3D Cell-Printed Hypoxic Cancer-on-a-Chip for Recapitulating Pathologic Progression of Solid Cancer

Summary

Hypoxia is a hallmark of tumor microenvironment and plays a crucial role in cancer progression. This article describes the fabrication process of a hypoxic cancer-on-a-chip based on 3D cell-printing technology to recapitulate a hypoxia-related pathology of cancer.

Abstract

Cancer microenvironment has a significant impact on the progression of the disease. In particular, hypoxia is the key driver of cancer survival, invasion, and chemoresistance. Although several in vitro models have been developed to study hypoxia-related cancer pathology, the complex interplay of the cancer microenvironment observed in vivo has not been reproduced yet owing to the lack of precise spatial control. Instead, 3D biofabrication approaches have been proposed to create microphysiological systems for better emulation of cancer ecology and accurate anticancer treatment evaluation. Herein, we propose a 3D cell-printing approach to fabricate a hypoxic cancer-on-a-chip. The hypoxia-inducing components in the chip were determined based on a computer simulation of the oxygen distribution. Cancer-stroma concentric rings were printed using bioinks containing glioblastoma cells and endothelial cells to recapitulate a type of solid cancer. The resulting chip realized central hypoxia and aggravated malignancy in cancer with the formation of representative pathophysiological markers. Overall, the proposed approach for creating a solid-cancer-mimetic microphysiological system is expected to bridge the gap between in vivo and in vitro models for cancer research.

Introduction

The cancer microenvironment is a critical factor driving cancer progression. Multiple components, including biochemical, biophysical, and cellular cues, determine the pathological features of cancer. Among these, hypoxia is strongly associated with cancer survival, proliferation, and invasion¹. Due to the unlimited growth and division of cancer cells, nutrients and oxygen are continuously depleted, and a hypoxic gradient is generated. Under low-oxygen conditions, cells activate hypoxia-inducible transcription factor (HIF)-associated molecular cascade. This process induces a necrotic core, triggers metabolic changes, and initiates blood vessel hyperplasia and metastasis^2,3. Subsequently, hypoxia in cancer cells causes the destruction of neighboring normal tissues. Furthermore, hypoxia is strongly associated with the therapeutic resistance of solid tumors in multifactorial manners. Hypoxia may severely impede radiotherapy, as radiosensitivity is limited owing to reactive oxygen species^1,4. In addition, it decreases pH levels of cancer microenvironments, which decreases drug accumulation¹. Therefore, reproducing pathological features related to hypoxia in vitro is a promising strategy for scientific and pre-clinical findings.

Modeling a specific microenvironment of cancer is essential for understanding cancer development and exploring appropriate treatments. Although animal models have been widely used because of their strong physiological relevance, issues related to species differences and ethical problems exist⁵. Furthermore, although conventional 2D and 3D models allow for the manipulation and real-time imaging of cancer cells for an in-depth analysis, their architectural and cellular complexity cannot be fully recapitulated. For example, cancer spheroid models have been widely used, as cancer cell aggregation in a spheroid can naturally generate hypoxia in the core. Moreover, large numbers of cellular spheroids of uniform size have been produced using plastic- or silicone-based multi-well systems^6,7. However, the lower flexibility with regard to capturing the exact heterogeneous structure of cancerous tissues with conventional platforms has required the establishment of an advanced biofabrication technology to build a highly biomimetic platform to improve cancer research⁸.

3D microphysiological systems (MPSs) are useful tools to recapitulate the complex geometry and pathological progression of cancer cells⁹. As cancer cells sense the biochemical gradient of growth factors and chemokines and the mechanical heterogeneity reproduced on the system, important features of cancer development can be investigated in vitro. For instance, cancer viability, metastatic malignancy, and drug resistance depending on the varying oxygen concentrations has been studied using MPSs^10,11. Despite recent advancements, generating hypoxic conditions of in vitro models relies on complex fabrication procedures, including connection with physical gas pumps. Therefore, simple, and flexible methods to build cancer-specific microenvironments are needed.

3D cell printing technology has gained considerable attention because of its precise control of the spatial arrangement of biomaterials to recapitulate native biological architectures¹². In particular, this technology overcomes the existing limitations of 3D hypoxia models owing to its high controllability and feasibility for building the spatial features of the cancer microenvironment. 3D printing also facilitates computer-aided manufacturing through a layer-by-layer process, thereby providing a rapid, accurate, and reproducible construction of complex geometries to mimic actual tissue architectures. In addition to the advantages of existing manufacturing strategies for 3D MPSs, the pathophysiological features of cancer progression can be reproduced by patterning the biochemical, cellular, and biophysical components^13,14.

Herein, we present a 3D cell-printing strategy for a hypoxic cancer-on-a-chip for recapitulating the heterogeneity of a solid cancer (Figure 1)¹⁵. The fabrication parameters were determined via a computational simulation of central hypoxia formation in the system. Cancer-stroma concentric rings were printed using collagen bioinks containing glioblastoma cells and endothelial cells to emulate the pathophysiology of glioblastoma, a type of solid cancer. The formation of a radial oxygen gradient aggravated cancer malignancy, indicating strengthened aggressiveness. Furthermore, we indicate future perspectives for the applications of the chip to patient-specific preclinical models. The proposed approach for creating a solid-cancer-mimetic microphysiological system is expected to bridge the gap between in vivo and in vitro models of cancer.

Protocol

1. Computer simulation of oxygen gradient formation

1. Generation of a 3D geometry model for hypoxic cancer-on-a-chip printing
   1. Run a 3D CAD software.
   2. Sketch the geometry model of hypoxic cancer-on-a-chip. Click on Sketch and select the desired plane to draw the geometry. Refer to the drawing (Figure 2A) for the detail scale of each part.
   3. Set the thickness of the geometry by clicking on Feature-Protrusion Boss/Base. Enter the desired thickness (refer to Figure 2A) in the empty box and select the green check icon to form the 3D geometry.
      NOTE: The dimension of the cancer-on-a-chip is defined based on the desired volumes of media and hydrogel. In the present experiment, the desired volumes of media and hydrogel were approximately 1,500 µL and 500 µL, respectively, based on the previous practical experiences for resolution of extrusion-based bioprinter.
   4. Save the geometry file as a 3D CAD file format (.prt or .stl).
2. Determination of cellular density for induction of hypoxic core
   1. Run a physical diffusion simulation program.
   2. Click on LiveLink and select the CAD program used. Click on Synchronize to import the geometry of the hypoxic cancer-on-a-chip on the simulation program. As the inner space of the chamber will be filled with a culture medium in an actual experimental setting, oxygen will diffuse across the inner space of the chamber and the cellular construct, which will be composed of cell-laden hydrogels.
      NOTE: Refer to previous study for details on the physical parameters¹⁵.
   3. Define the imported 3D geometry as a control volume of the space wherein oxygen diffuses, and the cells consume oxygen (Figure 2B).
   4. Run a computer analysis for gas diffusion analysis following a user guide and previously established methods^16,17.
   5. From the computer analysis results, export the estimated oxygen concentration data over cross-section A-A' at each time point following the user guide. The governing equation is based on Fick's first law, as expressed in Eq. (1) (Figure 2C).
      
      where c is the concentration, D is the oxygen diffusion coefficient, N_cell is the density of the cells, is the maximum up-take rate of oxygen, and Km is the Michaelis-Menten constant. The constants were applied as described in a previous publication¹⁵.
      NOTE: Each time point means a step point to observe oxygen diffusion change over time.
   6. Evaluate whether the minimal oxygen level reaches a threshold of hypoxia and repeat the computer analysis process with an increment or decrement of cellular density.
      NOTE: Define that hypoxia gradient is formed in the construct if the oxygen level of 80% in the hydrogel area is less than 0.02 mM after 24 h.
   7. Confirm the number of cells required to generate the oxygen gradient inducing hypoxia in the central region from Fick's first law in step 1.2.5 and the simulation results from step 1.2.6.
      NOTE: In this protocol, cell number was 2 × 10⁶ cells/each construct.

2. Cell culture of cancer cells and stromal cells

1. Preparation of cell culture media to avoid physiological stress
   1. For U-87 MG cells (immortalized human glioblastoma cell line), place 12 mL of high-glucose Dulbecco's modified Eagle medium containing 10% fetal bovine serum, 100 U/mL penicillin, and 100 µg/mL streptomycin in a T-75 cell culture flask in a 37 °C, 5% CO₂ humidified incubator for 30 min to minimize the thermal and alkaline effects of the medium on the cells.
      NOTE: Glioblastoma was chosen as a type of solid cancer because it has aggressive characteristics in a hypoxic environment. Other various types of cancers can be applied to this model.
   2. For human umbilical vein endothelial cells (HUVECs), place 12 mL of endothelial cell growth medium in a T-75 cell culture flask in a 5% CO₂ humidified incubator at 37 °C for 30 min.
      NOTE: HUVECs were chosen because it is one of the most representative endothelial cell lines. Various types of stromal cells can also be applied to this model.
2. Rapid thawing of cryopreserved cancer cells and stromal cells and their maintenance
   1. Move cryovials containing 5 x 10⁵ U-87 MG cells and HUVECs from the liquid nitrogen container to a laminar flow cabinet. Immediately loosen and retighten the cap to release the internal pressure.
   2. Gently place the cryopreserved cells in a water bath at 37 °C for 2 min, keeping the cap out of the water. Rinse the vials with 70% ethanol under laminar flow to prevent contamination.
   3. Transfer the thawed cells to the flasks containing the prepared cell culture media described in step 2.1 and place the cell-containing flasks in a 5% CO₂ humidified incubator at 37 °C for cell recovery.
   4. Refresh the cell culture media every 2 days and maintain the cell growth.
   5. After 24 h of thawing, replace the cell culture media to avoid cytotoxicity of dimethyl sulfoxide (DMSO), which was used for cell freezing. Use HUVECs, which has undergone less than 6 passages.

3. Preparation of collagen pre-gel solution

1. Solubilization of collagen sponge with 0.1 N hydrochloric acid (HCl)
   1. Prepare a solution of 0.1 N HCl and filter it with a 0.2 µm syringe filter.
   2. For 3 mL of a 1% (w/v) neutralized collagen pre-gel solution, prepare collagen sponges cut into 5 x 5 mm² pieces and weighing 30 mg.
   3. Transfer the cut collagen pieces to a sterile 10 mL glass vial.
      NOTE: Prepare 1.5 times volume of the required collagen hydrogel, considering the loss of the hydrogel due to the sticky characteristic of the collagen solution.
   4. Add 2.4 mL of 0.1 N HCl into the collagen-containing glass vial and incubate it on the rocker at 15 rpm and 4 °C for 3 days.
      NOTE: The volume of the 0.1 N HCl solution was four-fifths of the final volume of required collagen hydrogel. In this case, 3 mL of collagen was prepared.
   5. After digestion, sieve the undigested collagen particles using a 40 µm cell strainer. Store the acidic collagen solution at 4 °C and use within 7 days.
2. pH adjustment for 1% neutralized collagen pre-gel solution
   1. Centrifuge the acidic collagen solution at 1224 x g for 5 min at 4 °C.
   2. Add 30 µL of phenol red solution as a pH indicator to a final concentration of 1% (v/v) and 300 µL of 10x phosphate-buffered saline (PBS) buffer to a final concentration of 10% (v/v) in the collagen pre-gel solution.
   3. Neutralize the pH to 7 with 1 N sodium hydroxide (NaOH), verifying the color change.
      NOTE: Based on the formula, moles H⁺ = molarity H⁺ x volume H⁺ = moles OH^-= molarity OH^- x volume OH^-, add 240 µL of NaOH.
   4. Add distilled water to obtain a total volume of 3 mL.
   5. After pH adjustment, store the 1% (w/v) neutralized collagen pre-gel solution at 4 °C and use within 3 days.
      NOTE: To precheck the gelation of the neutralized collagen pre-gel solution, make 50 µL collagen droplets on a small dish using a positive displacement pipette and incubate them in a 37 °C incubator for 1 h. Refer to the following three methods to verify the cross-linking of collagen droplets.
   6. Check whether the color of collagen has changed into opaque white from transparent color.
   7. Tilt the container and check whether the collagen is adhered to the bottom of the container.
   8. Pour 1x PBS on the droplets and check whether the collagen construct is not broken in the solution.

4. 3D printing of gas-permeable barrier

1. 3D printing of a sacrificial poly (ethylene-vinyl acetate) (PEVA) mold
   1. Generate the 3D geometry of the sacrificial PEVA mold defined in step 1 using a 3D CAD software (Figure 3A).
      NOTE: The 3D geometry and detailed model scale including dimension, units, and line types were shown in Figure 2A.
   2. Convert the 3D CAD file into an STL file format by clicking on File | Save-File type as STL. Also, click on Option | Output form as ASCII for G-code generation.
   3. Click on File | Open STL file and select the saved STL file to import the generated STL file. Click on Slice model of STL-CAD exchanger to automatically generate the G-code of the sacrificial PEVA mold (Figure 3B, C).
      NOTE: The printing path is generated with the connection of intersected points between the fundamental figure of the STL file and the slicing plane (i.e., layer). Basically, the fundamental figure of a fragment in an STL file is a triangle that contains the 3D coordinates. After the intersected points between the triangle and the layer are obtained, a G-code for printing is generated by connecting each point without an overlapped path on a layer¹⁸. Any G-code generation algorithm on board software can be used to generate printing paths for the chip fabrication.
   4. Prepare a sterile adhesive and hydrophilic histology slide.
      NOTE: The hydrophilic slide glass is critical for the permanent bonding of polydimethylsiloxane (PDMS) on the glass and the adhesion of the collagen constructs encapsulating cancer cells and stromal cells.
   5. Print the sacrificial PEVA mold on the slide with a 50 G precision nozzle at a pneumatic pressure of 500 kPa at 110 °C.
      NOTE: The line width is affected by the feed rate, nozzle gauge, and temperature of the material. The 50 G nozzle was used and a feed rate of 400 was applied to generate 500 µm line width for the sacrificial wall. The nozzle gauge, pneumatic pressure, and feed rate are defined with practical results¹⁹. The sacrificial wall needs to be sufficiently thick to hold the PDMS solution, which is the next fabrication step.
2. Casting of polydimethylsiloxane (PDMS) barrier
   1. Mix 6 mL PDMS base elastomer and 0.6 mL curing agent homogenously over 5 min in a plastic reservoir. This can fabricate 6 hypoxic cancer-on-chips, considering the loss due to the sticky characteristic of PDMS.
   2. Load the blended PDMS solution into a 10 mL disposable syringe and fit the syringe head with a 20 G plastic tapered dispense tip.
   3. Fill the sacrificial PEVA mold with the blended PDMS solution in the syringe. The blended PDMS will fill the sacrificial PEVA mold with a convex surface. The height of the PDMS barrier will be higher than that of the PEVA mold.
   4. Cure the PDMS barrier in an oven at 40 °C for over 36 h to avoid the melting of PEVA. Do not increase the temperature to over 88 °C, which is the melting temperature of PEVA.
   5. Detach the sacrificial PEVA mold with a pair of precision tweezers and sterilize the gas-permeable barrier at 120 °C in an autoclave.

5. Preparation of cell-encapsulated collagen bio-inks

1. Detachment of the prepared cancer cells and stromal cells
   NOTE: Considering cell viability, the entire printing process should be completed as soon as possible after detaching the cells.
   1. Wash cancer and stromal cells with 10 mL of 1x PBS using a serological pipette; treat with 2 mL of 0.25% trypsin-ethylenediaminetetraacetic acid (EDTA) using a pipette and incubate them for 3 min at 37 °C.
   2. Neutralize the trypsinized cells with 3 mL of cell culture media; collect the suspensions of cells into 15 mL conical tubes and centrifuge at 516 x g for 5 min at 20 °C.
   3. Aspirate the supernatant slowly; resuspend the cell pellets in 5 mL cell culture media and count the number of cells using a hemocytometer.
   4. Transfer 5 x 10⁶ cells of each cell type into new 15 mL conical tubes and centrifuge them at 516 x g for 5 min at 20 °C.
   5. Aspirate the supernatant off and place it on wet ice.
2. Mixing of each cell type with the 1% neutralized collagen pre-gel solution
   NOTE: To avoid thermal solidification of the 1% neutralized collagen pre-gel solution, this process should be performed on wet ice.
   1. Resuspend each type of cell pellet collected in step 5.1.4 with 20 µL of cell culture media each.
   2. Add 1 mL of the 1% neutralized collagen pre-gel solution into each of the resuspended cell suspensions and mix them homogenously using a positive displacement pipette. The final concentration of each cell type will be 5 x 10⁶ cells/mL.
   3. Transfer the cell-encapsulated collagen bioinks into 3 mL disposable syringes using a positive disposable pipette and store the syringes at 4 °C until 3D cell-printing.

6. 3D cell-printing of cancer-stroma concentric rings

1. 3D cell-printing of collagen bioinks encapsulating cancer cells and stromal cells
   1. Generate the 3D geometry of the cancer-stroma concentric rings defined in step 1.2 using a 3D CAD software.
      NOTE: The dimensions of the cancer stroma concentric rings are defined via simulated parameters. The final dimension parameter dimensions are shown in Figure 3A.
   2. Convert the 3D CAD file into an STL file format and generate a G-code of the cancer-stroma concentric rings using a STL-CAD exchanger.
      NOTE: Refer to the note in step 4.1.2 for the G-code generation algorithm.
   3. Load the cell-encapsulated collagen bioinks contained in 3 mL disposable syringes to the head of the 3D printer and set the temperature of the head and plate to 15 °C.
      NOTE: If the temperature of the head and plate of the printer reaches over 37 °C, the bioink gets cross-linked and no longer prints.
   4. Load the generated printing path on the control software of the 3D printer.
   5. By clicking on the Start button, print the collagen bioinks encapsulating cancer cells and stromal cells on the gas-permeable barrier following the loaded G-code with an 18 G plastic needle at pneumatic pressure of approximately 20 kPa at 15 °C.
   6. At the end of every printing operation, manually place a sterilized 22 mm x 50 mm glass cover on top of the gas-permeable barrier to generate the hypoxic gradient.
      NOTE: Compare two groups depending on the presence of glass cover (GR+) and absence (GR-) of that to verify the generation of the hypoxic gradient.
   7. After generating three hypoxic cancer-on-chips, transfer the chips to an incubator at 37 °C for 1 h to cross-link the collagen bioinks.
2. Completion of the fabrication process and maintenance of the hypoxic cancer-on-a-chip
   1. After completion of all 3D cell-printing processes of the hypoxic cancer-on-a-chip, gently rub the cover glasses on top of the gas-permeable barriers with the cell-scrapper for tight bonding (Figure 4A,B).
      NOTE: The cover glass and the gas-permeable barrier are assembled via hydrophobic bonding without chemical glues, simply scraping the bonded part between the cover glass and the PDMS barrier.
   2. Introduce 1.5 mL of endothelial cell growth medium to each chip. To avoid detachment of the cancer construct, introduce cell culture medium from one side of the chip. Tilt the chip to allow the cell culture media to flow using a pipette.
   3. Refresh the cell culture media every day for a week. Use a pipette to aspirate the cell culture medium; do not use a pressure pump.

7. Evaluation of post-printing cell viability

1. Preparation of samples and treatment with calcein AM and EthD-1 solution
   1. Warm 1x PBS in a water bath at 37 °C.
   2. Prepare the assay solution by adding 0.75 µL of calcein acetoxymethyl (calcein AM) and 3 µL of ethidium homodimer (EthD-1) to 1.5 mL pre-warmed PBS.
   3. Carefully aspirate all media from the chip using a pipette.
   4. Wash the cancer construct with prewarmed PBS. Fill 1.5 mL PBS into the chip using a pipette and let it stand for 10 min at room temperature. To avoid deformation of the cancer construct, introduce 1x PBS from one side of the chips and tilt the chips to allow 1x PBS to flow.
   5. Aspirate the PBS from the chip; treat the 1.5 mL assay solution and incubate the chip at 37 °C for 20 min using a foil to protect from light. Use a pipette to aspirate 1x PBS; do not use a suction pump.
2. Imaging of the cell viability using a fluorescence microscope
   1. View and capture the labeled cells using a fluorescence microscope (Figure 4C).
      NOTE: Calcein AM marks live cells with green fluorescence (wavelength ~488 nm). EthD-1 represents the signal of dead cells with red fluorescence (wavelength ~594 nm).
   2. Count the number of live and dead cells using imaging software, an open-source image-processing program, and calculate viability with the numbers .

8. Immunofluorescence to validate the formation of central hypoxia and its effect on cancer malignancy

1. Fixation, permeabilization, and blocking of the cancer construct
   1. Prepare 1x PBS, 4% paraformaldehyde (PFA), 0.1% (v/v) Triton X-100, and 2% (w/v) bovine serum albumin (BSA) at room temperature.
   2. Carefully aspirate all the media from the chip using a pipette and rinse the chip three times with 1x PBS. To avoid deformation of the cancer construct, introduce 1x PBS from one side of the chips and tilt the chips to allow 1x PBS to flow. Between each washing step, let the chip stand with 1x PBS for 5 min to remove residual solutions.
      NOTE: 1x PBS was aspirated using a pipette, not a pressure pump.
   3. Add 500 µL of 4% PFA to the cancer construct on the chip using a pipette; leave it for 15 min and wash three times with 1x PBS to fix the cells in the cancer construct.
   4. Treat cancer construct with 500 µL of 0.1% Triton X-100 using a pipette at room temperature for 5 min and wash three times with 1x PBS to solubilize and permeabilize the cell membrane.
   5. Treat cancer construct with 500 µL of 2% BSA using a pipette at room temperature for 1 h to block reactive epitopes.
      NOTE: Cover the chip with paraffin film to prevent evaporation.
   6. After 1 h, wash the chip three times with 1x PBS.
2. Treatment with primary antibody, secondary antibody, and DAPI and imaging of the structure using a confocal microscope.
   1. Prepare isotype control antibodies and the cocktail of primary antibodies by diluting the antibodies in 1x PBS to each desired working concentration.
      NOTE: The specific details of the antibodies are listed in the Table of Materials. The same working concentrations of isotype control antibodies as the primary antibodies should be used.
   2. Carefully aspirate all 1x PBS from the chip using a pipette and treat the chip with 200 µL primary antibody solution at 4 °C overnight. Cover the chips with paraffin film to prevent evaporation.
   3. Aspirate the primary antibody solution and wash the chip three times with 1x PBS.
   4. Dilute secondary antibodies and DAPI in 1x PBS to the desired working concentration.
      NOTE: A Green fluorescence-conjugated secondary antibody is used in this case at a ratio of 1:200. DAPI was used at a ratio of 1:1000.
   5. Carefully aspirate all 1x PBS from the chip using a pipette and treat the chip with 200 µL secondary antibody-DAPI solution at 4 °C for 3 h. Cover the chip with paraffin film to prevent evaporation and then wrap it with aluminum foil to prevent photobleaching.
   6. Aspirate the secondary antibody-DAPI solution and wash the chip three times with 1x PBS.
   7. After finishing the staining step, transfer the cancer construct to a confocal dish by gently gripping with forceps.
   8. Visualize and capture the labeled cells using a confocal microscope (Figure 5).
      NOTE: The wavelength of the confocal microscope was adjusted, depending on the type of the fluorescent markers. The specific details of the antibodies are listed in the Table of Materials. To efficiently detect the cell position, it would be better to observe the DAPI stained nuclei of the construct at first. The detection excitation/emission wavelengths of the fluorescent signals were 358/461 nm (DAPI, Blue), 494/517 nm (Green), and 590/617 nm (Red). The magnifications were 4x, 10x, and 20x, adjusted from the lowest to the highest.

9. Statistical analysis

1. Cell counting with image processing program
   1. Run an image processing program to count the number of live and dead cells.
   2. Open the fluorescent image files. Click on File | Open and import the TIFF images.
   3. Convert the images to 16-bit grayscale images. Click on Image | Type | 16-bit Grayscale.
   4. Adjust the threshold by clicking on Image | Adjust | Threshold and then select the color of the cells to be black.
   5. Cut merged cells apart by clicking on Process | Binary | Watershed for precise cell counting.
   6. Count the number of cells by clicking on Analyze and then on Analyze Particles three times; calculate the average and present the data as the mean ± standard error.
      NOTE: Immunofluorescence markers were analyzed by comparing the fluorescence intensity.

Results

The hypoxic cancer-on-a-chip was developed using computer-aided 3D cell-printing technology to recapitulate hypoxia and cancer-related pathology (Figure 1). Oxygen transportation and consumption were simulated using the 3D geometry model. The chip was designed in the form of concentric rings to mimic the radial oxygen diffusion and depletion, in cancer tissues (Figure 2A). After defining the control volume of a space where oxygen...

Discussion

In this study, we describe the fabrication process of a hypoxic cancer-on-a-chip based on 3D cell-printing technology. The formation of the hypoxic gradient in the designed chip was predicted through computer simulations. The environment that can induce a heterogeneous hypoxic gradient was reproduced via a simple strategy combining the 3D-printed gas-permeable barrier and the glass cover. The hypoxia-related pathological features of glioblastoma, including pseudopalisade and a small population of cancer stem cells, were ...

Materials

Name	Company	Catalog Number	Comments
Cells
Human umbilical vein endothelial cells	Promocell	C-12200
U-87 MG cells	ATCC	ATCC HTB-14
Disposable
0.2 μm syringe filter	Sartorius	16534-K
10 mL disposable syringe	Jung Rim	10ml 21G32
10 mL glass vial	Hubena	A0039
10 mL Serological pipette tip	SPL lifescience	91010
15 mL conical tube	SPL lifescience	50015
18G plastic needle	Musashi engineering	PN-18G-B
20G plastic tapered dispense tip	Musashi engineering	TPND-20G-U
22x50 glass cover	MARIENFIELD	0101142
25 mL Serological pipette tip	SPL lifescience	90125
3 mL disposable syringes	HENKE-JET	4020-X00V0
40 µm cell strainer	Falcon	352360
5 mL Serological pipette tip	SPL lifescience	91005
50 mL conical tube	SPL lifescience	50050
50 mL Serological pipette tip	SPL lifescience	90150
50N precision nozzle	Musashi engineering	HN-0.5ND
Aluminum foil	SINKWANG
Capillary tips	Gilson	CP1000
Cell-scrapper	SPL lifescience	90030
Confocal dish	SPL lifescience	200350
Parafilm	Bemis	PM996
Pre-coated histology slide	MATSUNAMI	MAS-11
Reservoir	SPL lifescience	23050
T-75 cell culture flask	SPL lifescience	70075
Equipment
3DX printer	T&R Biofab
Autoclave	JEIOTECH	AC-12
Centrifuger	Cyrozen	1580MGR
Confocal laser microscopy	Olympus Life Science	FV 1000
Fluorescence microscope	FISHER SCEINTIFIC	O221S366
Forcep	Korea Ace Scientific	HC.203-30
Hand tally counter	KTRIO
Hemocytometer	MARIENFIELD	0650030
Incubator	Panasonic	MCO-170AIC
Laminar flow cabinet	DAECHUNG SCIENCE	CB-BMMS C-001
Metal syringe	IWASHITA engineering	SUS BARREL 10CC
Operating Scissors	Hirose	HC.13-122
Oven	JEIOTECH	OF-12, H070023
Positive displacement pipette	GILSON	NJ05652
Refrigerator	SAMSUNG	CRFD-1141
Voltex Mixer	DAIHAN scientific	VM-10
Water bath	DAIHAN SCIENTIFIC	WB-11
Water purifier	WASSER LAB	DI-GR
Materials
0.25 % Trypsin-EDTA	Gibco	25200-072
10x PBS	Intron	IBS-BP007a
4% Paraformaldehyde	Biosesang
70% Ethanol	Daejung	4018-4410
Anti-CD31 antibody	Abcam	ab28364
Anti-HIF-1 alpha antibody	Abcam	ab16066
Anti-SHMT2/SHMT antibody	Abcam	ab88664
Anti-SOX2 antibody	Abcam	ab75485
Bovine Serum Albumin	Thermo scientific	J10857-22
Collagen from porcine skin	Dalim tissen	PC-001-1g
DAPI (4',6-Diamidino-2-Phenylindole, Dihydrochloride)	Thermofisher	D1306
Endothelial Cell Growth Medium-2	Promocell	C22011
Fetal bovine serum	Gibco	12483-020
Goat anti-Mouse IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 488	Theromofisher	A-11001
Goat anti-Rabbit IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 594	Theromofisher	A-11012
High-glucose Dulbecco’s Modified Eagle Medium(DMEM)	Hyclone	SH30243-0
Hydrochloric acid	Sigma-Aldrich	311413-100ML
Live/dead assay kit	Invitrogen	L3224
Mouse IgG1, kappa monoclonal [15-6E10A7] - Isotype Control	Abcam	ab170190
Penicillin/streptomycin	Gibco	15140-122
Phenol red solution	Sigma-Aldrich	P0290-100ML
Poly(ethylene-vinyl acetate)	Poly science	06108-500
Polydimethylsiloxane	Dowhitech	sylgard 184
Rabbit IgG, polyclonal - Isotype Control	Abcam	ab37415
Sodium hydroxide solution	Samchun	S0610
Triton X-100	Biosesang	TRI020-500-50
Trypan Blue	Sigma-Aldrich	T8154
Software
COMSOL Multiphysics 3.5a	COMSOL AB
IMS beamer			in-house software
SolidWorks Package	Dassault Systems SolidWorks Corporation