The near-infrared femtosecond laser may be hazardous to users. When following this protocol, wear proper protection and it prevents the laser from diffusing out from the optical table.

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Research

JoVE Journal

Biology

Imaging G-protein Coupled Receptor (GPCR)-mediated Signaling Events that Control Chemotaxis of Dictyostelium Discoideum

Many eukaryotic cells can detect gradients of chemical signals in their environments and migrate accordingly 1. This guided cell migration is referred as chemotaxis, which is essential for various cells to carry out their functions such as trafficking of immune cells and patterning of neuronal cells 2, 3. A large family of G-protein coupled receptors (GPCRs) detects variable small peptides, known as chemokines, to direct cell migration in vivo 4. The final goal of chemotaxis research is to understand how a GPCR machinery senses chemokine gradients and controls signaling events leading to chemotaxis. To this end, we use imaging techniques to monitor, in real time, spatiotemporal concentrations of chemoattractants, cell movement in a gradient of chemoattractant, GPCR mediated activation of heterotrimeric G-protein, and intracellular signaling events involved in chemotaxis of eukaryotic cells 5-8. The simple eukaryotic organism, Dictyostelium discoideum, displays chemotaxic behaviors that are similar to those of leukocytes, and D. discoideum is a key model system for studying eukaryotic chemotaxis. As free-living amoebae, D. discoideum cells divide in rich medium. Upon starvation, cells enter a developmental program in which they aggregate through cAMP-mediated chemotaxis to form multicullular structures. Many components involved in chemotaxis to cAMP have been identified in D. discoideum. The binding of cAMP to a GPCR (cAR1) induces dissociation of heterotrimeric G-proteins into G&gamma; and G&beta;&gamma; subunits 7, 9, 10. G&beta;&gamma; subunits activate Ras, which in turn activates PI3K, converting PIP2 into PIP3 on the cell membrane 11-13. PIP3 serve as binding sites for proteins with pleckstrin Homology (PH) domains, thus recruiting these proteins to the membrane 14, 15. Activation of cAR1 receptors also controls the membrane associations of PTEN, which dephosphorylates PIP3 to PIP2 16, 17. The molecular mechanisms are evolutionarily conserved in chemokine GPCR-mediated chemotaxis of human cells such as neutrophils 18. We present following methods for studying chemotaxis of D. discoideum cells. 1. Preparation of chemotactic component cells. 2. Imaging chemotaxis of cells in a cAMP gradient. 3. Monitoring a GPCR induced activation of heterotrimeric G-protein in single live cells. 4. Imaging chemoattractant-triggered dynamic PIP3 responses in single live cells in real time. Our developed imaging methods can be applied to study chemotaxis of human leukocytes.

Imaging G-protein Coupled Receptor GPCR-mediated Signaling Events that Control Chemotaxis of Dictyostelium Discoideum

Here, we describe detailed live cell imaging methods for investigating chemotaxis. We present fluorescence microscopic methods to monitor spatiotemporal dynamics of signaling events in migrating cells. Measurement of signaling events permits us to further understand how a GPCR-signaling network achieves gradient sensing of chemoattractants and controls directional migration of eukaryotic cells.

Many eukaryotic cells can detect gradients of chemical signals in their environments and migrate accordingly 1.  This guided cell migration is referred as ...

Determination of Lipid Raft Partitioning of Fluorescently-tagged Probes in Living Cells by Fluorescence Correlation Spectroscopy (FCS)

In the past fifteen years the notion that cell membranes are not homogenous and rely on microdomains to exert their functions has become widely accepted. Lipid rafts are membrane microdomains enriched in cholesterol and sphingolipids. They play a role in cellular physiological processes such as signalling, and trafficking1,2 but are also thought to be key players in several diseases including viral or bacterial infections and neurodegenerative diseases3.
Yet their existence is still a matter of controversy4,5. Indeed, lipid raft size has been estimated to be around 20 nm6, far under the resolution limit of conventional microscopy (around 200 nm), thus precluding their direct imaging. Up to now, the main techniques used to assess the partition of proteins of interest inside lipid rafts were Detergent Resistant Membranes (DRMs) isolation and co-patching with antibodies. Though widely used because of their rather easy implementation, these techniques were prone to artefacts and thus criticized7,8. Technical improvements were therefore necessary to overcome these artefacts and to be able to probe lipid rafts partition in living cells.
Here we present a method for the sensitive analysis of lipid rafts partition of fluorescently-tagged proteins or lipids in the plasma membrane of living cells. This method, termed Fluorescence Correlation Spectroscopy (FCS), relies on the disparity in diffusion times of fluorescent probes located inside or outside of lipid rafts. In fact, as evidenced in both artificial membranes and cell cultures, probes would diffuse much faster outside than inside dense lipid rafts9,10. To determine diffusion times, minute fluorescence fluctuations are measured as a function of time in a focal volume (approximately 1 femtoliter), located at the plasma membrane of cells with a confocal microscope (Fig. 1). The auto-correlation curves can then be drawn from these fluctuations and fitted with appropriate mathematical diffusion models11.
FCS can be used to determine the lipid raft partitioning of various probes, as long as they are fluorescently tagged. Fluorescent tagging can be achieved by expression of fluorescent fusion proteins or by binding of fluorescent ligands. Moreover, FCS can be used not only in artificial membranes and cell lines but also in primary cultures, as described recently12. It can also be used to follow the dynamics of lipid raft partitioning after drug addition or membrane lipid composition change12.

Determination of Lipid Raft Partitioning of Fluorescently-tagged Probes in Living Cells by Fluorescence Correlation Spectroscopy FCS

A technique to probe the lipid raft partitioning of fluorescent proteins at the plasma membrane of living cells is described. It takes advantage of the disparity in diffusion times of proteins located inside or outside of lipid rafts. Acquisition can be performed dynamically in control conditions or after drug addition.

In the past fifteen years the notion that cell membranes are not homogenous and rely on microdomains to exert their functions has become widely accepted. ...

FRET Microscopy for Real-time Monitoring of Signaling Events in Live Cells Using Unimolecular Biosensors

F&ouml;rster resonance energy transfer (FRET) microscopy continues to gain increasing interest as a technique for real-time monitoring of biochemical and signaling events in live cells and tissues. Compared to classical biochemical methods, this novel technology is characterized by high temporal and spatial resolution. FRET experiments use various genetically-encoded biosensors which can be expressed and imaged over time in situ or in vivo1-2. Typical biosensors can either report protein-protein interactions by measuring FRET between a fluorophore-tagged pair of proteins or conformational changes in a single protein which harbors donor and acceptor fluorophores interconnected with a binding moiety for a molecule of interest3-4. Bimolecular biosensors for protein-protein interactions include, for example, constructs designed to monitor G-protein activation in cells5, while the unimolecular sensors measuring conformational changes are widely used to image second messengers such as calcium6, cAMP7-8, inositol phosphates9 and cGMP10-11. Here we describe how to build a customized epifluorescence FRET imaging system from single commercially available components and how to control the whole setup using the Micro-Manager freeware. This simple but powerful instrument is designed for routine or more sophisticated FRET measurements in live cells. Acquired images are processed using self-written plug-ins to visualize changes in FRET ratio in real-time during any experiments before being stored in a graphics format compatible with the build-in ImageJ freeware used for subsequent data analysis. This low-cost system is characterized by high flexibility and can be successfully used to monitor various biochemical events and signaling molecules by a plethora of available FRET biosensors in live cells and tissues. As an example, we demonstrate how to use this imaging system to perform real-time monitoring of cAMP in live 293A cells upon stimulation with a &beta;-adrenergic receptor agonist and blocker.

F&#246;rster resonance energy transfer (FRET) microscopy is a powerful technique for real-time monitoring of signaling events in live cells using various biosensors as reporters. Here we describe how to build a customized epifluorescence FRET imaging system from commercially available components and how to use it for FRET experiments.

F&ouml;rster resonance energy transfer (FRET) microscopy  continues to gain increasing interest as a technique for real-time monitoring  of biochemical ...

Assessment of Mitochondrial Functions and Cell Viability in Renal Cells Overexpressing Protein Kinase C Isozymes

The protein kinase C (PKC) family of isozymes is involved in numerous physiological and pathological processes. Our recent data demonstrate that PKC regulates mitochondrial function and cellular energy status. Numerous reports demonstrated that the activation of PKC-a and PKC-&epsilon; improves mitochondrial function in the ischemic heart and mediates cardioprotection. In contrast, we have demonstrated that PKC-&alpha; and PKC-&epsilon; are involved in nephrotoxicant-induced mitochondrial dysfunction and cell death in kidney cells. Therefore, the goal of this study was to develop an in vitro model of renal cells maintaining active mitochondrial functions in which PKC isozymes could be selectively activated or inhibited to determine their role in regulation of oxidative phosphorylation and cell survival. Primary cultures of renal proximal tubular cells (RPTC) were cultured in improved conditions resulting in mitochondrial respiration and activity of mitochondrial enzymes similar to those in RPTC in vivo. Because traditional transfection techniques (Lipofectamine, electroporation) are inefficient in primary cultures and have adverse effects on mitochondrial function, PKC-&epsilon; mutant cDNAs were delivered to RPTC through adenoviral vectors. This approach results in transfection of over 90% cultured RPTC.
Here, we present methods for assessing the role of PKC-&epsilon; in: 1. regulation of mitochondrial morphology and functions associated with ATP synthesis, and 2. survival of RPTC in primary culture. PKC-&epsilon; is activated by overexpressing the constitutively active PKC-&epsilon; mutant. PKC-&epsilon; is inhibited by overexpressing the inactive mutant of PKC-&epsilon;. Mitochondrial function is assessed by examining respiration, integrity of the respiratory chain, activities of respiratory complexes and F0F1-ATPase, ATP production rate, and ATP content. Respiration is assessed in digitonin-permeabilized RPTC as state 3 (maximum respiration in the presence of excess substrates and ADP) and uncoupled respirations. Integrity of the respiratory chain is assessed by measuring activities of all four complexes of the respiratory chain in isolated mitochondria. Capacity of oxidative phosphorylation is evaluated by measuring the mitochondrial membrane potential, ATP production rate, and activity of F0F1-ATPase. Energy status of RPTC is assessed by determining the intracellular ATP content. Mitochondrial morphology in live cells is visualized using MitoTracker Red 580, a fluorescent dye that specifically accumulates in mitochondria, and live monolayers are examined under a fluorescent microscope. RPTC viability is assessed using annexin V/propidium iodide staining followed by flow cytometry to determine apoptosis and oncosis.
These methods allow for a selective activation/inhibition of individual PKC isozymes to assess their role in cellular functions in a variety of physiological and pathological conditions that can be reproduced in in vitro.

The effects of activation of protein kinase C (PKC) isozymes on mitochondrial functions associated with respiration and oxidative phosphorylation and on cell viability are described. The approach adapts adenoviral technique to selectively overexpress PKC isozymes in primary cell culture and a variety of assays to determine mitochondrial functions and energy status of the cell.

The protein kinase C (PKC) family of isozymes is involved in numerous physiological and pathological processes. Our recent data demonstrate that PKC ...

Confocal Imaging of Single Mitochondrial Superoxide Flashes in Intact Heart or In Vivo

Mitochondrion is a critical intracellular organelle responsible for energy production and intracellular signaling in eukaryotic systems. Mitochondrial dysfunction often accompanies and contributes to human disease. Majority of the approaches that have been developed to evaluate mitochondrial function and dysfunction are based on in vitro or ex vivo measurements. Results from these experiments have limited ability in determining mitochondrial function in vivo. Here, we describe a novel approach that utilizes confocal scanning microscopy for the imaging of intact tissues in live aminals, which allows the evaluation of single mitochondrial function in a real-time manner in vivo. First, we generate transgenic mice expressing the mitochondrial targeted superoxide indicator, circularly permuted yellow fluorescent protein (mt-cpYFP). Anesthetized mt-cpYFP mouse is fixed on a custom-made stage adaptor and time-lapse images are taken from the exposed skeletal muscles of the hindlimb. The mouse is subsequently sacrificed and the heart is set up for Langendorff perfusion with physiological solutions at 37 &deg;C. The perfused heart is positioned in a special chamber on the confocal microscope stage and gentle pressure is applied to immobilize the heart and suppress heart beat induced motion artifact. Superoxide flashes are detected by real-time 2D confocal imaging at a frequency of one frame per second. The perfusion solution can be modified to contain different respiration substrates or other fluorescent indicators. The perfusion can also be adjusted to produce disease models such as ischemia and reperfusion. This technique is a unique approach for determining the function of single mitochondrion in intact tissues and in vivo.

Confocal Imaging of Single Mitochondrial Superoxide Flashes in Intact Heart or In Vivo

Confocal scanning microscopy is applied for imaging single mitochondrial events in perfused heart or skeletal muscles in live animal. Real-time monitoring of single mitochondrial processes such as superoxide flashes and membrane potential fluctuations enables the evaluation of mitochondrial function in a physiologically relevant context and during pathological perturbations.

Mitochondrion is a critical intracellular organelle responsible for energy production and intracellular signaling in eukaryotic systems. Mitochondrial ...

Experimental Approaches to Study Mitochondrial Localization and Function of a Nuclear Cell Cycle Kinase, Cdk1

Although mitochondria possess their own transcriptional machinery, merely 1% of mitochondrial proteins are synthesized inside the organelle. The nuclear-encoded proteins are transported into mitochondria guided by their mitochondria targeting sequences (MTS); however, a majority of mitochondrial localized proteins lack an identifiable MTS. Nevertheless, the fact that MTS can instruct proteins to go into the mitochondria provides a valuable tool for studying mitochondrial functions of normally nuclear and/or cytoplasmic proteins. We have recently identified the cell cycle kinase CyclinB1/Cdk1 complex in the mitochondria. To specifically study the mitochondrial functions of this complex, mitochondrial overexpression and knock-down of this complex without interfering with its nuclear or cytoplasmic functions were essential. By tagging CyclinB1/Cdk1 with MTS, we were able to achieve mitochondrial overexpression of this complex to study its mitochondrial targets as well as functions. Via tagging dominant-negative Cdk1 with MTS, inhibition of Cdk1 activity was accomplished particularly in the mitochondria. Potential mitochondrial targets of CyclinB1/Cdk1 complex were identified using a gel-based proteomics approach. Unlike traditional 2D gel analysis, we employed 2-dimensional difference gel electrophoresis (2D-DIGE) technology followed by phosphoprotein staining to fluorescently label differentially phosphorylated proteins in mitochondrial Cdk1 expressing cells. Identification of phosphoprotein spots that were altered in wild type versus dominant negative Cdk1 bearing mitochondria revealed the identity of mitochondrial targets of Cdk1. Finally, to determine the effect of CyclinB1/Cdk1 mitochondrial localization in cell cycle progression, a cell proliferation assay using a synthetic thymidine analogue EdU (5-ethynyl-2&#8242;-deoxyuridine) was used to monitor the cells as they go through the cell cycle and replicate their DNA. Altogether, we demonstrated a variety of approaches available to study mitochondrial localization and activity of a cell cycle kinase. These are advanced, yet easy to follow methods that will be beneficial to many cell biology researchers.

Here, we outline how to study mitochondrial localization of a (cell cycle) kinase, and how to determine its sub-mitochondrial location as well as potential mitochondrial substrates/targets. Forced expression of proteins into the mitochondria provides a useful tool for studying the functional consequences of mitochondrial localization of a protein of interest.

Although mitochondria possess their own transcriptional machinery, merely 1% of mitochondrial proteins are synthesized inside the organelle. The ...

Imaging G Protein-coupled Receptor-mediated Chemotaxis and its Signaling Events in Neutrophil-like HL60 Cells

Eukaryotic cells sense and move towards a chemoattractant gradient, a cellular process referred as chemotaxis. Chemotaxis plays critical roles in many physiological processes, such as embryogenesis, neuron patterning, metastasis of cancer cells, recruitment of neutrophils to sites of inflammation, and the development of the model organism Dictyostelium discoideum. Eukaryotic cells sense chemo-attractants using G protein-coupled receptors. Visual chemotaxis assays are essential for a better understanding of how eukaryotic cells control chemoattractant-mediated directional cell migration. Here, we describe detailed methods for: 1) real-time, high-resolution monitoring of multiple chemotaxis assays, and 2) simultaneously visualizing the chemoattractant gradient and the spatiotemporal dynamics of signaling events in neutrophil-like HL60 cells.

Visual chemotaxis assays are essential for a better understanding of how eukaryotic cells control chemoattractant-mediated directional cell migration. Here, we describe detailed methods for: 1) real-time, high-resolution monitoring of multiple chemotaxis assays, and 2) simultaneously visualizing the chemoattractant gradient and the spatiotemporal dynamics of signaling events in neutrophil-like HL60 cells.

Eukaryotic cells sense and move towards a chemoattractant gradient, a cellular process referred as chemotaxis. Chemotaxis plays critical roles in many ...

Identification of Intracellular Signaling Events Induced in Viable Cells by Interaction with Neighboring Cells Undergoing Apoptotic Cell Death

Cells dying by apoptosis, also referred to as regulated cell death, acquire multiple new activities that enable them to influence the function of adjacent live cells. Vital activities, such as survival, proliferation, growth, and differentiation, are among the many cellular functions modulated by apoptotic cells. The ability to recognize and respond to apoptotic cells appears to be a universal feature of all cells, regardless of lineage or organ of origination. However, the diversity and complexity of the response to apoptotic cells mandates that great care be taken in dissecting the signaling events and pathways responsible for any particular outcome. In particular, one must distinguish among the multiple mechanisms by which apoptotic cells can influence intracellular signaling pathways within viable responder cells, including: receptor-mediated recognition of the apoptotic cell, release of soluble mediators by the apoptotic cell, and/or engagement of the phagocytic machinery. Here, we provide a protocol for identifying intracellular signaling events that are induced in viable responder cells following their exposure to apoptotic cells. A major advantage of the protocol lies in the attention it pays to dissection of the mechanism by which apoptotic cells modulate signaling events within responding cells. While the protocol is specific for a conditionally immortalized mouse kidney proximal tubular cell line (BU.MPT cells), it is easily adapted to cell lines that are non-epithelial in origin and/or derived from organs other than the kidney. The use of dead cells as a stimulus introduces several unique factors that can hinder the detection of intracellular signaling events. These problems, as well as strategies to minimize or circumvent them, are discussed within the protocol. Application of this protocol should aid our expanding knowledge of the broad influence that dead or dying cells exert on their live neighbors, both in health and in disease.

Here, we present a protocol for the determination of intracellular signaling events induced in viable cells by physical interaction with adjacent dead or dying cells. The protocol focuses on signaling events induced by receptor-mediated recognition of the dead cells, as opposed to their phagocytic uptake or release of soluble mediators.

Cells dying by apoptosis, also referred to as regulated cell death, acquire multiple new activities that enable them to influence the function of adjacent ...

Simultaneous Measurement of Mitochondrial Calcium and Mitochondrial Membrane Potential in Live Cells by Fluorescent Microscopy

Apart from their essential role in generating ATP, mitochondria also act as local calcium (Ca2+) buffers to tightly regulate intracellular Ca2+ concentration. To do this, mitochondria utilize the electrochemical potential across their inner membrane (&#916;&#936;m) to sequester Ca2+. The influx of Ca2+ into the mitochondria stimulates three rate-limiting dehydrogenases of the citric acid cycle, increasing electron transfer through the oxidative phosphorylation (OXPHOS) complexes. This stimulation maintains &#916;&#936;m, which is temporarily dissipated as the positive calcium ions cross the mitochondrial inner membrane into the mitochondrial matrix.
We describe here a method for simultaneously measuring mitochondria Ca2+ uptake and &#916;&#936;m in live cells using confocal microscopy. By permeabilizing the cells, mitochondrial Ca2+ can be measured using the fluorescent Ca2+ indicator Fluo-4, AM, with measurement of &#916;&#936;m using the fluorescent dye tetramethylrhodamine, methyl ester, perchlorate (TMRM). The benefit of this system is that there is very little spectral overlap between the fluorescent dyes, allowing accurate measurement of mitochondrial Ca2+ and &#916;&#936;m simultaneously. Using the sequential addition of Ca2+ aliquots, mitochondrial Ca2+ uptake can be monitored, and the concentration at which Ca2+ induces mitochondrial membrane permeability transition and the loss of &#916;&#936;m determined.

Mitochondria can utilize the electrochemical potential across their inner membrane (&#916;&#936;m) to sequester calcium (Ca2+), allowing them to shape cytosolic Ca2+ signaling within the cell. We describe a method for simultaneously measuring mitochondria Ca2+ uptake and &#916;&#936;m in live cells using fluorescent dyes and confocal microscopy.

Apart from their essential role in generating ATP, mitochondria also act as local calcium (Ca2+) buffers to tightly regulate intracellular Ca2+ ...

Subcellular Fractionation for ERK Activation Upon Mitochondrial-derived Peptide Treatment

Mitochondrial-derived peptides (MDPs) are a new class of peptides that are encoded by small open reading frames within other known genes of the mitochondrial genome. MDPs have a wide variety of biological effects such as protecting neurons from apoptosis, improving metabolic markers, and protecting cells from chemotherapy. Humanin was the first MDP to be discovered and is the most studied peptide among the MDP family. The membrane receptors and downstream signaling pathways of humanin have been carefully characterized. Additional MDPs such as MOTS-c and SHLP1-6 have been more recently discovered and the signaling mechanisms have yet to be elucidated. Here we describe a cell culture based method to determine the function of these peptides. In particular, cell fractionation techniques in combination with western blotting allow for the quantitative determination of activation and translocation of important signaling molecule. While there are other methods of cell fractionation, the one described here is an easy and straightforward method. These methods can be used to further elucidate the mechanism of action of these peptides and other therapeutic agents.

This protocol describes how to stimulate cells with mitochondrial-derived peptides and assess the signaling cascade and localization of phospho-proteins.