JoVE Logo
Faculty Resource Center

Sign In

Characterization of a Pathogenic Escherichia coli Strain Derived from Oreochromis spp. Farms Using Whole-Genome Sequencing

DOI :

10.3791/64404-v

December 23rd, 2022

December 23rd, 2022

1,599 Views

1Unidad de Investigaciones en Salud Pública “Dra. Kaethe Willms”, Facultad de Ciencias Químico Biológicas, Universidad Autónoma de Sinaloa, 2Centro de Investigación en Alimentación y Desarrollo, A. C. (CIAD), Unidad Mazatlán en Acuicultura y Manejo Ambiental

The feasibility of whole-genome sequencing (WGS) strategies using benchtop instruments has simplified the genome interrogation of every microbe of public health relevance in a lab setting. A methodological adaptation of the workflow for bacterial WGS is described and a bioinformatics pipeline for analysis is also presented.

-- Views

Related Videos

article

Monitoring Spatial Segregation in Surface Colonizing Microbial Populations

article

Culture and Assay of Large-Scale Mixed-Stage Caenorhabditis elegans Populations

article

Reverse Genetics to Engineer Positive-Sense RNA Virus Variants

article

Author Spotlight: RNAi Inheritance and ChIP in C. elegans

article

Exercise Test for Evaluation of the Functional Efficacy of the Pig Cardiovascular System

article

Getting an A with the 3Cs: Chromosome Conformation Capture for Undergraduates

article

Non-Aqueous Isolation and Enrichment of Glandular Capitate Stalked and Sessile Trichomes from Cannabis sativa

article

Author Spotlight: PGC Cryopreservation – An Alternative Approach Towards Long-Term Preservation of Drosophila Strains

article

Collection of F1 Generation Caenorhabditis elegans for Chromatin Immunoprecipitation (ChIP)

article

Formaldehyde Crosslinking of the F1 Generation of Caenorhabditis elegans for ChIP

JoVE Logo

Privacy

Terms of Use

Policies

Research

Education

ABOUT JoVE

Copyright © 2024 MyJoVE Corporation. All rights reserved