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In This Article

  • Summary
  • Abstract
  • Introduction
  • Protocol
  • Representative Results
  • Discussion
  • Acknowledgements
  • Materials
  • References
  • Reprints and Permissions

Summary

This protocol presents a comprehensive and efficient method for producing kidney organoids from induced pluripotent stem cells (iPSCs) using suspension culture conditions. The primary emphasis of this study lies in the determination of the initial cell density and the WNT agonist concentration, thereby benefiting investigators interested in kidney organoid research.

Abstract

Kidney organoids can be generated from induced pluripotent stem cells (iPSCs) through various approaches. These organoids hold great promise for disease modeling, drug screening, and potential therapeutic applications. This article presents a step-by-step procedure to create kidney organoids from iPSCs, starting from the posterior primitive streak (PS) to the intermediate mesoderm (IM). The approach relies on the APEL 2 medium, which is a defined, animal component-free medium. It is supplemented with a high concentration of WNT agonist (CHIR99021) for a duration of 4 days, followed by fibroblast growth factor 9 (FGF9)/heparin and a low concentration of CHIR99021 for an additional 3 days. During this process, emphasis is given to selecting the optimal cell density and CHIR99021 concentration at the start of iPSCs, as these factors are critical for successful kidney organoid generation. An important aspect of this protocol is the suspension culture in a low adherent plate, allowing the IM to gradually develop into nephron structures, encompassing glomerular, proximal tubular, and distal tubular structures, all presented in a visually comprehensible format. Overall, this detailed protocol offers an efficient and specific technique to produce kidney organoids from diverse iPSCs, ensuring successful and consistent results.

Introduction

The kidney plays a critical role in maintaining physiological homeostasis, depending on its functional unit. Nephrons, which excrete waste products, can regulate the composition of body fluids. Chronic kidney disease (CKD), caused by hereditary mutations or other high-risk factors, will eventually progress to end-stage kidney disease (ESKD)1,2. ESKD is apparently due to the limited regeneration capacity of nephrons. Thus, renal replacement therapy is required. Directed differentiation of human iPSCs enables the in vitro generation of patient-specific 3D kidney organoids, which can be used to study kid....

Protocol

The iPSCs used for the present study were obtained from a commercial source. The cells were maintained with mTeSR medium on commercially available basement membrane matrix-coated plates (see Table of Materials). Table 1 contains all the medium compositions utilized in the study.

1. Plating iPSCs for differentiation and inducing posterior primitive streak (PS)

  1. Wash iPSCs on the membrane matrix-coated 6-well plate with 2 mL DPBS. Asp.......

Representative Results

The production of IM is achieved by activating canonical WNT signaling using the GSK3 inhibitor CHIR99021, followed by FGF9/heparin. From Day 0 to Day 4, iPSCs rapidly expand and take on rhomboid or triangular shapes. The confluence reaches 90%-100% and accumulates evenly until Day 7. Upon suspension culture, the aggregates spontaneously form nephron structures after dissociating on Day 7. The kidney organoids created through suspension culture display tubular-like structures and are easily observed in bright field image.......

Discussion

A detailed protocol has been described for generating kidney organoids from iPSCs, involving minor modifications to the basal medium, initial cell density, and concentration of CHIR99021. In various experiments, the critical factors for successful kidney organoid generation were found to be the initial differentiation of the intermediate mesoderm (IM) and the cell state on Day 7. Moreover, different iPSC lines exhibited variations in cell proliferation and differentiation potential, resulting in varying optimal cell dens.......

Acknowledgements

We are extremely grateful to all Mao and Hu Lab members, past and present, for the interesting discussions and great contributions to the project. We thank the National Clinical Research Center for Child Health for the great support. This study was financially supported by the National Natural Science Foundation of China (U20A20351 to Jianhua Mao, 82200784 to Lidan Hu), the Natural Science Foundation of Zhejiang Province of China (No. LQ22C070004 to Lidan Hu), and the Natural Science Foundation of Jiangsu Province (Grants No. BK20210150 to Gang Wang).

....

Materials

NameCompanyCatalog NumberComments
96 Well Cell Culture Plate, Flat-BottomNESTCat #701003
AccutaseSTEMCELL TechnologiesCat #o7920
Antibodies
Benzyl alcoholSigma-AldrichCat #100-51-6
Benzyl benzoateSigma-AldrichCat #120-51-4
Biological Safety CabinetHaierCat #HR40 figure-materials-705 A2
Biotin anti-human LTL (1:300)Vector LaboratoriesCat #B-1325
Blood mononuclear cells hiPS-B1 (iPSc, female)N/AN/A
Carbon dioxide level shakerHAMANYCat #C0-06UC6
Chemicals, peptides, and recombinant proteins
CHIR99021 (Wnt pathway activator)STEMCELL TechnologiesCat #72054
Costar Multiple 6 Well Cell Culture PlateCorningCat #3516
Costar Ultra-Low Attachment 6 Well PlateCorningCat #3471
CryoStor CS10STEMCELL TechnologiesCat #07930
DAPI stain SolutionCoolaberCat #SL7102
Dextran, Alexa Fluor 647Thermo SCIENTIFICCat #D22914
DMEM/F-12 HEPES-freeServicebioCat #G4610
Donkey Anti-Sheep IgG H&L (Alexa Fluor 647)AbcamCat #ab150179
Donkey serum stosteMeilunbioCat #MB4516-1
D-PBS (without calcium, magnesium, phenol red)Solarbio Life ScienceCat #D1040
Dry Bath IncubatorShanghai JingxinCat #JX-10
Dylight 488-Goat Anti-Mouse IgG (1:400)EarthoxCat #E032210
Dylight 488-Goat Anti-Rabbit IgG (1:400)EarthoxCat #E032220
Dylight 549-Goat Anti-Mouse IgG (1:400)EarthoxCat #E032310
Dylight 549-Goat Anti-Rabbit IgG (1:400)EarthoxCat #E032320
Dylight 649-Goat Anti-Rabbit IgG (1:400)EarthoxCat #E032620
Experimental models: Cell Lines
Forma Steri-Cycle CO2 IncubatorThermo SCIENTIFICCat #370
Geltre LDEV-FreeGibcoCat #A1413202
Glass Bottom Culture DishesNESTCat #801002
Goat anti-human CUBN (1:300)Santa Cruz BiotechnologyCat #sc-20607
Heparin Solution (Cell culture supplement)STEMCELL TechnologiesCat #07980
Human Recombinant FGF-9STEMCELL TechnologiesCat #78161
Inverted MicroscopeOLYMPUSCat #CKX53
Laser Scanning Confocal MicroscopeOLYMPUSCat #FV3000
Methyl celluloseSigma-AldrichCat #M7027
Micro CentrifugeHENGNUOCat #2-4B
Mouse anti-human CD31 (1:300)BD BiosciencesCat #555444
Mouse anti-human ECAD (1:300)BD BiosciencesCat #610182
Mouse anti-human Integrin beta 1 (1:300)AbcamCat #ab30394
Mouse anti-human MEIS 1/2/3 (1:300)Thermo SCIENTIFICCat #39795
Mowiol 4-88 (Polyvinylalcohol 4-88)Sigma-AldrichCat #81381
mTeSR1 5X SupplementSTEMCELL TechnologiesCat #85852
mTeSR1 Basal MediumSTEMCELL TechnologiesCat #85851
Nunc CryoTube VialsThermo SCIENTIFICCat #377267
Others
Rabbit anti-human GATA3 (1:300)Cell Signaling TechnologyCat #5852S
Rabbit anti-human LRP2 (1:300)Sapphire BioscienceCat #NBP2-39033
Rabbit anti-human Synaptopodin (1:300)AbcamCat #ab224491
Rabbit anti-human WT1 (1:300)AbcamCat #ab89901
Rabbit anti-mouse PDGFR (1:300)AbcamCat #ab32570
Recombinant Human Serum Albumin (rHSA)YEASENCat #20901ES03
Sheep anti-human NPHS1 (1:300)R&D SystemsCat #AF4269
STEMdiff APEL 2 MediumSTEMCELL TechnologiesCat #05275
Streptavidin Cy3 (1:400)Gene TexCat #GTX85902
Versene (1X)GibcoCat #15040066
Y-27632 (Dihydrochloride)STEMCELL TechnologiesCat #72304

References

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Induced Pluripotent Stem CellsKidney OrganoidsSuspension CultureAPEL 2 MediumCHIR99021FGF9Cell DensityDifferentiationDisease ModelingDrug ScreeningRegenerative Medicine

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