The authors would like to recognize the members of the Mattheyses laboratory for fruitful discussions and critiques. We acknowledge funding to A.L.M. from NSF CAREER 1832100 and NIH R01GM131099.

1. TGT oligonucleotide preparation
NOTE: The details of oligonucleotide probe synthesis are outlined here. Please note some modifications and purification steps can be outsourced for custom synthesis.
<ol>
	<li>Activate the primary amine of the cyclo[Arg-Gly-Asp-D-Phe-Lys(PEG-PEG)] peptide with the azide-NHS linker as described by Zhang et al22 by mixing in a 1:1.5 ratio (100:150 nmoles) in a final volume of 10 &#181;L dimethylformamide. Add 0.1 &#181;L of the organic base triethylamine and incubate for 12 h at 4&#176; C.</li>
	<li>Purify the product by reverse phase HPLC using 0.1 M TEAA (solvent A) and 100% acetonitrile (solvent B) with a flow rate of 1mL/ min and the initial condition of 10% solvent B set at a gradient of 0.5%/min. Combine the eluted peaks (absorbance at 203 nm) and verify by MALDI-TOF mass spectrometry. The product is cRGDfK-azide.</li>
	<li>To generate the TGT top strand, combine cRGDfK-azide and alkyne-21-BHQ2 oligonucleotide (TGT top strand: 5Hexynyl/GTGAAATACCGCACAGATGCG/3BHQ_2) in a 2:1 ratio (&#8128;200 &#181;M: 100 &#181;M) in 100 &#181;L of 1x Phosphate Buffered Saline (PBS) with 5 mM sodium ascorbate and 0.1 &#181;M preformed Cu-THPTA. Allow the reaction to proceed for a minimum of 4 h at room temperature (RT) or overnight at 4 &#176;C.</li>
	<li>Process the mixture through the P2 desalting gel to remove excess dye, by-products, organic solvent, and unreacted reagents. Prepare the centrifuge column with 650 &#181;L of pre-hydrated P2 gel by spinning it down at 18,000 x g for 1 min. Discard the flow-through liquid and add the reaction mixture. Spin again at 18,000 x g for 1 min and collect the flow-through. Bring the reaction mixture to a final volume of 300 &#181;L with ultrapure water. 
	NOTE: Pre-hydrate the P2 gel with water for 6 h.</li>
	<li>Purify the desalted reaction mixture by reverse-phase HPLC. The organic solvents used for this purification include 0.1 M TEAA in H2O (solvent A) and 100% MeCN (solvent B, or the mobile phase).
	<ol>
		<li>Prior to injecting the mixture, equilibrate the column with an initial condition of 10% Solvent B with a gradient of 1%/min. Adjust the flow rate to 1 mL/min. Inject the reaction mixture into the HPLC loop with a 500 &#181;L injection needle.</li>
		<li>Collect the product by visualizing the peak absorption at 260 nm for the DNA and 560 nm for the BHQ2 quencher. Dry the eluted product overnight in a vacuum centrifugal concentrator.</li>
	</ol>
	</li>
	<li>Employ nucleophilic substitution to couple TGT bottom strand to Cy3B-NHS ester as described in Ma et. al25. Mix 100 &#181;M of the 56 pN TGT bottom strand (5Biosg/TTTTTT/iUniAmM/CGCATCTGTGCGGTATTTCACTTT) with 50 &#181;g of Cy3B-NHS ester pre-dissolved in 10 &#181;L of DMSO. Adjust the pH of this mixture to 9 with 0.1 M sodium bicarbonate and bring the final volume to 100 &#181;L with 1x PBS. Incubate the reaction mixture overnight at RT.</li>
	<li>Purify the mixture sequentially using P2 gel filtration and reverse-phase HPLC to separate unreacted reagents, salts, and organic solvents (described in steps 1.4 and 1.5).</li>
	<li>Estimate the concentration of the purified oligonucleotide-dye conjugates by recording their absorbance at 260 nm using a spectrophotometer.</li>
	<li>Characterize the purified products by MALDI-TOF mass spectrometry. Dissolve excess 3-hydroxypicolinic acid into TA50 solvent (50:50 v/v acetonitrile and 0.1% TFA in ddH2O) to prepare the fresh MALDI matrix. Estimated and measured molecular weights for the labeled products are: cRGDfK-1-BHQ2 - 8157.9 (calculated), 8160.1 (found); Cy3B labeled 56 pN TGT - 10272.7 (calculated), 10295.8 (found).</li>
	<li>Dissolve the top and the bottom strands separately in nuclease-free water at a concentration between 30-50 &#181;M. Use DNase-free pipette tips to avoid stock contamination. Store at 4 &#176;C for short-term applications or -20 &#176;C for long-term applications. The stability of oligonucleotides is not affected by repeated freeze-thaw cycles.</li>
</ol>
2. Surface preparation
Day 1:
<ol>
	<li>Place 25 mm glass coverslips (up to 8) into a polytetrafluoroethylene rack. Place the rack in a 50 mL borosilicate beaker containing 40 mL of 200 proof ethanol. Cover the beaker with paraffin film to avoid water from entering and sonicate at an operating frequency of 35 kHz for 10-15 min at RT (Figure 1A).</li>
	<li>Fill a 50 mL beaker with 40 mL of Piranha solution freshly prepared by mixing sulfuric acid and hydrogen peroxide in a 3:1 ratio in a pyrex beaker. Stir with a glass pipette. Transfer the coverslip rack into the beaker and incubate for 30 min at RT in the fume hood to etch the coverslip surface (Figure 1B). 
	NOTE: Wear full PPE, including a lab coat, gloves, and goggles, and work in the chemical fume hood. Add hydrogen peroxide to the acid slowly to prevent overheating of the solution.</li>
	<li>After etching, use tweezers to transfer the coverslip rack to a beaker with ultrapure water. Repeat this step six times at 15 s intervals to completely neutralize the acid (Figure 1C). 
	NOTE: Leave the Piranha solution in the chemical fume hood overnight before discarding it into the acid waste container.</li>
	<li>Visually inspect the coverslips to ensure the surfaces look clean with no patterns or dust particles on the glass surface. Repeat steps 2.1-2.4 if patterns or dust are detected. 
	NOTE: Test surface hydrophilicity by dipping treated coverslips in water and removing them vertically. Water on treated coverslips recedes as a uniform sheet to form Young&#39;s rings compared to untreated coverslips that form patches.</li>
	<li>Transfer the coverslip rack to a beaker with 200 proof ethanol and wash twice for 15 s to equilibrate surfaces to organic solvent. Transfer the coverslip rack into 200 proof ethanol solution with 3% APTES for 1 h at RT to silanize the coverslips (Figure 1D). Cover the beaker with paraffin film. 
	NOTE: APTES deposition parameters vary depending on the surface cleaning method, solvent water content, APTES concentration, incubation times, and temperature for annealing.</li>
	<li>Immerse the rack in a clean beaker with 200 proof ethanol solution. Repeat this wash three times for 15 s each (Figure 1E).</li>
	<li>Dry the coverslips using nitrogen (N2) gas with low exit pressure. Place the coverslips into a 10 cm polystyrene dish with a piece of paraffin film laid flat inside it. Ensure the coverslips are dry and separated (Figure 1F).</li>
	<li>Add 100 &#181;L of 2 mg/mL NHS-biotin solution in DMSO to four coverslips placed on paraffin film. Set a &#34;sandwich&#34; with the other four coverslips on top (two coverslips facing toward each other with the functionalization solution in between) and incubate the dish overnight at 4 &#176;C (Figure 1G). 
	NOTE: At 4 &#176;C, the NHS reagent is more stable, which facilitates uniform surface functionalization. Additionally, the sandwich conserves reagents. Avoid adding excess solution in the sandwich as it may leak out and cause coverslips to slip.</li>
</ol>
Day 2:
<ol start="9">
	<li>Remove the dish from 4 &#176;C and separate the sandwiched coverslips. Orient the slips in the rack with the coated surface facing each other as shown in Figure 2A. Wash them with 200 proof ethanol solution three times for 15 s each. Dry with N2 gas and place them in a new dish with a paraffin film inside it. 
	NOTE: Orienting the coverslips as indicated helps identify the functionalized surface.</li>
	<li>Wash the coverslips with 1 mL of 1x PBS three times to equilibrate them back to the aqueous phase. Add 800 &#181;L of 0.1% bovine serum albumin (BSA) in 1x PBS (w/v) to each of the coverslips and incubate at RT for 30 min to passivate the surface and block non-specific binding of subsequent functionalization reagents (Figure 2B).</li>
	<li>After incubation, wash the coverslips three times with 1 mL of 1x PBS. Add 800 &#181;L of 1 &#181;g/mL of streptavidin in 1x PBS at RT for 45-60 min to functionalize the coverslips (Figure 2C). 
	NOTE: Retain one coverslip without streptavidin to verify passivation efficiency (optional). Add10 nM biotinylated molecules and image using experimental conditions. This surface intensity should be close to the camera&#39;s dark noise.</li>
	<li>Simultaneously with step 2.11, assemble the TGT probes (top: bottom strand at 1:1 molar ratio) at a final concentration of 50 nM in 100 &#181;L of 1 M NaCl in a PCR tube using a thermocycler. Dissociate strands at 95 &#176;C for 5 min, and gradually anneal by reducing the temperature to 25 &#176;C and maintaining it for 25 min (Figure 2D). Avoid extended exposure of TGT probes to light.</li>
	<li>After streptavidin incubation, use 1x PBS to wash the coverslips three times. Add 100 &#181;L of the pre-assembled TGT probes to four of the coverslips and make sandwiches using the remaining 4 coverslips with the functionalized side facing the probes (eight surfaces require four tubes of hybridized TGT probes). Cover with aluminum foil and incubate for 1 h at RT to allow probe binding to the surface (Figure 2E).</li>
	<li>After incubation, separate the sandwiches and wash the coverslips with 1x PBS three times. The TGT surfaces are now ready for imaging. Carefully assemble the coverslips into precleaned imaging chambers and add 1x PBS to keep the surfaces hydrated (Figure 2F). 
	&#8203;NOTE: Overtightening the chambers will crack the surface. Prevent drying of the surfaces.</li>
</ol>
3. Cell preparation and staining
<ol>
	<li>To investigate the effect of the epidermal growth factor (EGF) stimulation on Cos-7 mechanics, adhesion, and cell spreading, trypsinize Cos-7 cells with 0.05% Trypsin-EDTA for 2 min. Neutralize the trypsin by washing with HBSS and centrifuging at 800 x g for 5 min. Repeat the neutralization step once more.</li>
	<li>Plate cells at a density of 4 x 104 cells on the assembled TGT surfaces in Dulbecco&#39;s Modified Eagle Medium (DMEM) supplemented with 50 ng/mL EGF or DMEM without EGF. Allow the cells to spread for 60 min at 37 &#176;C with 5% CO2 in a cell culture incubator (Figure 3A). 
	NOTE: Cells are incubated in DMEM without serum to avoid stimulation from growth factors. EGF is diluted in 10 mM acetic acid to make a stock of 1 mg/mL. It is used at 50 ng/mL in DMEM for imaging experiments.</li>
	<li>Following incubation, wash the cells three times with 1x PBS and fix with 2 mL of 4% paraformaldehyde for 12 min at RT (Figure 3B). 
	NOTE: All incubation steps are performed on a rotary shaker at ~35 rpm for uniform spreading of the solutions. Protect the TGT surfaces from light by covering them till they are ready for imaging.</li>
	<li>Aspirate the fixative and wash the coverslips five times with 1x PBS at 5 min intervals at RT. Optionally, incubate the coverslips with 50 mM NH4Cl in 1x PBS for 30 min at 37 &#176;C to quench paraformaldehyde-associated autofluorescence and wash three times with 1x PBS at 5 min intervals (Figure 3B).</li>
	<li>Add Buffer A (1x PBS, 5% normal horse serum, 5% normal goat serum, 1% BSA, 0.025% Triton X-100) and incubate for 30 min at 37 &#176;C to block and permeabilize the cells. Wash three times with 1x PBS at 5 min intervals (Figure 3B).</li>
	<li>Place the imaging chambers with coverslips in a humidity container. Dilute the primary anti-paxillin antibody (focal adhesion marker) at 1:250 in blocking buffer (1x PBS, 5% normal horse serum, 5% normal goat serum, 1% BSA, 0.005% Triton x-100). Incubate with 200 &#956;L of primary antibody solution per coverslip for 2 h at 37 &#176;C (Figure 3B). 
	NOTE: Do not let the surfaces dry out.</li>
	<li>Wash the coverslips five times with 1x PBS at 5 min intervals and return them to the humidity container. Label cells simultaneously with a mixture of dye conjugated goat anti-rabbit secondary antibody at 1:800 dilution and dye conjugated phalloidin (actin) at 1:400 dilution in 200 &#956;L of blocking buffer per coverslip. Incubate at 37 &#176;C for 60 min (Figure 3B).</li>
	<li>Wash the surfaces five times with 1x PBS at 5 min intervals and store at 4 &#176;C until ready for imaging (Figure 3B). 
	NOTE: Image samples within 3 days of surface preparation to avoid signal degradation.</li>
</ol>
4. Image acquisition
<ol>
	<li>Use an oil immersion 60x objective with a high numerical aperture (1.49) on an inverted microscope with 488, 561, and 647 TIRF excitation, RICM excitation, a perfect focus system, and a digital camera.
	<ol>
		<li>Add oil to the objective, clean the coverslip bottom of the sample chamber, and place the sample on the stage. Focus on a cell and engage the perfect focus.</li>
	</ol>
	</li>
	<li>Put the microscope into the RICM imaging mode with epifluorescence excitation and a GFP filter cube with the emission filter removed. Align the RICM by closing and centering the epi-illumination aperture diaphragm.</li>
	<li>Put the microscope in TIRF mode with laser excitation and a quad-pass TIRF filter cube. Focus the 488 nm laser to a small spot on the ceiling of the room and increase the angle of incidence until past the critical angle while monitoring fluorescence on the camera in live mode. Observe a sharp reduction in background fluorescence and a single in-focus plane when the critical angle is surpassed. 
	NOTE: TIRF excites a thin region (~100 nm) closest to the sample-coverslip interface highlighting open TGT probes and focal adhesions while eliminating out-of-focus fluorescence from within the cell. If TIRF is not available, epi-fluorescence may be used; however, signal-to-noise ratios will be lower.</li>
	<li>Identify cells for imaging using the &#34;live&#34; mode of the camera using RICM.</li>
	<li>Acquire the RICM image and TIRF images of actin (640 nm ex), integrin tension (561 nm ex), and paxillin (488 nm ex). Obtain images sequentially using an exposure time of 200 ms. 
	NOTE: The exposure time is dependent on many factors, including the objective, laser power, emission filters, and camera sensitivity. The signal should be at least 2x greater than the background. The background is around 1000 AU so the signal should be at least 2000-3000 AU.</li>
	<li>Repeat 4.4-4.5 for at least 30 cells. Change coverslips, focus, and repeat 4.4-4.5.</li>
</ol>
5. Data analysis
NOTE: Perform quantitative image analysis using the Fiji software and the analysis using statistics software.
<ol>
	<li>Open the image set for one cell.</li>
	<li>Create a mask of the cell area (RICM mask) by tracing the boundary of the cell in the RICM image using the ImageJ Freehand selection tool. Save the region of interest (ROI) to the ROI manager (Analyze &#62; Tools &#62; ROI manager) (Figure 4A1,2).</li>
	<li>Pick a representative area outside the cell in the integrin tension image and draw a ROI of at least 200 x 200 pixels. Exclude any other cells or fluorescent debris from the ROI. Measure the background fluorescence in the ROI using the measure tool (Analyze &#62; Measure) (Figure 4A3).</li>
	<li>Subtract the mean background fluorescence obtained in step 5.2 from the tension image (Process &#62; Math &#62; Subtract) (Figure 4A4).</li>
	<li>Use the RICM mask established in step 5.2 to define the tension signal within the cell footprint (ROI manager &#62; Select &#62; Apply mask &#62; Edit &#62; Clear outside) (Figure 4A5).</li>
	<li>Create a threshold mask for the tension image using Huang&#39;s method for auto thresholding (Image &#62; Adjust &#62; Threshold) (Figure 4A6). Ensure that the threshold mask best represents the area for the generated integrin tension. As a rule of thumb, set the threshold to 2x the mean background fluorescence.</li>
	<li>Create a selection of the thresholded tension mask (Edit &#62; Selection &#62; Create) (Figure 4A7).</li>
	<li>Transfer the selected mask onto the tension image generated in step 5.4 and measure the integrated intensity of open probes (ROI manager &#62; Select (Tension Mask) &#62; Analyze &#62; Measure &#62; RawIntDen) (Figure 4C).</li>
	<li>Measure the cell morphometric properties area, circularity, and aspect ratio from the RICM mask (ROI manager &#62; Select (RICM mask) &#62; Apply mask &#62; Analyze &#62; Measure) (Figure 4B).</li>
	<li>Measure the mechanical rupture density, defined as the percent of the cell footprint with ruptured probes by selecting the tension mask image and applying the RICM mask (ROI manager &#62; Select (RICM Mask) &#62; Analyze &#62; Measure &#62; %Area) (Figure 4C).</li>
	<li>Export the measurements for further analysis and visualization into statistics software.</li>
	<li>Repeat 5.1-5.11 for every cell.</li>
</ol>

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Y., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Mechanically+induced+catalytic+amplification+reaction+for+readout+of+receptor-mediated+cellular+forces.">Mechanically induced catalytic amplification reaction for readout of receptor-mediated cellular forces.</a> Angewandte Chemie International Edition. 55 (18), 5488-5492 (2016).</li><li>Wang, X., Ha, T. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Defining+single+molecular+forces+required+to+activate+integrin+and+notch+signaling.">Defining single molecular forces required to activate integrin and notch signaling.</a> Science. 340 (6135), 991-994 (2013).</li><li>Chen, Y., Lee, H., Tong, H., Schwartz, M., Zhu, C. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Force+regulated+conformational+change+of+integrin+&#945;V&#946;3.">Force regulated conformational change of integrin &#945;V&#946;3.</a> Matrix Biology. 60-61, 70-85 (2017).</li><li>Kantlehner, M., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Surface+coating+with+cyclic+RGD+peptides+stimulates+osteoblast+adhesion+and+proliferation+as+well+as+bone+formation.">Surface coating with cyclic RGD peptides stimulates osteoblast adhesion and proliferation as well as bone formation.</a> ChemBioChem. 1 (2), 107-114 (2000).</li><li>Kapp, T. G., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+comprehensive+evaluation+of+the+activity+and+selectivity+profile+of+ligands+for+RGD-binding+integrins.">A comprehensive evaluation of the activity and selectivity profile of ligands for RGD-binding integrins.</a> Scientific Reports. 7, 39805 (2017).</li><li>Kok, R. J., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Preparation+and+functional+evaluation+of+RGD-modified+proteins+as+alpha(v)beta(3)+integrin+directed+therapeutics.">Preparation and functional evaluation of RGD-modified proteins as alpha(v)beta(3) integrin directed therapeutics.</a> Bioconjugate Chemistry. 13 (3), 128-135 (2002).</li><li>Li, I. T. S., Ha, T., Chemla, Y. R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Mapping+cell+surface+adhesion+by+rotation+tracking+and+adhesion+footprinting.">Mapping cell surface adhesion by rotation tracking and adhesion footprinting.</a> Scientific Reports. 7 (1), 44502 (2017).</li><li>Wang, Y., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Force-activatable+biosensor+enables+single+platelet+force+mapping+directly+by+fluorescence+imaging.">Force-activatable biosensor enables single platelet force mapping directly by fluorescence imaging.</a> Biosensors and Bioelectronics. 100, 192-200 (2018).</li><li>Murad, Y., Li, I. T. S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Quantifying+molecular+forces+with+serially+connected+force+sensors.">Quantifying molecular forces with serially connected force sensors.</a> Biophysical Journal. 116 (7), 1282-1291 (2019).</li><li>Yasunaga, A., Murad, Y., Li, I. T. S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Quantifying+molecular+tension-classifications,+interpretations+and+limitations+of+force+sensors.">Quantifying molecular tension-classifications, interpretations and limitations of force sensors.</a> Physical Biology. 17 (1), 011001 (2019).</li><li>Luca, V. C., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Notch-Jagged+complex+structure+implicates+a+catch+bond+in+tuning+ligand+sensitivity.">Notch-Jagged complex structure implicates a catch bond in tuning ligand sensitivity.</a> Science. 355 (6331), 1320-1324 (2017).</li><li>Spillane, K. M., Tolar, P. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=B+cell+antigen+extraction+is+regulated+by+physical+properties+of+antigen-presenting+cells.">B cell antigen extraction is regulated by physical properties of antigen-presenting cells.</a> The Journal of Cell Biology. 216 (1), 217-230 (2017).</li><li>Brockman, J. M., Salaita, K. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Mechanical+proofreading:+a+general+mechanism+to+enhance+the+fidelity+of+information+transfer+between+cells.">Mechanical proofreading: a general mechanism to enhance the fidelity of information transfer between cells.</a> Frontiers in Physics. 7, 14 (2019).</li></ol>

The authors declare no conflicts of interest.

With the detailed step-by-step procedure outlined above, one can prepare TGT surfaces to quantify cell morphology and integrin tension generated by adherent cells during cell attachment and spreading following treatment with EGF. The straightforward probe design and synthesis and surface preparation along with the simple experimental setup provided a stable platform to study the interaction of EGFR and integrins. Overall, the results validate that ligand-dependent activation of EGFR enhances cell spreading, tunes the force-bearing properties of integrin receptors, and promotes focal adhesion organization and maturation. The results obtained using TGT probes support the overarching hypothesis that growth factors, such as EGFR, act as &#39;mechano-organizers&#39;, increasing the amount and spatial organization of integrin tension and regulating the orientation and mechanics of focal adhesions.
Upon application onto the TGT surface, the cells land, attach, and spread as the integrin (&#945;V&#946;3) receptors sense and bind to the cRGDfK ligand. In doing so the TGT probes can be mechanically ruptured, generating fluorescence at the site of ligand engagement. The readout is the cumulative &#34;force history&#34; of the cell interacting with the surface. There are some common issues with the TGT surfaces that can be present during these experiments. High surface background fluorescence (Figure 6A,B), patchy surface appearance, failure of the cells to generate tension signal (Figure 6C,D), and failure of cells to spread (Figure 6E,F) may be due to technical shortcomings with the TGT probe or surface synthesis. Solutions to these common issues are presented in Table 1.
The straightforward design of TGT probes provides cell biologists with a powerful tool to study specific growth factor-integrin signaling outcomes in isolation without interference from other cell surface receptors by providing only specific ligands and stimulations. Additionally, TGT probes allow investigation of the tension threshold underlining individual integrin receptors during cell adhesion at pN sensitivity. Alternate approaches fail to report forces exerted by individual receptors with high spatial resolution in fixed samples31. Traction force microscopy is only sensitive to nN forces, an order of magnitude higher than the forces applied by individual integrin receptors15, and molecular tension probes measure pN forces, but because they are reversible, they do not robustly withstand fixation. For these reasons, TGT probes are an attractive tool to study the mechanics of growth factor-integrin interactions.
There are several technical nuances associated with TGT probes that should be considered before designing an experiment. The tension image is a snapshot in time, representing the force history and not an indicator of the receptor-ligand engagements at any given time point. Since signal generation is dependent on probe separation, the TGT fluorescence results from open probes not under active tension from receptor-ligand engagement. This means the readout for integrin tension obtained on the TGT surface is historical and cumulative in nature representing where there were forces larger than Ttol; the locations of current receptor-ligand forces less than Ttol are not reported19,32. Because TGT rupture results in termination of the receptor-ligand engagement, cell spreading is due to integrin-ligand interactions that experience forces lower than Ttol. The user must therefore be careful when defining the time post-plating to estimate the mechanical outcomes associated with integrin-based adhesions. Finally, the meaning of Ttol must be considered. The TGT probes employed here have a Ttol of 56 pN, where Ttol is the constant force needed to rupture 50% of the probes when applied for 2 s. When considering complicated biological systems, TGTs likely experience a heterogeneous and diverse force gradation with varying time dependencies. If TGTs are ruptured by forces larger than Ttol, the fluorescence would be an underestimation of the total tension. Alternatively, forces below Ttol applied for longer durations can rupture a similar number of probes as high threshold forces applied for shorter times. Both these scenarios may result in the same fluorescence intensity readout, making it difficult to resolve the exact tension magnitude or dynamics using TGT probes33,34.
Overall, assessments of integrin tension with growth factor stimulation should be made carefully by designing experiments with internal controls, comparing spreading profiles on other matrix-coated surfaces, making parallel assessments of TGT fluorescence in cells in the presence or absence of growth factor stimulation, and using TGTs with different Ttol. TGTs allow quantification of the role of growth factor signaling in regulating the mechanics of integrin receptors, focal adhesion dynamics, and cell spreading. This protocol can be used as a template for many TGT-based experiments using probes with different Ttol, different ligands, different cell types, or different stimulation conditions. Any proteins of interest can be labeled following fixation, and any type of quantitative image analysis may be implemented. As such, we present a template for numerous TGT experiments.
The use of TGT probes is not limited to studying integrins but can be extended to a diverse array of cell membrane receptors across different cell types by modifying the ligand. TGT probes have been used to investigate the role of forces in regulating various receptor signaling cascades, including identifying the mechanical role of Notch receptor mechanics in embryonic development and neurogenesis35, the forces mediating identification and internalization of antigens by B cell receptors36, and the mechanical proof-reading ability of T-cell surface receptors to detect changes in forces to boost the strength and specificity of signal transfer37. Together, these findings highlight the immense potential of TGT probes in a variety of experimental settings.

Cells have the intrinsic ability to sense, generate, and respond to mechanical forces, leading to changes in cellular phenotype and remodeling of the local microenvironment1,2. Forces play a crucial role in regulating many aspects of cell behavior, including adhesion, migration, proliferation, differentiation, and wound healing3,4. Aberrations in the bi-directional mechanical exchange between a cell and the microenvironment can lead to diseased states, including cancer5. Numerous membrane receptors are involved in maintaining cell-matrix homeostasis; of these, integrins and epidermal growth factor receptor (EGFR) have robust synergy6,7. Classically, integrins establish the mechanical link between the microenvironment and intracellular cytoskeleton while EGFR regulates cell growth, proliferation, and survival8,9. EGFR is a highly studied therapeutic target, focused on outside-in regulation facilitating intracellular signaling. EGFR-integrin crosstalk has been established genetically and biochemically to regulate the progression of multiple diseases, including cancer10,11. While studies indicate the existence of EGFR-integrin interplay, the outcomes are attributed to signaling pathways away from the plasma membrane7,12,13,14. The impact of EGFR, or other growth factors, on cell mechanics remains largely unexplored in part due to the lack of tools to measure cellular forces and signaling outcomes. The challenge lies in identifying appropriate tools to study the communication between these parallel signaling paradigms and to quantify their specific contributions to cell mechanics.
Several approaches have been developed to measure forces generated by cell adhesion receptors, and the reader is directed to in-depth reviews of these techniques15,16. Briefly, traction force microscopy and micro-pillar array detection rely on the deformation of an underlying substrate to infer nanonewton (nN) forces, an order of magnitude more than individual receptor forces17,18. Single-molecule techniques, including AFM and optical tweezers, are sensitive to single protein piconewton (pN) forces but measure only one receptor at a time and do not offer good (or any) spatial resolution. DNA-based molecular tension probes and tension gauge tether (TGT) probes offer pN force resolution with diffraction-limited (or better) spatial resolution, giving them a unique role in studying single-cell forces19,20 from diverse cell types, including fibroblasts, cancer cells, platelets, and immune cells21,22,23,24. While molecular tension probes have an extendable &#34;spring&#34; element, ideal for real-time imaging, TGT&#160;probes irreversibly rupture, leaving behind a fluorescent &#34;force history&#34;. TGTs additionally modulate the tension threshold of the underlying substrate; a series of probes with similar chemical compositions but different rupture forces, or tension tolerances (Ttol), can be used to quantify the minimum tension required for focal adhesion formation and cell spreading. TGT probes consist of two complementary DNA strands, one anchored to the surface and the other presenting a ligand to the cell. If a receptor binds the ligand and exerts a force greater than the Ttol of the probe, the strands will be separated. Ttol is defined as the constant force needed to rupture 50% of the probes in a 2 s interval under ideal conditions. In &#34;turn-on&#34; TGT probes, a quencher on the top strand can be separated from a fluorophore on the bottom strand. Only where the TGT probe has been ruptured, presumably by forces greater than or equal to Ttol, will a fluorescent signal be generated. TGT probes can also be fixed, allowing for easy manipulation of biological systems and testing of multiple conditions. For these reasons, TGT probes were used in this work.
TGT probes were employed to study how integrin-dependent cell adhesion and mechanical forces are modulated by activated EGFR21. This work established EGFR as a &#39;mechano-organizer&#39;, tuning focal adhesion organization and tension generation. Additionally, it was found that EGF stimulation influenced the distribution and maturity of focal adhesions and enhanced cell spreading. This approach could be used in future studies to investigate how growth factors influence mechanical forces in tumor progression and dynamics. While the role of EGFR-integrin crosstalk in regulating the epithelial to mesenchymal transition is established, the role of mechanical forces in this process remains under-explored10.
Here, a detailed protocol is presented for these experiments covering the synthesis and assembly of 56 pN TGT probes, generation of TGT surfaces on glass coverslips, application of Cos-7 cells on the TGT surface and stimulation with EGF, fixation, and staining of cells with phalloidin, and an anti-paxillin antibody, high-resolution total internal reflection fluorescence (TIRF) and reflection interference contrast microscopy (RICM) imaging, and image quantification. This protocol, though written to investigate EGF stimulation of Cos-7 cells, is readily adaptable for many TGT based experiments. Different ligands, Ttol, cell types, stimulation parameters, proteins labeled following fixation, and quantitative analysis can be easily substituted in, making this protocol robust and widely useful.

<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td>(3-Aminopropyl)triethoxysilane</td>
			<td>Millipore Sigma</td>
			<td>440140</td>
			<td>Surface Preparation</td>
		</tr>
		<tr>
			<td>3-hydroxypicolinic acid (3-HPA)</td>
			<td>Millipore Sigma</td>
			<td>56197</td>
			<td>Maldi-TOF-MS matrix</td>
		</tr>
		<tr>
			<td>Acetic Acid, Glacial</td>
			<td>Fisher Scientific</td>
			<td>A38S</td>
			<td>Diluting EGF</td>
		</tr>
		<tr>
			<td>Acetonitrile (HPLC)</td>
			<td>Fisher Scientific</td>
			<td>A998SK</td>
			<td>Oligonucleotide Preparation</td>
		</tr>
		<tr>
			<td>Alexa Fluor 488 Phalloidin</td>
			<td>Cell Signaling Technology</td>
			<td>8878S</td>
			<td>Immunocytochemistry</td>
		</tr>
		<tr>
			<td>Ammonium Chloride</td>
			<td>Fisher Scientific</td>
			<td>A687</td>
			<td>Immunocytochemistry</td>
		</tr>
		<tr>
			<td>Anti-Paxillin antibody [Y113]</td>
			<td>Abcam</td>
			<td>ab32084</td>
			<td>Immunocytochemistry</td>
		</tr>
		<tr>
			<td>BD Syringes only with Luer-Lok</td>
			<td>BD bioscience</td>
			<td>309657</td>
			<td>Surface Preparation</td>
		</tr>
		<tr>
			<td>Bio-Gel P-2</td>
			<td>Bio-Rad</td>
			<td>1504118</td>
			<td>Oligonucleotide Preparation</td>
		</tr>
		<tr>
			<td>Bovine Serum Albumin (BSA) Protease-free Powder</td>
			<td>Fisher Scientific</td>
			<td>BP9703100</td>
			<td>Surface Preparation</td>
		</tr>
		<tr>
			<td>Cos-7 cells</td>
			<td>ATCC</td>
			<td>CRL-1651</td>
			<td>Cell Culture, Passage numbers 11-20</td>
		</tr>
		<tr>
			<td>Coverslip Mini-Rack, for 8 coverslips</td>
			<td>Fisher Scientific</td>
			<td>C14784</td>
			<td>Surface Preparation</td>
		</tr>
		<tr>
			<td>c(RGDfK(PEG-PEG)), PEG=8-amino-3,6-dioxaoctanoic acid</td>
			<td>Vivitide</td>
			<td>PCI-3696-PI</td>
			<td>Oligonucleotide Preparation</td>
		</tr>
		<tr>
			<td>Cy3B NHS ester</td>
			<td>GE Healthcare</td>
			<td>PA63101</td>
			<td>Oligonucleotide Preparation</td>
		</tr>
		<tr>
			<td>Dimethylformamide</td>
			<td>Millipore Sigma</td>
			<td>PHR1553</td>
			<td>Oligonucleotide Preparation</td>
		</tr>
		<tr>
			<td>DMEM with L-Glutamine, 4.5g/L Glucose and Sodium Pyruvate</td>
			<td>Fisher Scientific</td>
			<td>MT10013C</td>
			<td>Cell Culture</td>
		</tr>
		<tr>
			<td>Epidermal Growth Factor human EGF</td>
			<td>Millipore Sigma</td>
			<td>E9644</td>
			<td>Cell Culture</td>
		</tr>
		<tr>
			<td>Ethanol, 200 proof (100%)</td>
			<td>Fisher Scientific</td>
			<td>22032601</td>
			<td>Surface Preparation</td>
		</tr>
		<tr>
			<td>Falcon Standard Tissue Culture Dishes</td>
			<td>Fisher Scientific</td>
			<td>08-772E</td>
			<td>Surface Preparation</td>
		</tr>
		<tr>
			<td>Fetal Bovine Serum</td>
			<td>Fisher Scientific</td>
			<td>10-438-026</td>
			<td>Cell Culture</td>
		</tr>
		<tr>
			<td>Flurobrite DMEM</td>
			<td>Fisher Scientific</td>
			<td>A1896701</td>
			<td>Cell Culture</td>
		</tr>
		<tr>
			<td>Goat anti-Rabbit IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 647</td>
			<td>Invitrogen</td>
			<td>A-21244</td>
			<td>Immunocytochemistry</td>
		</tr>
		<tr>
			<td>Goat Serum</td>
			<td>Fisher Scientific</td>
			<td>16-210-064</td>
			<td>Immunocytochemistry</td>
		</tr>
		<tr>
			<td>Hank&#8217;s balanced salts (HBSS)</td>
			<td>Fisher Scientific</td>
			<td>14-170-161</td>
			<td>Cell Culture</td>
		</tr>
		<tr>
			<td>Horse Serum</td>
			<td>Fisher Scientific</td>
			<td>16050130</td>
			<td>Immunocytochemistry</td>
		</tr>
		<tr>
			<td>Hydrogen Peroxide</td>
			<td>Fisher Scientific</td>
			<td>H325-500</td>
			<td>Surface Preparation</td>
		</tr>
		<tr>
			<td>Nanosep MF centrifugal devices</td>
			<td>Pall laboratory</td>
			<td>ODM02C35</td>
			<td>Oligonucleotide Preparation</td>
		</tr>
		<tr>
			<td>NHS-azide</td>
			<td>Fisher Scientific</td>
			<td>88902</td>
			<td>Oligonucleotide Preparation</td>
		</tr>
		<tr>
			<td>Nitrogen Gas Cylinder</td>
			<td>Airgas</td>
			<td></td>
			<td>Surface Preparation</td>
		</tr>
		<tr>
			<td>No. 2 round glass coverslips - 25 mm</td>
			<td>VWR</td>
			<td>48382-085</td>
			<td>Surface Preparation</td>
		</tr>
		<tr>
			<td>Parafilm M Laboratory Film</td>
			<td>Fisher Scientific</td>
			<td>13-374-10</td>
			<td>Surface Preparation</td>
		</tr>
		<tr>
			<td>Paraformaldehyde 16%</td>
			<td>Fisher Scientific</td>
			<td>50-980-487</td>
			<td>Immunocytochemistry</td>
		</tr>
		<tr>
			<td>PBS, 1X</td>
			<td>Fisher Scientific</td>
			<td>21-030-CV</td>
			<td>Surface Preparation/Immunocytochemistry</td>
		</tr>
		<tr>
			<td>Penicillin-Streptomycin (5,000 U/mL)</td>
			<td>Fisher Scientific</td>
			<td>15-070-063</td>
			<td>Cell Culture</td>
		</tr>
		<tr>
			<td>PYREX Low Form Griffin Beakers</td>
			<td>Fisher Scientific</td>
			<td>02-540G</td>
			<td>Surface Preparation</td>
		</tr>
		<tr>
			<td>Sodium Ascorbate</td>
			<td>Fisher Scientific</td>
			<td>18-606-310</td>
			<td>Oligonucleotide Preparation</td>
		</tr>
		<tr>
			<td>Sodium Bicarbonate</td>
			<td>Fisher Scientific</td>
			<td>S233</td>
			<td>Oligonucleotide Preparation</td>
		</tr>
		<tr>
			<td>Sodium Chloride</td>
			<td>Fisher Scientific</td>
			<td>BP358</td>
			<td>Surface Preparation</td>
		</tr>
		<tr>
			<td>Streptavidin</td>
			<td>Fisher Scientific</td>
			<td>434301</td>
			<td>Surface Preparation</td>
		</tr>
		<tr>
			<td>Sulfo-NHS-LC-Biotin</td>
			<td>Fisher Scientific</td>
			<td>21335</td>
			<td>Surface Preparation</td>
		</tr>
		<tr>
			<td>Sulfuric Acid</td>
			<td>Fisher Scientific</td>
			<td>A300-500</td>
			<td>Surface Preparation</td>
		</tr>
		<tr>
			<td>TEAA</td>
			<td>Fisher Scientific</td>
			<td>NC0322726</td>
			<td>Oligonucleotide Preparation</td>
		</tr>
		<tr>
			<td>Triethylamine</td>
			<td>Millipore Sigma</td>
			<td>471283</td>
			<td>Oligonucleotide Preparation</td>
		</tr>
		<tr>
			<td>Trifluoroacetic Acid (TFA)</td>
			<td>Fisher Scientific</td>
			<td>PI28901</td>
			<td>Oligonucleotide Preparation</td>
		</tr>
		<tr>
			<td>THPTA</td>
			<td>Fisher Scientific</td>
			<td>NC1296293</td>
			<td>Oligonucleotide Preparation</td>
		</tr>
		<tr>
			<td>Triton X 100 Detergent Surfact Ams Solution</td>
			<td>Fisher Scientific</td>
			<td>85111</td>
			<td>Immunocytochemistry</td>
		</tr>
		<tr>
			<td>Water, DNA Grade, DNASE, Protease free</td>
			<td>Fisher Scientific</td>
			<td>BP24701</td>
			<td>Oligonucleotide Preparation</td>
		</tr>
		<tr>
			<td>Equipment</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Agilent AdvanceBio Oligonucleotide C18 column, 4.6 x 150 mm, 2.7 &#956;m</td>
			<td>Agilent</td>
			<td>653950-702</td>
			<td>Oligonucleotide Preparation</td>
		</tr>
		<tr>
			<td>High-performance liquid chromatography</td>
			<td>Agilent</td>
			<td>1100</td>
			<td>Oligonucleotide Preparation</td>
		</tr>
		<tr>
			<td>Low Speed Orbital Shaker</td>
			<td>Fisher Scientific</td>
			<td>10-320-813</td>
			<td>Immunocytochemistry</td>
		</tr>
		<tr>
			<td>Matrix-assisted laser desorption/ ionization time-of-flight mass spectrometer (MALDI-TOF-MS)</td>
			<td>Voyager STR</td>
			<td></td>
			<td>Oligonucleotide Preparation</td>
		</tr>
		<tr>
			<td>Molecular Probes Attofluor Cell Chamber</td>
			<td>Fisher Scientific</td>
			<td>A7816</td>
			<td>Surface Preparation</td>
		</tr>
		<tr>
			<td>Nanodrop 2000 UV-Vis Spectrophotometer</td>
			<td>Thermo Fisher</td>
			<td></td>
			<td>Oligonucleotide Preparation</td>
		</tr>
		<tr>
			<td>Nikon Eclipse Ti inverted microscope</td>
			<td>pe Nikon</td>
			<td></td>
			<td>Microscopy</td>
		</tr>
		<tr>
			<td>Nikon Perfect Focus System</td>
			<td>Nikon</td>
			<td></td>
			<td>Microscopy</td>
		</tr>
		<tr>
			<td>NIS Elements software</td>
			<td>Nikon</td>
			<td></td>
			<td>Microscopy</td>
		</tr>
		<tr>
			<td>ORCA-Flash4.0 V3 Digital CMOS camera</td>
			<td>Hamamatsu</td>
			<td></td>
			<td>Microscopy</td>
		</tr>
		<tr>
			<td>Quad band TIRF 405/488/561/647 cube</td>
			<td>CHROMA</td>
			<td></td>
			<td>Microscopy</td>
		</tr>
		<tr>
			<td>RICM Cube</td>
			<td>CHROMA</td>
			<td></td>
			<td>Microscopy</td>
		</tr>
		<tr>
			<td>SOLA v-nIR Light Engine</td>
			<td>Lumencor</td>
			<td></td>
			<td>Microscopy</td>
		</tr>
		<tr>
			<td>Thermo Forma Steri Cycle 370 CO2 Incubator</td>
			<td>Fisher Scientific</td>
			<td></td>
			<td>Cell Culture</td>
		</tr>
		<tr>
			<td>VWR 75D Ultrasonic Cleaner</td>
			<td>VWR</td>
			<td>13710</td>
			<td>Surface Preparation</td>
		</tr>
		<tr>
			<td>Data Analysis</td>
			<td></td>
			<td></td>
			<td>Use</td>
		</tr>
		<tr>
			<td>Fiji (Image J)</td>
			<td></td>
			<td>https://imagej.net/software/fiji/downloads</td>
			<td>Quantitative Analysis</td>
		</tr>
		<tr>
			<td>Graph Pad Prism</td>
			<td>Graph Pad</td>
			<td></td>
			<td>Statistical Analysis</td>
		</tr>
		<tr>
			<td>Oligo name</td>
			<td>5&#39;modification/ 3&#39; modification</td>
			<td>Sequence (5&#39; to 3&#39;)</td>
			<td>Use</td>
		</tr>
		<tr>
			<td>Alkyne-21-BHQ2</td>
			<td>5&#39; Hexynyl/ 3&#39; BHQ_2</td>
			<td>GTGAAATACCGCACAGATGCG</td>
			<td>Top strand TGT probe</td>
		</tr>
		<tr>
			<td>56 pN TGT</td>
			<td>5&#39; Biosg/TTTTTT/iUniAmM</td>
			<td>CGCATCTGTGCGGTATTTCACTTT</td>
			<td>Bottom strand TGT probe</td>
		</tr>
		<tr>
			<td>12 pN TGT</td>
			<td>5&#39; AmMC6/ 3&#39; BioTEG</td>
			<td>CGCATCTGTGCGGTATTTCACTTT</td>
			<td>Bottom strand TGT probe</td>
		</tr>
	</tbody>
</table>

tension gauge tether probes for quantifying growth factor mediated integrin mechanics and adhesion

Multicellular organisms rely on interactions between membrane receptors and cognate ligands in the surrounding extracellular matrix (ECM) to orchestrate multiple functions, including adhesion, proliferation, migration, and differentiation. Mechanical forces can be transmitted from the cell via the adhesion receptor integrin to ligands in the ECM. The amount and spatial organization of these cell-generated forces can be modulated by growth factor receptors, including epidermal growth factor receptor (EGFR). The tools currently available to quantify crosstalk-mediated changes in cell mechanics and relate them to&#160;focal adhesions, cellular morphology, and signaling are limited. DNA-based molecular force sensors known as tension gauge tethers (TGTs) have been employed to quantify these changes. TGT probes are unique in their ability to both modulate the underlying force threshold and report piconewton scale receptor forces across the entire adherent cell surface at diffraction-limited spatial resolution. The TGT probes used here rely on the irreversible dissociation of a DNA duplex by receptor-ligand forces that generate a fluorescent signal. This allows quantification of the cumulative integrin tension (force history) of the cell. This article describes a protocol employing TGTs to study the impact of EGFR on integrin mechanics and adhesion formation. The assembly of&#160;the TGT mechanical sensing platform is systematically detailed and the procedure to image forces, focal adhesions, and cell spreading is outlined. Overall, the ability to modulate the underlying force threshold of the probe, the adhesion ligand, and the type and concentration of growth factor employed for stimulation make this a robust platform for studying the interplay of diverse membrane receptors in regulating integrin-mediated forces.

Turn-on TGT probes were used to investigate the effect of ligand-activated epidermal growth factor receptor (EGFR) on integrin-mediated cell mechanics and adhesion formation in Cos-7 cells21. The probes present the ligand cyclic Arg-Gly-Asp-Phe-Lys (cRGDfK)21,23,25,26, which is selective for the integrin heterodimer &#945;V&#946;3 with only a small affinity for &#945;5&#946;1 integrins27,28,29,30. The TGT probe comprises a duplex DNA functionalized onto a glass coverslip surface via the bottom strand using biotin-streptavidin binding. The top strand displays the integrin ligand and is available to bind to the cognate integrin receptor on the cell membrane (Figure 5A). The bottom strand is labeled with a fluorophore and the top strand with a quencher, leading to minimal background fluorescence when the duplex TGT is intact. If an integrin binds the ligand and applies a force with a magnitude larger than the Ttol of the probe, the DNA duplex will separate leading to fluorescence (Figure 5A). Any TGT probe that has not been ruptured by a mechanical force will remain non-fluorescent. This force selective turn-on fluorescence allows systematic and quantitative mapping of pN scale integrin-generated forces at diffraction-limited resolution. TGT probes additionally modulate the tension threshold of the substrate.
Shown here is a representative example of a TGT surface with a Ttol of 56 pN. Cos-7 cells were plated on this TGT surface with or without EGF stimulation to study the impact of EGFR activation with ligand stimulation on cell adhesion and integrin mechanics (Figure 5A,B). The cells were incubated with or without EGF on the TGT surfaces for 60 mins, fixed, and immuno-stained to display the focal adhesion distribution (paxillin) and the organization of the cytoskeleton (F-actin) (Figure 5B). The cells were then imaged using RICM and TIRF microscopy. As clearly seen in the RICM image, Cos-7 cell spreading on the 56 pN TGT surface was significantly enhanced with EGF stimulation compared to without stimulation. This was quantified for 50 cells in each condition by measuring the size of the cell-substrate contact region from the RICM image (Figure 5C). Stimulation with EGF resulted in a more circular morphology, representative of Cos-7 cells spreading and growing in their natural physiological environment (Figure 5D). The fluorescence from open probes is also higher with EGF stimulation as observed in the tension fluorescence image. The integrated intensity of open probes, which is proportional to the number of open probes, was much higher with EGF stimulation compared to without (Figure 5B,E). This is a representation of all the receptor-ligand engagements where integrins applied a force greater than Ttol (56 pN).
Staining with paxillin showed that the distribution, number, maturation (size), and organization of focal adhesions were also impacted by EGF stimulation. Focal adhesions in EGF stimulated cells appeared more mature and radially oriented compared to no EGF controls. The F-actin cytoskeletal organization was also enhanced with EGF stimulation, as assessed by the phalloidin staining (Figure 5B). These qualitative assessments were made by visual comparison of images from both treatment groups. Quantitative analysis of focal adhesion can be done but is beyond the scope of this protocol. In this experiment, the TGT surface provided a platform to systematically detail the effect of EGFR activation on cell spreading, integrin mechanics, and focal adhesion formation.
<img alt="Figure 1" class="xfigimg" src="/files/ftp_upload/63529/63529fig01.jpg" /> 
Figure 1: Schematic for Day 1 of the TGT surface preparation. (A) Clean the coverslips. (B) Etch the coverslip surface. (C) Neutralize the Piranha solution. (D) Silanize the surface to make reactive amine groups. (E) Equilibrate the coverslips to the organic phase. (F) Dry the coverslips with an inert gas. (G) Biotinylate the surface amine groups. <a href="https://www.jove.com/files/ftp_upload/63529/63529fig01large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 2" class="xfigimg" src="/files/ftp_upload/63529/63529fig02.jpg" /> 
Figure 2: Schematic for Day 2 of the TGT surface preparation. (A) Clean and dry the coverslips to remove any residual biotin from the day before. (B) Passivate with BSA to prevent non-specific binding of reagent in subsequent steps. (C) Functionalize the coverslips with streptavidin. (D) Hybridize the probes in a thermo cycler. (E) Apply the synthesized probes to the coverslips (F) Assemble the coverslip in the cell imaging chamber. <a href="https://www.jove.com/files/ftp_upload/63529/63529fig02large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 3" class="xfigimg" src="/files/ftp_upload/63529/63529fig03.jpg" /> 
Figure 3: General workflow highlighting the broad steps across the entire experimental setup. (A) Process for cell detachment and plating on the TGT surface in basal media (DMEM) with or without EGF stimulation. (B) Flowchart of the steps involved in fixation and immuno-staining post-attachment and spreading on the TGT surface. (C) Post-staining, cells are imaged on an inverted fluorescence microscope with RICM and TIRF microscopy. <a href="https://www.jove.com/files/ftp_upload/63529/63529fig03large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 4" class="xfigimg" src="/files/ftp_upload/63529/63529fig04.jpg" /> 
Figure 4: Example of data processing and quantitative analysis. (A) Step-by-step breakdown of the analysis pipeline employed in Fiji (ImageJ) for RICM and tension image quantification. (B) A representative example for cell morphometric outcomes analyzed using the above pipeline. (C) Representative examples for cell mechanical outcomes analyzed using the above-mentioned pipeline. <a href="https://www.jove.com/files/ftp_upload/63529/63529fig04large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 5" class="xfigimg" src="/files/ftp_upload/63529/63529fig05.jpg" /> 
Figure 5: Example data from a TGT experiment. (A) Diagram highlighting the contact zone at the cell membrane-TGT surface interface. Inset projects integrins interacting with its cognate ligand cRGDfK with (right) or without (left) EGF stimulation. (B) RICM and TIRF images of Cos-7 cells spread on the 56 pN TGT surface. The images are obtained 60 min post-plating with or without EGF stimulation. Individual RICM (as acquired), integrin tension (grayscale), paxillin (orange hot), and F-actin (blue-green) images are shown with overlays for both stimulation conditions. Scale Bar: 10 &#956;m. The inset highlights a zoomed-in ROI (region of interest) detailing the colocalization of the generated integrin tension at sites of adhesion formation marked by paxillin, and the underlying subcellular cytoskeletal organization marked by actin. Scale Bar: 5 &#956;m. (C-E) Scatter plots for the spread area (RICM cell footprint) (C), circularity (D), and integrated tension (E) for Cos-7 cells with or without EGF stimulation. Bars indicate mean &#177; s.d. Differences between the groups were assessed statistically with Student&#39;s t-test; ****P &#60; 0.0001. n = 50 cells across three independent experiments. <a href="https://www.jove.com/files/ftp_upload/63529/63529fig05large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 6" class="xfigimg" src="/files/ftp_upload/63529/63529fig06.jpg" /> 
Figure 6: Example TGT surfaces with different possible problems. (A) Tension and RICM images of an ideal TGT surface with assembled probe quenched before cell adhesion. (B) Tension and RICM images of a TGT surface where the TGT probe lacks the top strand (quencher). Tension image shows uniform fluorescence from open fluorophore in the bottom strand. (C) Tension and RICM images for cells spread on an ideal TGT surface. (D) Tension and RICM images for cells spread on a poorly made TGT surface with limited passivation or degraded probe. (E) Tension, RICM, and brightfield images for cells plated on an ideal surface with cRGDfK ligand indicating cRGDfK-integrin interactions are vital for cell attachment and tension generation. (F) Tension, RICM, and brightfield images for cells plated on a surface without cRGDfK ligand on the TGT. While the cells are visible in the brightfield image, no cell attachment or generated integrin tension is observed. Scale Bar: 10 &#956;m. <a href="https://www.jove.com/files/ftp_upload/63529/63529fig06large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>

Watch this Scientific Journal Video about Tension Gauge Tether Probes for Quantifying Growth Factor Mediated Integrin Mechanics and Adhesion at JoVE.com

Tension Gauge Tether Probes for Quantifying Growth Factor Mediated Integrin Mechanics and Adhesion

TGT surface is an innovative platform to study growth factor-integrin crosstalk. The flexible probe design, specificity of the adhesion ligand, and precise modulation of stimulation conditions allow robust quantitative assessments of EGFR-integrin interplay. The results highlight EGFR as a 'mechano-organizer' tuning integrin mechanics, influencing focal adhesion assembly and cell spreading.

Multicellular organisms rely on interactions between membrane receptors and cognate ligands in the surrounding extracellular matrix (ECM) to orchestrate ...

tension-gauge-tether-probes-for-quantifying-growth-factor-mediated

Research

JoVE Journal

Biology

2.4K Views.  University of Alabama at Birmingham. TGT surface is an innovative platform to study growth factor-integrin crosstalk. The flexible probe design, specificity of the adhesion ligand, and precise modulation of stimulation conditions allow robust quantitative assessments of EGFR-integrin interplay. The results highlight EGFR as a 'mechano-organizer' tuning integrin mechanics, influencing focal adhesion assembly and cell spreading.

Video: Tension Gauge Tether Probes for Quantifying Growth Factor Mediated Integrin Mechanics and Adhesion

Assay for Adhesion and Agar Invasion in S. cerevisiae

Yeasts are found in natural biofilms, where many microorganisms colonize surfaces. In artificial environments, such as surfaces of man-made objects, biofilms can reduce industrial productivity, destroy structures, and threaten human life. 1-3 On the other hand, harnessing the power of biofilms can help clean the environment and generate sustainable energy. 4-8
The ability of S. cerevisiae to colonize surfaces and participate in complex biofilms was mostly ignored until the rediscovery of the differentiation programs triggered by various signaling pathways and environmental cues in this organism. 9, 10 The continuing interest in using S. cerevisiae as a model organism to understand the interaction and convergence of signaling pathways, such as the Ras-PKA, Kss1 MAPK, and Hog1 osmolarity pathways, quickly placed S. cerevisiae in the junction of biofilm biology and signal transduction research. 11-20 To this end, differentiation of yeast cells into long, adhesive, pseudohyphal filaments became a convenient readout for the activation of signal transduction pathways upon various environmental changes. However, filamentation is a complex collection of phenotypes, which makes assaying for it as if it were a simple phenotype misleading. In the past decade, several assays were successfully adopted from bacterial biofilm studies to yeast research, such as MAT formation assays to measure colony spread on soft agar and crystal violet staining to quantitatively measure cell-surface adherence. 12, 21 However, there has been some confusion in assays developed to qualitatively assess the adhesive and invasive phenotypes of yeast in agar.
Here, we present a simple and reliable method for assessing the adhesive and invasive quality of yeast strains with easy-to-understand steps to isolate the adhesion assessment from invasion assessment. Our method, adopted from previous studies, 10, 16 involves growing cells in liquid media and plating on differential nutrient conditions for growth of large spots, which we then wash with water to assess adhesion and rub cells completely off the agar surface to assess invasion into the agar. We eliminate the need for streaking cells onto agar, which affects the invasion of cells into the agar. In general, we observed that haploid strains that invade agar are always adhesive, yet not all adhesive strains can invade agar medium. Our approach can be used in conjunction with other assays to carefully dissect the differentiation steps and requirements of yeast signal transduction, differentiation, quorum sensing, and biofilm formation.

We describe a qualitative assay for yeast adhesion and agar invasion as a measure of invasive and pseudohyphal differentiation. This simple assay can be used to assess the invasive phenotype of various mutants as well as the effects environmental cues and signaling pathways on yeast differentiation.

Yeasts are found in natural biofilms, where many microorganisms colonize surfaces. In artificial environments, such as surfaces of man-made objects, ...

Growth Factor-Coated Bead Placement on Dorsal Forebrain Explants

This video demonstrates two methods for preparing and placing beads, which have been coated with growth factor, on explants of the developing cerebral cortex. These beads can be used to induce spatially restricted gene expression on developing neural tissue such as forebrain explants. Methods are given for using both Affi-Gel beads and heparin acryllic beads.

Placing Growth Factor-Coated Beads on Early Stage Chicken Embryos

The neural tube expresses many proteins in specific spatiotemporal patterns during development. These proteins have been shown to be critical for cell fate determination, cell migration, and formation of neural circuits. Neuronal induction and patterning involve bone morphogenetic protein (BMP), sonic hedgehog (SHH), fibroblast growth factor (FGF), among others. In particular, the expression pattern of Fgf8 is in close proximity to regions expressing BMP4 and SHH. This expression pattern is consistent with developmental interactions that facilitate patterning in the telencephalon.

Here we provide a visual demonstration of a method in which an in ovo preparation can be used to test the effects of Fgfs in the formation of the forebrain. Beads are coated with protein and placed in the developing neural tube to provide sustained exposure. Because the procedure uses small, carefully placed beads, it is minimally invasive and allows several beads to be placed within a single neural tube. Moreover, the method allows for continued development so that embryos can be analyzed at a more mature stage to detect changes in anatomy and in neural patterning. This simple but useful protocol allows for real time imaging. It provides a means to make spatially and temporally limited changes to endogenous protein levels.

A variety of growth factors and proteins interact to induce cells to take on different cell fates during development. Here we demonstrate the use of an in ovo preparation to address possible interactions between different proteins in development by placing beads on E2.5 chick embryos.

The neural tube expresses many proteins in specific spatiotemporal patterns during development.   These proteins have been shown to be critical for cell ...

Preparing T Cell Growth Factor from Rat Splenocytes

Maintenance of antigen-specific T cell lines or clones in culture requires rounds of antigen-induced activation separated by phases of cell expansion 1,2. Addition of interleukin 2 to the culture media during the expansion phase is necessary to prevent cell death and sufficient to maintain short-term T cell lines but has been shown to increase Th1 polarization 3. Replacement of interleukin 2 by T cell growth factor (TCGF) which contains a mix of cytokines is more effective than interleukin 2 in maintaining long-term T cell lines in vitro 3. Moreover, TCGF can easily be prepared in large amounts in the laboratory and is much cheaper than recombinant interleukin 2. 
Here, we show how to prepare TCGF from rat splenocyte culture supernatants. For this procedure, we harvest spleens from naive Lewis rats euthanized for thymus and blood collection. We prepare single-cell suspensions from the spleens, lyze the red blood cells by osmotic shock, and seed the splenocytes in culture medium. The cells are stimulated with concanavalin A, a mitogen that non-selectively activates all rat T lymphocytes, inducing the production of cytokines. The culture supernantant is collected 48 hours later andexcess concanavalin A is bound to alpha methyl mannoside to prevent it from activating T cell lines to which TCGF will be added. The TCGF is then sterile-filtered, aliquoted, and stored at -20&deg;C.

We describe the preparation of T cell growth factor used for the in vitro expansion of antigen-specific rat T lymphocyte lines.

Maintenance of antigen-specific T cell lines or clones in culture requires rounds of antigen-induced activation separated by phases of cell expansion 1,2. ...

A Magnetic Tether System to Investigate Visual and Olfactory Mediated Flight Control in Drosophila

It has been clear for many years that insects use visual cues to stabilize their heading in a wind stream. Many animals track odors carried in the wind. As such, visual stabilization of upwind tracking directly aids in odor tracking. But do olfactory signals directly influence visual tracking behavior independently from wind cues? Also, the recent deluge of research on the neurophysiology and neurobehavioral genetics of olfaction in Drosophila has motivated ever more technically sophisticated and quantitative behavioral assays. Here, we modified a magnetic tether system originally devised for vision experiments by equipping the arena with narrow laminar flow odor plumes. A fly is glued to a small steel pin and suspended in a magnetic field that enables it to yaw freely. Small diameter food odor plumes are directed downward over the fly s head, eliciting stable tracking by a hungry fly. Here we focus on the critical mechanics of tethering, aligning the magnets, devising the odor plume, and confirming stable odor tracking.

Here we describe how to tether a fly in an olfactory magnetic-tether (OMT) apparatus. We describe how to align the rare-earth magnets and odor ports, and how to set mass flow rates for both the stimulus delivery and vacuum suction to achieve optimal odor tracking.

It has been clear for many years that insects use visual cues to stabilize their heading in a wind stream. Many animals track odors carried in the wind. ...

Modified Yeast-Two-Hybrid System to Identify Proteins Interacting with the Growth Factor Progranulin

Progranulin (PGRN), also known as granulin epithelin precursor (GEP), is a 593-amino-acid autocrine growth factor. PGRN is known to play a critical role in a variety of physiologic and disease processes, including early embryogenesis, wound healing 1, inflammation 2, 3, and host defense 4. PGRN also functions as a neurotrophic factor 5, and mutations in the PGRN gene resulting in partial loss of the PGRN protein cause frontotemporal dementia 6, 7. Our recent studies have led to the isolation of PGRN as an important regulator of cartilage development and degradation 8-11. Although PGRN, discovered nearly two decades ago, plays crucial roles in multiple physiological and pathological conditions, efforts to exploit the actions of PGRN and understand the mechanisms involved have been significantly hampered by our inability to identify its binding receptor(s). To address this issue, we developed a modified yeast two-hybrid (MY2H) approach based on the most commonly used GAL4 based 2-hybrid system. Compared with the conventional yeast two-hybrid screen, MY2H dramatically shortens the screen process and reduces the number of false positive clones. In addition, this approach is reproducible and reliable, and we have successfully employed this system in isolating the binding proteins of various baits, including ion channel 12, extracellular matrix protein 10, 13, and growth factor14. In this paper, we describe this MY2H experimental procedure in detail using PGRN as an example that led to the identification of TNFR2 as the first known PGRN-associated receptor 14, 15.

We have modified the conventional yeast two-hybrid screening, an effective genetic tool in identifying protein interaction. This modification markedly shortens the process, reduces the workload, and most importantly, reduces the number of false positives. In addition, this approach is reproducible and reliable.

Progranulin (PGRN), also known as granulin epithelin precursor (GEP), is a 593-amino-acid autocrine growth factor. PGRN is known to play a critical role ...

Robust 3D DNA FISH Using Directly Labeled Probes

3D DNA FISH has become a major tool for analyzing three-dimensional organization of the nucleus, and several variations of the technique have been published. In this article we describe a protocol which has been optimized for robustness, reproducibility, and ease of use. Brightly fluorescent directly labeled probes are generated by nick-translation with amino-allyldUTP followed by chemical coupling of the dye. 3D DNA FISH is performed using a freeze-thaw step for cell permeabilization and a heating step for simultaneous denaturation of probe and nuclear DNA. The protocol is applicable to a range of cell types and a variety of probes (BACs, plasmids, fosmids, or Whole Chromosome Paints) and allows for high-throughput automated imaging. With this method we routinely investigate nuclear localization of up to three chromosomal regions.

We describe a robust and versatile protocol for analyzing nuclear architecture by 3D DNA FISH using directly labeled fluorescent probes.

3D DNA FISH has become a major tool for  analyzing three-dimensional organization of the nucleus, and several variations  of the technique have been ...

Kinematic Analysis of Cell Division and Expansion: Quantifying the Cellular Basis of Growth and Sampling Developmental Zones in Zea mays Leaves

Growth analyses are often used in plant science to investigate contrasting genotypes and the effect of environmental conditions. The cellular aspect of these analyses is of crucial importance, because growth is driven by cell division and cell elongation. Kinematic analysis represents a methodology to quantify these two processes. Moreover, this technique is easy to use in non-specialized laboratories. Here, we present a protocol for performing a kinematic analysis in monocotyledonous maize (Zea mays) leaves. Two aspects are presented: (1) the quantification of cell division and expansion parameters, and (2) the determination of the location of the developmental zones. This could serve as a basis for sampling design and/or could be useful for data interpretation of biochemical and molecular measurements with high spatial resolution in the leaf growth zone. The growth zone of maize leaves is harvested during steady-state growth. Individual leaves are used for meristem length determination using a DAPI stain and cell-length profiles using DIC microscopy. The protocol is suited for emerged monocotyledonous leaves harvested during steady-state growth, with growth zones spanning at least several centimeters. To improve the understanding of plant growth regulation, data on growth and molecular studies must be combined. Therefore, an important advantage of kinematic analysis is the possibility to correlate changes at the molecular level to well-defined stages of cellular development. Furthermore, it allows for a more focused sampling of specified developmental stages, which is useful in case of limited budget or time.

Kinematic Analysis of Cell Division and Expansion: Quantifying the Cellular Basis of Growth and Sampling Developmental Zones in Zea mays Leaves

Quantifying cell division and expansion is of crucial importance to the understanding of whole-plant growth. Here, we present a protocol to calculate cellular parameters determining maize leaf growth rates and highlight the use of these data for investigating molecular growth regulatory mechanisms by directing developmental stage-specific sampling strategies.

Growth analyses are often used in plant science to investigate contrasting genotypes and the effect of environmental conditions. The cellular aspect of ...

Analyzing Cell Surface Adhesion Remodeling in Response to Mechanical Tension Using Magnetic Beads

Mechanosensitive cell surface adhesion complexes allow cells to sense the mechanical properties of their surroundings. Recent studies have identified both force-sensing molecules at adhesion sites, and force-dependent transcription factors that regulate lineage-specific gene expression and drive phenotypic outputs. However, the signaling networks converting mechanical tension into biochemical pathways have remained elusive. To explore the signaling pathways engaged upon mechanical tension applied to cell surface receptor, superparamagnetic microbeads can be used. Here we present a protocol for using magnetic beads to apply forces to cell surface adhesion proteins. Using this approach, it is possible to investigate not only force-dependent cytoplasmic signaling pathways by various biochemical approaches, but also adhesion remodeling by magnetic isolation of adhesion complexes attached to the ligand-coated beads. This protocol includes the preparation of ligand-coated superparamagnetic beads, and the application of define tensile forces followed by biochemical analyses. Additionally, we provide a representative sample of data demonstrating that tension applied to integrin-based adhesion triggers adhesion remodeling and alters protein tyrosine phosphorylation.

Cell surface adhesions are central in mechanotransduction, as they transmit mechanical tension and initiate the signaling pathways involved in tissue homeostasis and development. Here, we present a protocol for dissecting the biochemical pathways that are activated in response to tension, using ligand-coated magnetic microbeads and force application to adhesion receptors.

Mechanosensitive cell surface adhesion complexes allow cells to sense the mechanical properties of their surroundings. Recent studies have identified both ...

Molecular Analysis of Endothelial-mesenchymal Transition Induced by Transforming Growth Factor-&#946; Signaling

Phenotypic plasticity of endothelial cells underlies cardiovascular system development, cardiovascular diseases, and various conditions associated with organ fibrosis. In these conditions, differentiated endothelial cells acquire mesenchymal-like phenotypes. This process is called endothelial-mesenchymal transition (EndMT) and is characterized by downregulation of endothelial markers, upregulation of mesenchymal markers, and morphological changes. EndMT is induced by several signaling pathways, including transforming growth factor (TGF)-&#946;, Wnt, and Notch, and regulated by molecular mechanisms similar to those of epithelial-mesenchymal transition (EMT) important for gastrulation, tissue fibrosis, and cancer metastasis. Understanding the mechanisms of EndMT is important to develop diagnostic and therapeutic approaches targeting EndMT. Robust induction of EndMT in vitro is useful to characterize common gene expression signatures, identify druggable molecular mechanisms, and screen for modulators of EndMT. Here, we describe an in vitro method for induction of EndMT. MS-1 mouse pancreatic microvascular endothelial cells undergo EndMT after prolonged exposure to TGF-&#946; and show upregulation of mesenchymal markers and morphological changes as well as induction of multiple inflammatory chemokines and cytokines. Methods for the analysis of microRNA (miRNA) modulation are also included. These methods provide a platform to investigate mechanisms underlying EndMT and the contribution of miRNAs to EndMT.

Molecular Analysis of Endothelial-mesenchymal Transition Induced by Transforming Growth Factor-&amp;#946; Signaling

A protocol for in vitro induction of endothelial-mesenchymal transition (EndMT), which is useful for investigating cellular signaling pathways involved in EndMT, is described. In this experimental model, EndMT is induced by treatment with TGF-&#946; in MS-1 endothelial cells.

Phenotypic plasticity of endothelial cells underlies cardiovascular system development, cardiovascular diseases, and various conditions associated with ...