This study was supported by the National Natural Science Foundation of China (82090013).

The overall protocol requires 44 days, including 1 day for preparation of airway epithelial cells isolated from murine tracheas, 15 days for cell proliferation, and 28 days for CSE stimulation at the air-liquid interface. All experimental animals are housed in the SPF Barrier Animal Room of the Animal Experiment Center of Capital Medical University and have been reviewed and approved by the Animal Experiment and Laboratory Animal Ethics Committee of Capital Medical University (AEEI-2020-100) to meet the requirements of ARRIVE guidelines7.
1. Isolation of primary murine airway epithelial cells from murine tracheas
<ol>
	<li>Preparation
	<ol>
		<li>Prepare complete expansion medium by combining 1 mL of 50x supplement and 0.05 mL of hydrocortisone stock with 48.95 mL expansion basal medium. Store at 4 &#176;C and use within 4 weeks.</li>
		<li>Dissolve 7.5 mg of proteinase and 5 mg of deoxyribonuclease I in 5 mL of Ham&#39;s F-12 to prepare a proteinase solution. Filter it to sterilize and store at 4 &#176;C and use within 4 weeks.</li>
		<li>Prepare antibiotic solutions by adding 0.05 mL of 100x penicillin/streptomycin and 0.01 mL of 500x gentamicin/amphotericin to 5 mL of complete expansion medium, PBS, and proteinase solution (100 U/mL Penicillin, 100 U/mL Streptomycin, 10 &#181;g/mL gentamicin and 0.25 &#181;g/mL amphotericin B). Store at 4 &#176;C and use within 4 weeks.</li>
		<li>Sterilize surgical instruments and prepare the biological safety cabinet for cell isolation. Simultaneously, ensure that standard cell culture equipment is ready for use.</li>
		<li>Prepare rat tail collagen-coated dishes by adding rat tail collagen (100 &#181;g/mL in 0.02 N acetic acid) into 100 mm culture dishes and 24 mm transwells (0.05 mL/cm2). Leave open overnight under UV light for sterilization.</li>
	</ol>
	</li>
	<li>Isolation of primary murine airway epithelial cells
	<ol>
		<li>Use C57BL/6 mice (6-8 weeks old, male, SPF-raised) for tracheal epithelial cell isolation. Euthanize with 1% pentobarbital sodium solution overdose (about 200 mg/kg). Use five mice for sufficient cell yield.</li>
		<li>Sterilize the mouse by immersion in 75% ethanol solution, not immersing the nose and mouth in alcohol to prevent alcohol from flowing into the trachea.</li>
		<li>Dissect the mouse.
		<ol>
			<li>Use surgical blades and forceps, one set of devices for cutting and opening the epidermis from the lower jaw to the abdominal cavity of the mouse.</li>
			<li>Use another set of surgical instruments to tear apart the thyroid glands on both sides and remove the connections between the trachea, the surrounding muscle tissue, and the esophagus.</li>
			<li>After that, carefully cut into the chest, use forceps to delve deeper into the chest cavity, take out the entire lung, and find the end of the trachea.</li>
		</ol>
		</li>
		<li>Process the trachea.
		<ol>
			<li>Cut out the trachea from the thyroid cartilage to the tracheo-bronchial branch and put it in a pre-cold expansion medium containing four antibiotics.</li>
			<li>Shake the tube to rinse as much blood as possible off the surface of the trachea, keep it on ice, and then start the surgery for the next mouse.</li>
		</ol>
		</li>
		<li>Transfer all collected tracheas to pre-cold PBS buffer containing four antibiotics (200 U/mL Penicillin, 200 U/mL Streptomycin, 20 &#181;g/mL gentamicin, and 0.5 &#181;g/mL amphotericin B) for pretreatment before digestion.</li>
		<li>Use a set of surgical instruments to remove clots and other tissue from the surfaces of the trachea, and then cut them into 1 cm2 size.</li>
		<li>Incubate tracheal tissue in proteinase solution at 37 &#176;C for 40 min.</li>
		<li>After 40 min, rock the tube several times and use a 40 &#181;m cell strainer to remove the remaining tissues. Rinse the chopped tracheas on a strainer with 5 mL of expansion medium, centrifuge the cell suspension at 400 x g for 5 min at 4 &#176;C, and discard the supernatant.</li>
		<li>Resuspend the obtained cells in 8 mL of expansion medium.</li>
		<li>Count the viable cells using trypan blue and a hemocytometer.</li>
		<li>Plate P0 cell suspension on 100 mm dishes (1 x 104 live cells/cm2) precoated with rat tail collagen, and culture the cells in an incubator at 37 &#176;C, 5% CO2.</li>
	</ol>
	</li>
</ol>
2. Expansion culture and passage of primary murine airway epithelial cells
<ol>
	<li>Replace the medium for the P0 cell culture every 3 days until cells reach 70%-80% confluency, usually within 6 days. At this point, murine tracheal epithelial cells can form an intact monolayer with a cobblestone appearance (Figure 1A-D).</li>
	<li>Pre-warm sufficient volumes of PBS, complete expansion medium, and animal component-free (ACF) cell dissociation kit to 37 &#176;C.</li>
	<li>Gently rinse the cells with 3 mL of PBS.</li>
	<li>Perform enzymatic dissociation.
	<ol>
		<li>Add 3 mL of ACF enzymatic dissociation solution to the dish and incubate at 37 &#176;C for 5 min. After pipetting, dislodge the cells gently and transfer the cell suspension to 3 mL of ACF enzyme inhibition solution.</li>
		<li>Repeat the addition of 3 mL of ACF enzymatic dissociation solution and incubate again for 5 min to ensure maximum cell detachment.</li>
	</ol>
	</li>
	<li>Spin the cell suspension at 400 x g for 5 min at 4 &#176;C. Discard the supernatant.</li>
	<li>Resuspend the cells in 1 mL of expansion medium.</li>
	<li>Count the viable cells using trypan blue and a hemocytometer.</li>
	<li>Plate P1 cell suspension on several 100 mm dishes (5 x 104 live cells/cm2) pre-coated with rat tail collagen, and culture the cells in an incubator at 37 &#176;C, 5% CO2.</li>
</ol>
3. Differentiation and CSE stimulation of primary murine airway epithelial cells at air-liquid interface
<ol>
	<li>Confirm the cell type.
	<ol>
		<li>Verify the epithelial origin of isolated cells using an immunofluorescence assay (IFA) with antibodies against cytokeratins. Seed cells on glass slides coated by rat tail collagen and use paraformaldehyde to fix them for at least 12 h after cells reach 80% confluency.</li>
		<li>Wash slides 3 times with PBS solution for 5 min and incubate them with 3% BSA and 0.1% triton X-100 in PBS solution at room temperature (RT) for 1 h.</li>
		<li>Incubate slides overnight at 4 &#176;C with commercial anti-pan cytokeratin antibody at a dilution of 1:500.</li>
		<li>The next day, wash slides 3 times with PBS solution for 5 min and incubate them with secondary antibody buffer at a dilution of 1:1000 at RT for 2 h in the dark.</li>
		<li>After incubation, wash slides 3 times with PBS (5 min per wash), and add DAPI at a dilution of 1:1000 to them. After incubation at RT for 15 min, wash slides once with PBS for 5 min.</li>
		<li>Observe slides under a fluorescence microscope and compare expression patterns to a positive control (A549 cell line) and a negative control (Raw264.7 cell line) (Figure 2).</li>
	</ol>
	</li>
	<li>Seed the cells for differentiation.
	<ol>
		<li>Detach and centrifuge P2 cells as previously described, and resuspend the cell pellet in an appropriate volume of expansion medium to facilitate plating of 1 x 104 live cells/cm2.</li>
		<li>Pipette 1 mL of cell suspension onto the apical chamber of the transwell polycarbonate membrane insert. To the basal compartment of the transwell, add 1.5 mL of proliferation media.</li>
	</ol>
	</li>
	<li>Incubate the cells at 37 &#176;C and fully change all medium in the basal and apical chambers every 3 days using expansion medium until confluence is reached. This typically takes 3-6 days.</li>
	<li>Prepare 50 mL of complete differentiation medium by adding 5 mL of ALI 10x Supplement, 500 &#181;L of ALI Maintenance Supplement, 100 &#181;L of heparin solution, and 250 &#181;L of hydrocortisone stock solution to 44.15 mL of ALI Basal Medium.</li>
	<li>Prepare CSE.
	<ol>
		<li>Bubble one cigarette through 12.5 mL of differentiation medium and then filter it through a 0.22 &#181;m pore filter to prepare CSE. To ensure standardization between experiments and batches of CSE, measure the absorbance at 320 nm on a spectrophotometer and define optical density (OD) of 1 as 100%8.</li>
	</ol>
	</li>
	<li>Use the differentiation medium containing an appropriate concentration of CSE to stimulate primary murine airway epithelial cells to detect effects on the differentiation of the cells.</li>
	<li>Allow cells to differentiate for 28 days, during which the basal chamber media is changed, and the apical side is washed twice a week by removing the apical chamber media and replacing the basal chamber media with the differentiation medium containing the appropriate concentration of CSE.</li>
	<li>Analyze the cells post-exposure.
	<ol>
		<li>After exposure to differentiation medium containing CSE, harvest the cells and the culture supernatants at any time point (i.e., 0-28 days) for detecting morphological changes (i.e., immunofluorescence assay (IFA) or hematoxylin-eosin staining (HE) or for bioinformatics analytical procedures (i.e., transcriptomics, proteomics, metabolomics, etc.).</li>
	</ol>
	</li>
</ol>

In Vitro Model of Murine Airway Epithelial Cells and Chronic Smoke Exposure

<ol>
	<li>Ritchie, A. I., Martinez, F. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+challenges+of+defining+early+chronic+obstructive+pulmonary+disease+in+the+general+population.">The challenges of defining early chronic obstructive pulmonary disease in the general population.</a> Am J Respir Crit Care Med. 203 (10), 1209-1210 (2021).</li><li>Caramori, G., Kirkham, P., Barczyk, A., Di Stefano, A., Adcock, I. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Molecular+pathogenesis+of+cigarette+smoking-induced+stable+COPD.">Molecular pathogenesis of cigarette smoking-induced stable COPD.</a> Ann N Y Acad Sci. 1340, 55-64 (2015).</li><li>Leino, M. S., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Barrier+disrupting+effects+of+alternaria+alternata+extract+on+bronchial+epithelium+from+asthmatic+donors.">Barrier disrupting effects of alternaria alternata extract on bronchial epithelium from asthmatic donors.</a> PLoS One. 8 (8), e71278 (2013).</li><li>Benediktsd&#243;ttir, B. E., Arason, A. J., Halld&#243;rsson, S., Gudj&#243;nsson, T., M&#225;sson, M., Baldursson, &. #. 2. 1. 1. ;. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Drug+delivery+characteristics+of+the+progenitor+bronchial+epithelial+cell+line+VA10.">Drug delivery characteristics of the progenitor bronchial epithelial cell line VA10.</a> Pharm Res. 30 (3), 781-791 (2013).</li><li>Walters, M. S., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Generation+of+a+human+airway+epithelium+derived+basal+cell+line+with+multipotent+differentiation+capacity.">Generation of a human airway epithelium derived basal cell line with multipotent differentiation capacity.</a> Respir Res. 14 (1), 135 (2013).</li><li>Prytherch, Z., Job, C., Marshall, H., Oreffo, V., Foster, M., B&#233;ruB&#233;, K. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Tissue-specific+stem+cell+differentiation+in+an+in+vitro+airway+model.">Tissue-specific stem cell differentiation in an in vitro airway model.</a> Macromol Biosc. 11 (11), 1467-1477 (2011).</li><li>Kilkenny, C., Browne, W., Cuthill, I. C., Emerson, M., Altman, D. G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Animal+research:+Reporting+in+vivo+experiments:+The+ARRIVE+guidelines.">Animal research: Reporting in vivo experiments: The ARRIVE guidelines.</a> Br J Pharmacol. 160 (7), 1577-1579 (2010).</li><li>Brekman, A., Walters, M. S., Tilley, A. E., Crystal, R. G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=FOXJ1+prevents+cilia+growth+inhibition+by+cigarette+smoke+in+human+airway+epithelium+in+vitro.">FOXJ1 prevents cilia growth inhibition by cigarette smoke in human airway epithelium in vitro.</a> Am J Respir Cell Mol Biol. 51 (5), 688-700 (2014).</li><li>Bajic, M., Maher, K. A., Deal, R. B. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Identification+of+open+chromatin+regions+in+plant+genomes+using+ATAC-seq.">Identification of open chromatin regions in plant genomes using ATAC-seq.</a> Methods Mol Biol. 1675, 183-201 (2018).</li><li>Shaykhiev, R., Crystal, R. G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Early+events+in+the+pathogenesis+of+chronic+obstructive+pulmonary+disease.+Smoking-induced+reprogramming+of+airway+epithelial+basal+progenitor+cells.">Early events in the pathogenesis of chronic obstructive pulmonary disease. Smoking-induced reprogramming of airway epithelial basal progenitor cells.</a> Ann Am Thorac Soc. 11 Suppl 5 (Suppl 5), S252-S258 (2014).</li><li>Raby, K. L., Michaeloudes, C., Tonkin, J., Chung, K. F., Bhavsar, P. K. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Mechanisms+of+airway+epithelial+injury+and+abnormal+repair+in+asthma+and+COPD.">Mechanisms of airway epithelial injury and abnormal repair in asthma and COPD.</a> Front Immunol. 14, 1201658 (2023).</li><li>Zhou, J. -. S., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Cigarette+smoke-initiated+autoimmunity+facilitates+sensitisation+to+elastin-induced+COPD-like+pathologies+in+mice.">Cigarette smoke-initiated autoimmunity facilitates sensitisation to elastin-induced COPD-like pathologies in mice.</a> Eur Respir J. 56 (3), 2000404 (2020).</li><li>Lam, H. C., Choi, A. M. K., Ryter, S. W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Isolation+of+mouse+respiratory+epithelial+cells+and+exposure+to+experimental+cigarette+smoke+at+air-liquid+interface.">Isolation of mouse respiratory epithelial cells and exposure to experimental cigarette smoke at air-liquid interface.</a> J Vis Exp. 48, 2513 (2011).</li><li>You, Y., Brody, S. L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Culture+and+differentiation+of+mouse+tracheal+epithelial+cells.">Culture and differentiation of mouse tracheal epithelial cells.</a> Methods Mol Biol. 945, 123-143 (2012).</li><li>Wandalsen, G. F., Lanza, F. d. e. C., Nogueira, M. C. P., Sol&#233;, D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Efficacy+and+safety+of+chloral+hydrate+sedation+in+infants+for+pulmonary+function+tests.">Efficacy and safety of chloral hydrate sedation in infants for pulmonary function tests.</a> Rev Paul Pediatr. 34 (4), 408-411 (2016).</li><li>Jiang, D., Schaefer, N., Chu, H. W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Air-liquid+interface+culture+of+human+and+mouse+airway+epithelial+cells.">Air-liquid interface culture of human and mouse airway epithelial cells.</a> Methods Mol Biol. 1809, 91-109 (2018).</li><li>Takagi, R., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=How+to+prevent+contamination+with+Candida+albicans+during+the+fabrication+of+transplantable+oral+mucosal+epithelial+cell+sheets.">How to prevent contamination with Candida albicans during the fabrication of transplantable oral mucosal epithelial cell sheets.</a> Regen Ther. 1, 1-4 (2015).</li><li>Culp, D. J., Latchney, L. R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Mucinlike+glycoproteins+from+cat+tracheal+gland+cells+in+primary+culture.">Mucinlike glycoproteins from cat tracheal gland cells in primary culture.</a> Am J Physiol. 265 (3 Pt 1), L260-L269 (1993).</li><li>Cao, X., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Invited+review:+human+air-liquid-interface+organotypic+airway+tissue+models+derived+from+primary+tracheobronchial+epithelial+cells-overview+and+perspectives.">Invited review: human air-liquid-interface organotypic airway tissue models derived from primary tracheobronchial epithelial cells-overview and perspectives.</a> In Vitro Cell Dev Biol Anim. 57 (2), 104-132 (2021).</li><li>Beb&#246;k, Z., Tousson, A., Schwiebert, L. M., Venglarik, C. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Improved+oxygenation+promotes+CFTR+maturation+and+trafficking+in+MDCK+monolayers.">Improved oxygenation promotes CFTR maturation and trafficking in MDCK monolayers.</a> Am J Physiol Cell Physiol. 280 (1), C135-C145 (2001).</li></ol>

The authors have nothing to disclose.

COPD is a common chronic airway inflammatory disease. Exposure to tobacco smoke leads to chronic airway inflammation, airway remodeling, and lung structural destruction, which is the result of the interaction of various structural cells and immune cells10. As the front line of the innate immune system in the lung, airway epithelial cells play a very important role during the development of the disease11. In this point of view, clarifying how epithelial cells change and regu...

Chronic obstructive pulmonary disease (COPD) is a heterogeneous lung condition with complex characteristics, while patients with COPD gradually tend to be younger1. Smoking, a primary risk factor for COPD2, has a profound impact on airway epithelial cells, which serve as the initial barrier against tobacco smoke. Despite this known association, the detailed mechanisms through which tobacco smoke induces changes in airway epithelial cells remain inadequately explored. A thorough understanding of these molecular alterations is essential for identifying early diagnostic markers and therapeutic targets for COPD.
To address this gap, we developed a novel in vitro model using murine airway epithelial cells. These cells were subjected to long-term stimulation with cigarette smoke extract (CSE), enabling us to monitor dynamic cellular changes and explore the changes in airway epithelial cells under long-term tobacco stimulation and the underlying mechanism. In this model, transwell was used to provide the air-liquid interface of airway epithelial cells, and cigarette smoke extract was stimulated in the early stage of epithelial cell differentiation until the end of differentiation at 28 days. Previous studies investigated only the differentiation and short-term stimulation of airway epithelial cells (cell line dominance). They were limited to a single regulatory pathway3,4,5,6. However, the protocol presented here uses primary mouse airway epithelial cells and optimizes the cell extraction process for better cell activity than previous airway epithelial cell culture methods. This model focuses on alterations in cellular differentiation alongside comprehensive transcriptomic, proteomic, metabolomic, and epigenomic analyses. Employing immunofluorescence and advanced multi-omics techniques, we aimed to elucidate the cellular responses of airway epithelial cells to chronic tobacco smoke exposure, thereby contributing to a deeper understanding of COPD pathogenesis. This model can be used to explore the changes in airway epithelial cell differentiation pattern and its mechanism caused by long-term stimulation of various pollutants.

<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td>100x Penicillin/Streptomycin solution</td>
			<td>Gibco</td>
			<td>15140122</td>
			<td></td>
		</tr>
		<tr>
			<td>24 mm Transwell with 0.4 &#181;m Pore Polyester Membrane Insert, Sterile</td>
			<td>BIOFIL</td>
			<td>TCS016012</td>
			<td></td>
		</tr>
		<tr>
			<td>40 &#181;m Cell Strainer</td>
			<td>Falcon</td>
			<td>352340</td>
			<td></td>
		</tr>
		<tr>
			<td>500x Gentamicin/Amphotericin Solution</td>
			<td>Gibco</td>
			<td>R01510</td>
			<td></td>
		</tr>
		<tr>
			<td>acetylated &#945;-Tubulin</td>
			<td>CST</td>
			<td>#5335</td>
			<td></td>
		</tr>
		<tr>
			<td>Acetyl-&#945;-Tubulin (Lys40) (D20G3)XP Rabbit mAb&#160;</td>
			<td>cellsignal</td>
			<td>#5335</td>
			<td></td>
		</tr>
		<tr>
			<td>Animal Component Free Cell Dissociation Kit</td>
			<td>Stemcell</td>
			<td>05426</td>
			<td></td>
		</tr>
		<tr>
			<td>Anti-pan Cytokeratin antibody</td>
			<td>abcam</td>
			<td>ab7753</td>
			<td></td>
		</tr>
		<tr>
			<td>Cigarette</td>
			<td>Marlboro</td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Claudin3</td>
			<td>immunoway</td>
			<td>YT0949</td>
			<td></td>
		</tr>
		<tr>
			<td>Deoxyribonuclase I from bovine pancreas</td>
			<td>Sigma-Aldrich</td>
			<td>DN25</td>
			<td></td>
		</tr>
		<tr>
			<td>Deoxyribonuclase I from bovine pancreas</td>
			<td>Sigma</td>
			<td>DN25</td>
			<td></td>
		</tr>
		<tr>
			<td>Ham&#8217;s F-12</td>
			<td>Sigma-Aldrich</td>
			<td>N6658</td>
			<td></td>
		</tr>
		<tr>
			<td>Heparin Solution&#160;</td>
			<td>Stemcell</td>
			<td>07980</td>
			<td></td>
		</tr>
		<tr>
			<td>Hydrocortisone Stock Solution</td>
			<td>Stemcell</td>
			<td>07925</td>
			<td></td>
		</tr>
		<tr>
			<td>Mucin 5AC</td>
			<td>abcam</td>
			<td>ab212636</td>
			<td></td>
		</tr>
		<tr>
			<td>Occludin</td>
			<td>proteintech</td>
			<td>27260-1-AP</td>
			<td></td>
		</tr>
		<tr>
			<td>PBS</td>
			<td>Cytosci</td>
			<td>CBS004S-BR500</td>
			<td></td>
		</tr>
		<tr>
			<td>Penicillin-Streptomycin Solution</td>
			<td>Gibco</td>
			<td>15140122</td>
			<td></td>
		</tr>
		<tr>
			<td>PneumaCult-ALI 
			Basal Medium</td>
			<td>Stemcell</td>
			<td>05002&#160;</td>
			<td></td>
		</tr>
		<tr>
			<td>PneumaCult-ALI 10x Supplement</td>
			<td>Stemcell</td>
			<td>05003&#160;</td>
			<td></td>
		</tr>
		<tr>
			<td>PneumaCult-ALI Maintenance Supplement</td>
			<td>Stemcell</td>
			<td>05006</td>
			<td></td>
		</tr>
		<tr>
			<td>PneumaCult-Ex Plus 50x Supplement</td>
			<td>Stemcell</td>
			<td>05042</td>
			<td></td>
		</tr>
		<tr>
			<td>PneumaCult-Ex Plus Basal Medium</td>
			<td>Stemcell</td>
			<td>05041</td>
			<td></td>
		</tr>
		<tr>
			<td>Pronase E</td>
			<td>Sigma-Aldrich</td>
			<td>P5147</td>
			<td></td>
		</tr>
		<tr>
			<td>Rat tail collagen</td>
			<td>Corning</td>
			<td>354236</td>
			<td></td>
		</tr>
		<tr>
			<td>Trypan Blue</td>
			<td>Stemcell</td>
			<td>07050&#160;</td>
			<td></td>
		</tr>
	</tbody>
</table>

in vitro model for studying differentiation and changes of multi-omics on murine airway epithelial cells stimulated with cigarette smoke extract

Chronic obstructive pulmonary disease (COPD) is largely attributed to tobacco smoke exposure. Investigating how airway epithelial cells functionally adapt to tobacco smoke is crucial for understanding the pathogenesis of COPD. The present study was to set up an in vitro model using primary murine airway epithelial cells to mimic the real-life impact of tobacco smoke. Unlike established cell lines, primary cells retain more in vivo-like properties, including growth patterns, aging, and differentiation. These cells exhibit a sensitive inflammatory response and efficient differentiation, thus closely representing physiological conditions. In this model, primary murine airway epithelial cells were cultured for 28 days under an air-liquid interface with an optimal concentration of cigarette smoke extract (CSE), which led to the transformation of a monolayer of undifferentiated cells into a pseudostratified columnar epithelium, indicative of CSE acclimation. Comprehensive multi-omics analyses were then applied to elucidate the mechanisms by which CSE influences the differentiation of basal airway cells. These insights provide a deeper understanding of the cellular processes underpinning COPD progression in response to tobacco smoke exposure.

Author Spotlight: Development and Characterization of an In Vitro Model to Study Chronic Cigarette Smoke Exposure and Its Impact on Airway Epithelial Cells in COPD Research

In Vitro Model for Studying Differentiation and Changes of Multi-Omics on Murine Airway Epithelial Cells Stimulated with Cigarette Smoke Extract

The scope of our research is to develop and characterize an in vitro model using airway epithelial cells to study the effects of chronic CSC exposure. We aimed to understand the cellular response that occurred in airway epithelial cells under long-term cigarette smoke exposure, which is relevant to the pathogenesis of COPD. The recognition of intricate epithelium immune cell interaction in COPD is considered a pivotal recent development in COPD research.We have established a novel in vitro model that mimic chronic CSC exposure in airway epithelial cells. Our findings open up new avenue of investigating the long-term effect of chronic cigarette smoke exposure on airway epithelial cells and their role in COPD progression. In the future, our laboratory will focus on exploring specific pathway that regulate epithelial cells differentiation and the role of airway epithelial cells heterogenetic in COPD treatment response.

Differentiation 
Murine airway epithelial cells successfully differentiated after culturing at an air-liquid interface with a differentiation medium for 28 days. The presence of ciliated and goblet cells was demonstrated by immunofluorescence assay of cilia marker acetylated &#945;-Tubulin (green; Figure 3A) and the goblet cell marker Mucin5AC, respectively6 (red; Figure 3B).
Determination of CSE concentr...

Here, we describe an in vitro model for isolating and differentiating murine airway epithelial cells, focusing on their acclimation to chronic cigarette smoke extract (CSE). The model could be utilized to comprehensively characterize the multi-omics impact of CSE, which possibly provides insights into the cellular responses under chronic smoke exposure.

Chronic obstructive pulmonary disease (COPD) is largely attributed to tobacco smoke exposure. Investigating how airway epithelial cells functionally adapt ...

in-vitro-model-for-studying-differentiation-changes-multi-omics-on

Research

JoVE Journal

Biology

482 Views.  Capital Medical University. The scope of our research is to develop and characterize an in vitro model using airway epithelial cells to study the effects of chronic CSC exposure. We aimed to understand the cellular response that occurred in airway epithelial cells under long-term cigarette smoke exposure, which is relevant to the pathogenesis of COPD. The recognition of intricate epithelium immune cell interaction in COPD is considered a pivotal recent development in COPD research.We have established a novel in v...

Video: Author Spotlight: Development and Characterization of an In Vitro Model to Study Chronic Cigarette Smoke Exposure and Its Impact on Airway Epithelial Cells in COPD Research

Isolation of Primary Murine Airway Epithelial Cells from Murine Tracheas

To begin, arrange freshly prepared expansion medium, filter sterilized proteinase and antibiotic solutions, and sterilized surgical instruments on the working platform of the biosafety cabinet. Add rat tail collagen into 100-millimeter culture dishes and 24-millimeter trans wells. Leave the dishes open overnight under ultraviolet light for sterilization.Immerse the euthanized mouse in 75%ethanol for sterilization. Do not immerse the nose and mouth. Using surgical scissors and forceps, cut and open the epidermis from the lower jaw to the abdominal cavity of the mouse.Using another set of surgical scissors and forceps, tear apart the thyroid glands on both sides and remove the connections between the trachea, the surrounding muscle tissue, and the esophagus. Next, carefully cut into the chest, and use forceps to delve deeper into the chest cavity. Remove the entire lung and find the end of the trachea.Cut out the trachea from the thyroid cartilage to the tracheal bronchial branch, and put it in a pre cold expansion medium containing four antibiotics. Shake the tube to rinse as much blood as possible off the surface of the trachea before placing it on ice. Now transfer the trachea to pre cold PBS containing four antibiotics.Using surgical scissors and forceps, remove clots and other tissue from the surface of the trachea and cut them into one square centimeter size. Incubate tracheal tissue in proteinase solution at 37 degrees Celsius. After 40 minutes, rock the tube several times and use a 40-micron cell strainer to remove the remaining tissues.Rinse the chopped trachea on a strainer with five milliliters of expansion medium. Centrifuge the tracheal suspension at 400 G for five minutes at four degrees Celsius, and resuspend the pellet in eight milliliters of expansion medium. Count the viable cells using trypan blue and the hemocytometer.Plate P0 cell suspension on a 100-millimeter dish, precoated with rat tail collagen. Culture the cells at 37 degrees Celsius with 5%carbon dioxide.

Expansion Culture and Passage of Primary Murine Airway Epithelial Cells

Once the murine tracheal epithelial cells form an intact monolayer with a cobblestone appearance, gently rinse the cells with three milliliters of prewarmed PBS. Add three milliliters of animal component-free enzymatic dissociation solution to the dish and incubate at 37 degrees Celsius for five minutes. Gently pipette to dislodge the cells and transfer the suspension to three milliliters of animal component-free enzyme inhibition solution.Centrifuge the cell suspension at 400 G for five minutes at four degrees Celsius and resuspend the pellet in one milliliter of expansion medium. Count the viable cells using trypan blue and a hemocytometer. Plate P1 cell suspension on a 100 millimeter dish pre-coated with rat tail collagen.Culture the cells at 37 degrees Celsius with 5%carbon dioxide.

Differentiation and Cigarette Smoke Extract (CSE) Stimulation of Primary Murine Airway Epithelial Cells at Air-Liquid Interface

Once the primary murine airway epithelial cells reach 80%confluency, seat cells on a glass slide coated with rat tail collagen. Then, add paraformaldehyde to fix the cells for 12 hours. Wash the slide three times with PBS for five minutes each, and incubate it with 3%bovine serum albumin and 0.1%Triton X-100 in PBS for one hour.Add anti-pan cytokeratin antibody at a dilution of one to 500 onto the slide, and incubate overnight at four degrees Celsius. The next day, wash the slide three times with PBS solution for five minutes each before incubating with secondary antibody at a dilution of one to 1, 000 for two hours in the dark. After washing the slide with PBS, add DAPI at a dilution of one to 1, 000 and incubate for 15 minutes.Wash the slide once with PBS for five minutes. Observe the slide under a fluorescence microscope to compare expression patterns to a positive control and a negative control After detachment and centrifugation, re-suspend the P2 phase cells in an appropriate volume of expansion medium. Pipette one milliliter of cell suspension onto the apical chamber of the Transwell polycarbonate membrane insert.Add 1.5 milliliters of proliferation media to the basal compartment of the Transwell. Incubate the cells at 37 degrees Celsius until confluence is reached. Prepare 50 milliliters of complete differentiation medium using the following components.Bubble one cigarette through 12.5 milliliters of differentiation medium, and then filter it through a 0.22 micron pour filter to prepare cigarette smoke extract or CSE. To ensure standardization between experiments and batches of CSE, measure the absorbance at 320 nanometers on a spectrophotometer. Next, remove the expansion medium from the apical and basal chamber of Transwells.Add a differentiation medium containing an appropriate concentration of CSE to stimulate primary murine airway epithelial cells for 28 days. During incubation, wash the apical chamber twice a week with PBS and replace the medium in the basal chamber with freshly prepared differentiation medium containing CSE. Murine airway epithelial cells successfully differentiated at an air liquid interface in 28 days.The presence of ciliated and goblet cells was demonstrated by immunofluorescence assay of cilia marker, acetylated alpha tubulin, and the goblet cell marker mucin 5AC respectively. Cell viability at 24 hours with varying CSE concentrations demonstrated that epithelial cells declined when the concentration was higher than 6%Cell activity under long-term stimulation showed no significant cell death with 2%4%and 6%CSE concentrations. But changes in transmembrane resistance and exfoliated cells were noted.In addition, an overall reduction in differentiated cells and ciliated cells was noted when murine airway epithelial cell cultures were chronically exposed to CSE.