Name: in vivo calcium imaging of lateral-line hair cells in larval zebrafish
Uploaded: 2018-11-28T15:00:00
Duration: 8 min 51 s
Description: Watch this Scientific Journal Video about In Vivo Calcium Imaging of Lateral-line Hair Cells in Larval Zebrafish at JoVE.com

This work was supported by NIH/NIDCD intramural research funds 1ZIADC000085-01 (K.S.K.). We would like to acknowledge Candy Wong for her assistance in writing the Fiji macro. We would also like to thank Doris Wu and Candy Wong for their helpful suggestions with the protocol.

<ol>
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A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Voltage-dependent+potassium+currents+in+cochlear+hair+cells+of+the+embryonic+chick.">Voltage-dependent potassium currents in cochlear hair cells of the embryonic chick.</a> Journal of Neurophysiology. 75 (1), 508-513 (1996).</li><li>Art, J. J., Fettiplace, R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Variation+of+membrane+properties+in+hair+cells+isolated+from+the+turtle+cochlea.">Variation of membrane properties in hair cells isolated from the turtle cochlea.</a> The Journal of Physiology. 385, 207-242 (1987).</li><li>Goutman, J. D., Pyott, S. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Whole-Cell+Patch-Clamp+Recording+of+Mouse+and+Rat+Inner+Hair+Cells+in+the+Intact+Organ+of+Corti.">Whole-Cell Patch-Clamp Recording of Mouse and Rat Inner Hair Cells in the Intact Organ of Corti.</a> Methods in Molecular Biology. 1427, 471-485 (2016).</li><li>Einarsson, R., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Patch+Clamp+Recordings+in+Inner+Ear+Hair+Cells+Isolated+from+Zebrafish.">Patch Clamp Recordings in Inner Ear Hair Cells Isolated from Zebrafish.</a> Journal of Visualized Experiments. (68), (2012).</li><li>Fuchs, P. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Time+and+intensity+coding+at+the+hair+cell's+ribbon+synapse.">Time and intensity coding at the hair cell's ribbon synapse.</a> The Journal of Physiology. 566, 7-12 (2005).</li><li>Moser, T., Brandt, A., Lysakowski, A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Hair+cell+ribbon+synapses.">Hair cell ribbon synapses.</a> Cell and Tissue Research. 326 (2), 347-359 (2006).</li><li>Trapani, J. G., Nicolson, T. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Chapter+8+-+Physiological+Recordings+from+Zebrafish+Lateral-Line+Hair+Cells+and+Afferent+Neurons.">Chapter 8 - Physiological Recordings from Zebrafish Lateral-Line Hair Cells and Afferent Neurons.</a> Methods in Cell Biology. 100, 219-231 (2010).</li><li>Olt, J., Ordoobadi, A. J., Marcotti, W., Trapani, J. G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Physiological+recordings+from+the+zebrafish+lateral+line.">Physiological recordings from the zebrafish lateral line.</a> Methods in Cell Biology. 133, 253-279 (2016).</li><li>Stawicki, T. M., Esterberg, R., Hailey, D. W., Raible, D. W., Rubel, E. W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Using+the+zebrafish+lateral+line+to+uncover+novel+mechanisms+of+action+and+prevention+in+drug-induced+hair+cell+death.">Using the zebrafish lateral line to uncover novel mechanisms of action and prevention in drug-induced hair cell death.</a> Frontiers in Cellular Neuroscience. 9, (2015).</li><li>Spinelli, K. J., Gillespie, P. G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Monitoring+Intracellular+Calcium+Ion+Dynamics+in+Hair+Cell+Populations+with+Fluo-4+AM.">Monitoring Intracellular Calcium Ion Dynamics in Hair Cell Populations with Fluo-4 AM.</a> PLOS ONE. 7 (12), 51874 (2012).</li><li>Kwan, K. M., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+Tol2kit:+a+multisite+gateway-based+construction+kit+for+Tol2+transposon+transgenesis+constructs.">The Tol2kit: a multisite gateway-based construction kit for Tol2 transposon transgenesis constructs.</a> Developmental Dynamics: An Official Publication of the American Association of Anatomists. 236 (11), 3088-3099 (2007).</li><li>Zhang, Q. X., He, X. J., Wong, H. C., Kindt, K. S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Chapter+10+-+Functional+calcium+imaging+in+zebrafish+lateral-line+hair+cells.">Chapter 10 - Functional calcium imaging in zebrafish lateral-line hair cells.</a> Methods in Cell Biology. 133, 229-252 (2016).</li><li>Sheets, L., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Enlargement+of+Ribbons+in+Zebrafish+Hair+Cells+Increases+Calcium+Currents+But+Disrupts+Afferent+Spontaneous+Activity+and+Timing+of+Stimulus+Onset.">Enlargement of Ribbons in Zebrafish Hair Cells Increases Calcium Currents But Disrupts Afferent Spontaneous Activity and Timing of Stimulus Onset.</a> The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 37 (26), 6299-6313 (2017).</li><li>Chou, S. -. W., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+molecular+basis+for+water+motion+detection+by+the+mechanosensory+lateral+line+of+zebrafish.">A molecular basis for water motion detection by the mechanosensory lateral line of zebrafish.</a> Nature Communications. 8 (1), 2234 (2017).</li><li>Thevenaz, P., Ruttimann, U. E., Unser, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+pyramid+approach+to+subpixel+registration+based+on+intensity.">A pyramid approach to subpixel registration based on intensity.</a> IEEE Transactions on Image Processing. 7 (1), 27-41 (1998).</li><li>. Fiji is just ImageJ Available from: <a target="_blank" href="https://fiji.sc/">https://fiji.sc/</a> (2018)</li><li>Esterberg, R., Hailey, D. W., Coffin, A. B., Raible, D. W., Rubel, E. W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Disruption+of+intracellular+calcium+regulation+is+integral+to+aminoglycoside-induced+hair+cell+death.">Disruption of intracellular calcium regulation is integral to aminoglycoside-induced hair cell death.</a> The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 33 (17), 7513-7525 (2013).</li><li>Stengel, D., Zindler, F., Braunbeck, T. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=An+optimized+method+to+assess+ototoxic+effects+in+the+lateral+line+of+zebrafish+(Danio+rerio)+embryos.">An optimized method to assess ototoxic effects in the lateral line of zebrafish (Danio rerio) embryos.</a> Comparative Biochemistry and Physiology Part C: Toxicology &amp; Pharmacology. 193, 18-29 (2017).</li><li>Fadero, T. C., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=LITE+microscopy:+Tilted+light-sheet+excitation+of+model+organisms+offers+high+resolution+and+low+photobleaching.">LITE microscopy: Tilted light-sheet excitation of model organisms offers high resolution and low photobleaching.</a> Journal of Cell Biology. , (2018).</li></ol>

The authors have nothing to disclose.

In vivo imaging in intact animals is inherently challenging. Several steps in this method are critical to obtaining reliable in vivo calcium measurements from lateral-line hair cells. For example, it is very important that the larva is pinned and paralyzed properly before imaging to minimize movement during imaging. Excess movement during imaging can lead to changes in GCaMP6s fluorescence that are not true signals and do not correspond to changes in calcium levels (e.g., Figures 4B1&#39;-B1&#39;&#39; and 4C1&#39;-C1&#39;&#39;). Tail pins can be placed more anteriorly to help minimize movement, though this may render more posterior neuromasts inaccessible. Furthermore, after heart injection, head pins can be rotated so that the horizontal portion of the pin lies across the yolk. In addition to altering the position of pins, it is also possible to use a brain-slice harp instead of pins to immobilize larvae34. When placed over the larvae properly, a harp is an additional, potentially less invasive method of immobilizing larvae. While significant movement can result from inadequate pinning, failure to properly perform the heart injection to deliver &#945;-bungarotoxin and paralyze larvae can result in incomplete paralysis, movement, and ultimately motion artifacts. Although commonly used anesthetics have been shown to affect the excitability of zebrafish hair cells, recent work has shown that the anesthetic benzocaine does not interfere with many aspects of hair-cell activity. Similarly, the more commonly used anesthetic MS-222 only interferes with certain aspects of hair-cell activity15. Therefore, due to the challenging nature of &#945;-bungarotoxin injection, benzocaine or MS-222 application may prove to be a useful alternative method of paralysis to prevent movement in the larva during functional calcium imaging.
In addition to the technical challenges involved in this protocol, even a perfectly mounted sample is useless if the larva and hair cells are not healthy prior to and during each imaging experiment. To ensure that larvae and hair cells are healthy, it is important that larvae are maintained in E3 buffer that is free of debris such as chorions (egg shells), waste, and microorganisms. Although the superficial location of lateral-line hair cells is advantageous for imaging, this location makes them more vulnerable to cellular damage when the E3 buffer is fouled. A clean, aqueous environment is particularly important for young larvae (2-4 dpf) or mutants that cannot maintain an upright swimming position and primarily lie on the bottom of the Petri dish. In these situations, lateral-line hair cells and the protective cupula surrounding the hair bundles can easily become compromised. Even when starting with healthy larvae and hair cells, throughout the course of each experiment, it is critical to ensure that the larva has a heartbeat and rapid blood flow. If blood flow slows or stops, the health of the hair cells can become compromised. In compromised preparations involving unhealthy larvae or loss of blood flow, dying hair cells can be identified several ways: first, by the appearance of karyopyknosis or nuclear condensation, which manifests as a bubble within the cell under DIC optics; second, by cell shrinkage and the presence of rapidly moving particles within the cytoplasm; and third, when kinocilia tips splay out in different directions35. When hair bundles are disrupted, the splayed kinocilia do not move cohesively together during stimulation.
This preparation has several minor limitations, one being that the preparation only remains robust for 1-3 hours after it is established. Modifications such as using smaller pins or a brain-slice harp to immobilize larvae and adding a perfusion system may extend the lifetime of this in vivo preparation. Another limitation is that photobleaching and phototoxicity can occur after repeated imaging trials. One exciting way to overcome this challenge is to adapt this protocol for light-sheet microscopy. Light-sheet microscopy is a powerful way to reduce out of focus light, leading to less photobleaching and phototoxicity36. Together, gentler immobilization and less photo-exposure may help prolong each imaging session. Longer imaging sessions can be used to examine the full duration of functional changes accompanying development and the processes underlying hair-cell clearance and regeneration after injury. It is important to point out that, in addition to light-sheet microscopy, this protocol can be adapted to other types confocal systems (point-scanning, 2-photon, and spinning disk) as well as relatively simple widefield systems28,34. Overall, its versatility makes this protocol a valuable tool that can be adapted and used with multiple imaging systems.
While this protocol can be adapted and used with many imaging systems, parts of this protocol can also be adapted and used (1) with other indicators besides GCaMP6s and (2) to image activity in other sensory cells and neurons within larval zebrafish. For example, in a previous study, we used this protocol to image activity using multiple genetically encoded indicators within lateral-line hair cells to detect cytosolic calcium (RGECO1), vesicle fusion (SypHy), membrane voltage (Bongwoori), and membrane calcium (jRCaMP1a-caax and GCaMP6s-caax), and within lateral-line afferent processes to detect membrane calcium (GCaMP6s-caax)5. Based on our experience using these indicators, the transgenic line Tg(myo6b:GCaMP6s-caax) described in this protocol offers an excellent start for imaging activity in lateral-line neuromasts. Of all the indicators listed above, we have found that GCaMP6s is the most sensitive and photostable. In addition to these features, we highlight the Tg(myo6b:GCaMP6s-caax) transgenic line because it can be used to make two distinct measurements: hair-cell mechanosensation and presynaptic calcium within a single transgenic line.
The technique outlined in this article demonstrates how calcium imaging in the zebrafish lateral line can be a powerful method to study how hair cells function in their native environment. This approach is complementary to studies of mammals in which hair-cell function is currently being studied in ex vivo explants. In addition, the zebrafish model can continue to be used as a platform to test the efficacy of genetically encoded indicators that can then be applied to examine activity in mammalian hair cells.

Functional calcium imaging is a powerful tool that can be used to monitor the activity of many cells simultaneously1. In particular, calcium imaging using genetically encoded calcium indicators (GECIs) has been shown to be advantageous because GECIs can be expressed in specific cell types and localized subcellularly2. In neuroscience research, these features have made calcium imaging using GECIs a powerful method to both define activity patterns within neuronal networks and measure calcium influx at individual synapses3,4. Taking advantage of these features, a recent study used confocal microscopy and GECIs to monitor subcellular activity within collections of sensory hair cells5.
Hair cells are the mechanoreceptors that detect sound and vestibular stimuli in the inner ear and local water movement in the lateral-line system in aquatic vetebrates6,7. Hair cells are often the target of damage or genetic mutations that result in the most common form of hearing loss in humans known as sensorineural hearing loss8,9. Therefore, it is critical to understand how these cells function in order to understand how to treat and prevent hearing loss. To properly function, hair cells utilize two specialized structures called mechanosensory-hair bundles and synaptic ribbons to detect and transmit stimuli, respectively. Hair bundles are located at the apex of hair cells and are made up primarily of fine, hair-like protrusions known as stereocilia (Figure 1A). In vestibular and lateral-line hair cells, each hair bundle also has a single long kinocilium (the cell&#39;s only true cilium), which can extend far above the stereocilia (Figure 1A). Mechanosensory stimuli deflect hair bundles, and deflection puts tension on linkages called &#34;tip-links&#34; that interconnect stereocilia10. This tension opens mechanotransduction (MET) channels located in the stereocilia, resulting in an apical influx of cations, including calcium11,12. This apical activity ultimately depolarizes the hair cell and opens voltage-gated calcium channels (Cav1.3) at the base of the cell. Cav1.3 channels are found adjacent to synaptic ribbons, a presynaptic structure that tethers vesicles at active zones. Basal calcium influx through Cav1.3 channels is required for vesicle fusion, neurotransmission, and activation of afferent neurons13,14.
For many years, electrophysiological techniques such as whole-cell patch clamping have been used to probe the functional properties of hair cells in many species, including zebrafish15,16,17,18,19,20. These electrophysiological recordings have been particularly valuable in the hearing and balance fields because they can be used to obtain extremely sensitive measurements from individual sensory cells, whose purpose is to encode extremely fast stimuli over a wide range of frequencies and intensities21,22. Unfortunately, whole-cell recordings cannot measure the activity of populations of hair cells. To study the activity of populations of cells in the zebrafish lateral-line, microphonic potentials and afferent action potentials have been used to measure the summed mechanosensitive and postsynaptic response properties of individual neuromasts23,24. Unfortunately, neither whole-cell recordings nor local field potential measurements have the spatial resolution to pinpoint where activity is occurring within individual cells or measure the activity of each cell within a population. More recently, calcium dyes and GECIs have been employed to bypass these challenges25,26.
In zebrafish, GECIs have proven to be a powerful approach to examining hair-cell function due to the relative ease of creating transgenic zebrafish and the optical clarity of larvae27. In zebrafish larvae, hair cells are present in the inner ear as well as the lateral-line system. The lateral line is made up of rosette-like clusters of hair cells called neuromasts that are used to detect local changes in water movement (Figure 1). The lateral line is particularly useful because it is located externally along the surface of the fish. This access has made it possible to stimulate hair cells and measure calcium signals optically in intact larvae. Overall, the ease of transgenesis, transparency of the larvae, and the unparalleled access of lateral-line hair cells have made zebrafish an invaluable model to study the activity of hair cells in vivo. This is a significant advantage compared to mammalian systems in which hair cells are surrounded by bony structures of the inner ear. This lack of access has made it very difficult to acquire functional in vivo measurements of mammalian hair cells.
The protocol outlined here describes how to monitor MET channel- and presynapse-dependent changes in calcium within individual hair cells and among cells within neuromasts in larval zebrafish. This protocol utilizes an established transgenic zebrafish line that expresses a membrane-localized GCaMP6s under the control of the hair-cell specific myosin6b promoter28. This membrane localization positions GCaMP6s to detect calcium influx through ion channels located in the plasma membrane that are critical for hair-cell function. For example, membrane-localized GCaMP6s can detect calcium influx through MET channels in apical hair bundles and through CaV1.3 channels near synaptic ribbons at the base of the cell. This contrasts with using GECIs localized in the cytosol, as cytosolic GECIs detect calcium signals that are a combination of MET and CaV1.3 channel activity as well as calcium contributions from other sources (e.g., store release). This protocol outlines how to immobilize and paralyze GCaMP6s transgenic larvae prior to imaging. It then describes how to prepare and use a fluid-jet to deflect the hair bundles to stimulate lateral-line hair cells in a controlled and reproducible manner. Representative data that can be achieved using this protocol are presented. Examples of data that represent movement artifacts are also presented. Control experiments that are used to verify results and exclude artifacts are described. Lastly, a method to visualize spatial calcium signals in the Fiji software is described. This Fiji analysis is adapted from previously established visualization methods developed using MATLAB5. Overall, this protocol outlines a powerful preparation technique that uses GECIs in larval zebrafish to measure and visualize hair-cell calcium dynamics in vivo.

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			<td height="22" style="height:22px;width:224px;">Section 1</td>
			<td style="width:229px;"></td>
			<td style="width:239px;"></td>
			<td style="width:463px;"></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">&#945;-Bungarotoxin</td>
			<td>R&#38;D Systems</td>
			<td>2133</td>
			<td>For paralyzing larvae prior to imaging</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Phenol red Solution 0.5%&#160;</td>
			<td>Sigma-Aldrich</td>
			<td>P0290</td>
			<td>For visualization of &#945;-bungarotoxin solution during heart injection</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Ethyl 3-aminobenzoate methanesulfonate (MESAB, MS-222, tricaine)</td>
			<td>Sigma-Aldrich</td>
			<td>A5040</td>
			<td>For anesthetizing larvae</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Section 2</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
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			<td height="21" style="height:21px;">Imaging chamber</td>
			<td>Siskiyou</td>
			<td>PC-R</td>
			<td>Platform to mount larvae for imaging</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">No. 1.5 Coverslips square, 22*22 mm</td>
			<td>VWR</td>
			<td>48366-227</td>
			<td>To seal imaging chamber&#160;</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">High vacuum silicone grease</td>
			<td>Fischer Scientific</td>
			<td>14-635-5D&#160;</td>
			<td>For affixing of coverslip to imaging chamber</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Silicone encapsulant clear 0.5 g kit</td>
			<td>Ellsworth Adhesives</td>
			<td>Dow Corning Sylgard, 184 SIL ELAST KIT 0.5KG</td>
			<td>To fill imaging chamber to create a surface to pin fish&#160;</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Oven</td>
			<td>Techne</td>
			<td>HB-1D</td>
			<td>For drying silicone encapsulant</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Stereomicroscope</td>
			<td>Carl Zeiss Microscopy</td>
			<td>Stemi 2000 with transmitted light illumination</td>
			<td>For illuminating wire, forceps and scissors to make pins</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Fine forceps</td>
			<td>Fine Science Tools</td>
			<td>Dumont #5 (0.05 x 0.02 mm) Item No. 11295-10</td>
			<td>For making pins&#160;</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Fine scissors&#160;</td>
			<td>Cole-Palmer</td>
			<td>5.5&#34;, EW-10818-00</td>
			<td>For cutting tunsgten wire to make pins</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Tungsten wire, 0.035 mm</td>
			<td>Goodfellow</td>
			<td>W005131</td>
			<td>For head pins to immobilize larvae</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Tungsten wire, 0.025 mm</td>
			<td>ThermoFischer Scientific</td>
			<td>AA10405-H4</td>
			<td>For tail pins to immobilize larvae</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Section 3</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Micropipette guller</td>
			<td>Sutter Instrument Company</td>
			<td>P-97</td>
			<td>For pulling capillary glass for fluid-jet and heart injection needles</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Borosilicate glass capillaries w/ filament</td>
			<td>Sutter Instrument Company</td>
			<td>BF 150-86-10</td>
			<td>Glass to be pulled into &#945;-bungarotoxin injection needles for heart injection</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Borosilicate glass capillaries w/o filament</td>
			<td>Sutter Instrument Company</td>
			<td>B 150-86-10</td>
			<td>Glass to be pulled into fluid-jet needles to stimulate hair cells</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Pipette polisher</td>
			<td>Narishige</td>
			<td>MF-830 microforge</td>
			<td>To polish fluid-jet pipette tips to smooth jagged breaks</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Ceramic tile</td>
			<td>Sutter Instrument Company</td>
			<td>NC9569052</td>
			<td>For scoring and evening breaking fluid-jet needles&#160;</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Sections 4 &#38; 5</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Fine forceps</td>
			<td>Fine Science Tools</td>
			<td>Dumont #5 (0.05 x 0.02 mm) Item No. 11295-10</td>
			<td>For pinning larvae</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Gel loading tips</td>
			<td>Eppendorf</td>
			<td>5242956003</td>
			<td>For backfilling heart injection needles</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Stereomicroscope</td>
			<td>Carl Zeiss Microscopy</td>
			<td>Stemi 2000 with transmitted light illumination</td>
			<td>For illuminating larvae during pinning and heart injection</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Glass capillary/needle holder</td>
			<td>WPI</td>
			<td>MPH315</td>
			<td>To hold fluid-jet needles</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Manual micromanipulator</td>
			<td>Narishige</td>
			<td>M-152</td>
			<td>For holding and positioning of needle holder to inject &#945;-bungarotoxin&#160;</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Magnetic stand</td>
			<td>Narishige</td>
			<td>GJ-1</td>
			<td>For holding manual micromanipulator for &#945;-bungarotoxin injection</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Pressure injector</td>
			<td>Eppendorf</td>
			<td>Femtojet 4x</td>
			<td>To deliver &#945;-bungarotoxin</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Sections 6, 7 &#38; 8</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Confocal microscope</td>
			<td>Bruker</td>
			<td>Swept field/Opterra confocal microscope</td>
			<td>Fixed, upright microscope with DIC optics and 488nm laser with appropriate filters</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Microscope software</td>
			<td>Bruker</td>
			<td>Prairieview 5.3</td>
			<td>To coordinate and control the microscope, lasers, stage, piezo-z, cameras and fluid jet</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">10X air objective</td>
			<td>Nikon</td>
			<td>MRH00101</td>
			<td>Low magnification for positioning of larvae and fluid jet</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">60X water objective</td>
			<td>Nikon</td>
			<td>MRF07620</td>
			<td>Water immerison objective with high NA (1.0) and adequate working distance (2.0 mm)</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Piezo-Z objective scanner with controller/driver</td>
			<td>Physik Intruments instruments/Bruker</td>
			<td>01144210/UM-Z-PZ</td>
			<td>High-speed z-stack acquisition with 0.025um accuracy</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">EMCCD camera&#160;</td>
			<td>QImaging</td>
			<td>Rolera EM-C2 EMCCD camera&#160;</td>
			<td>Camera with small pixel size that can acquire up to 100 frames per s</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Circular chamber adapter</td>
			<td>Siskiyou</td>
			<td>PC-A</td>
			<td>For holding and rotating imaging chamber on microscope stage</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Motorized Z-deck stage</td>
			<td>Prior Scientific</td>
			<td>ZDN12MP</td>
			<td>Microscope stage that can hold and move sample and micromanipulator with fluid-jet needle together</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Z-deck stage insert adaptor</td>
			<td>NIH Machine shop</td>
			<td>custom</td>
			<td>To fit the circular chamber adaptor onto the z-deck stage</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Fluid-jet apparatus</td>
			<td>ALA scientific instruments</td>
			<td>HSPC-1 High-speed pressure Clamp with PV-PUMP</td>
			<td>For controlling and delivering the fluid-jet stimulus</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Masterflex Peroxide-cured silicone tubing (1 ft)</td>
			<td>Cole-Palmer</td>
			<td>Masterflex L/S 13, 96400-13</td>
			<td>For connecting the fluid-jet needle holder to pressure pump</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Motorized micromanipulator</td>
			<td>Sutter Instrument Company</td>
			<td>MP-225</td>
			<td>For holding and positioning of needle holder for fluid jet&#160;</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Micromanipulator controller</td>
			<td>Sutter Instrument Company</td>
			<td>MPC-200</td>
			<td>For controlling fluid-jet needle manipulator</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Gel loading tips</td>
			<td>Eppendorf</td>
			<td>5242956003</td>
			<td>For backfilling fluid-jet needles</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Glass capillary/needle holder</td>
			<td>WPI</td>
			<td>MPH315</td>
			<td>To hold fluid-jet needles</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">PSI manometer</td>
			<td>Sper Scientific</td>
			<td>840081</td>
			<td>For measuring pressure clamp output</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Section 9</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">BAPTA, Tetrapotassium Salt, cell impermeant</td>
			<td>ThermoFischer Scientific</td>
			<td>B1204</td>
			<td>To cleave tips links, uncouple MET channels and block all evoked GCaMP6s signals</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Isradipine</td>
			<td>Sigma-Aldrich</td>
			<td>I6658</td>
			<td>To block signals dependent on the L-type calcium channels (CaV1.3) at the presynapse</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">DMSO</td>
			<td>Sigma-Aldrich</td>
			<td>D8418</td>
			<td>Solvent for pharmacological compounds</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Section 10</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Prism7</td>
			<td>Graphpad</td>
			<td>Prism7</td>
			<td>Software to plot GCaMP6 intensity changes</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">FIJI</td>
			<td>Schindelin, et., al.34</td>
			<td>https://fiji.sc/</td>
			<td>Software to process images and create spatio-temporal signal maps</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Turboreg Plugin</td>
			<td>Th&#233;venaz et., al.29&#160;</td>
			<td>http://bigwww.epfl.ch/thevenaz/turboreg/</td>
			<td>Plugin to register GCaMP6 image sequences in FIJI</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">StackReg Plugin</td>
			<td>Th&#233;venaz et., al.29</td>
			<td>http://bigwww.epfl.ch/thevenaz/stackreg/</td>
			<td>Plugin to register GCaMP6 image sequences in FIJI</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Times Series Analyzer V3 Plugin</td>
			<td>Balaji J 2007, Dept. of Neurobiology, UCLA</td>
			<td>https://imagej.nih.gov/ij/plugins/time-series.html</td>
			<td>Plugin to create multiple ROIs to measure GCaMP6 intensity changes</td>
		</tr>
	</tbody>
</table>

in vivo calcium imaging of lateral-line hair cells in larval zebrafish

Sensory hair cells are mechanoreceptors found in the inner ear that are required for hearing and balance. Hair cells are activated in response to sensory stimuli that mechanically deflect apical protrusions called hair bundles. Deflection opens mechanotransduction (MET) channels in hair bundles, leading to an influx of cations, including calcium. This cation influx depolarizes the cell and opens voltage-gated calcium channels located basally at the hair-cell presynapse. In mammals, hair cells are encased in bone, and it is challenging to functionally assess these activities in vivo. In contrast, larval zebrafish are transparent and possess an externally located lateral-line organ that contains hair cells. These hair cells are functionally and structurally similar to mammalian hair cells and can be functionally assessed in vivo. This article outlines a technique that utilizes a genetically encoded calcium indicator (GECI), GCaMP6s, to measure stimulus-evoked calcium signals in zebrafish lateral-line hair cells. GCaMP6s can be used, along with confocal imaging, to measure in vivo calcium signals at the apex and base of lateral-line hair cells. These signals provide a real-time, quantifiable readout of both mechanosensation- and presynapse-dependent calcium activities within these hair cells. These calcium signals also provide important functional information regarding how hair cells detect and transmit sensory stimuli. Overall, this technique generates useful data about relative changes in calcium activity in vivo. It is less well-suited for quantification of the absolute magnitude of calcium changes. This in vivo technique is sensitive to motion artifacts. A reasonable amount of practice and skill are required for proper positioning, immobilization, and stimulation of larvae. Ultimately, when properly executed, the protocol outlined in this article provides a powerful way to collect valuable information about the activity of hair-cells in their natural, fully integrated states within a live animal.

Watch this Scientific Journal Video about In Vivo Calcium Imaging of Lateral-line Hair Cells in Larval Zebrafish at JoVE.com

In Vivo Calcium Imaging of Lateral-line Hair Cells in Larval Zebrafish

The zebrafish is a model system that has many valuable features including optical clarity, rapid external development, and, of particular importance to the field of hearing and balance, externally located sensory hair cells. This article outlines how transgenic zebrafish can be used to assay both hair-cell mechanosensation and presynaptic function in toto.

Sensory hair cells are mechanoreceptors found in the inner ear that are required for hearing and balance. Hair cells are activated in response to sensory ...

Research

JoVE Journal

Neuroscience

Time-lapse Live Imaging of Clonally Related Neural Progenitor Cells in the Developing Zebrafish Forebrain

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Forebrain Electrophysiological Recording in Larval Zebrafish

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In vivo Neuronal Calcium Imaging in C. elegans

In vivo Neuronal Calcium Imaging in C. elegans

The nematode worm C. elegans is an ideal model organism  for relatively simple, low cost neuronal imaging in vivo. Its small transparent body and simple, ...

In Vivo Functional Brain Imaging Approach Based on Bioluminescent Calcium Indicator GFP-aequorin

In Vivo Functional Brain Imaging Approach Based on Bioluminescent Calcium Indicator GFP-aequorin

Functional in vivo imaging has become a powerful approach to study the function and physiology of brain cells and structures of interest. Recently a new ...

In vivo Calcium Imaging in Mouse Inferior Olive

In vivo Calcium Imaging in Mouse Inferior Olive

Inferior olive (IO), a nucleus in the ventral medulla, is the only source of climbing fibers that form one of the two input pathways entering the ...

Activity of Posterior Lateral Line Afferent Neurons during Swimming in Zebrafish

Sensory systems gather cues essential for directing behavior, but animals must decipher what information is biologically relevant. Locomotion generates ...

A Scalable Model to Study the Effects of Blunt-Force Injury in Adult Zebrafish

Blunt-force traumatic brain injuries (TBI) are the most common form of head trauma, which spans a range of severities and results in complex and ...

Brain Pericyte Calcium and Hemodynamic Imaging in Transgenic Mice In Vivo

Brain Pericyte Calcium and Hemodynamic Imaging in Transgenic Mice In Vivo

Recent advances in protein biology and mouse genetics have made it possible to measure intracellular calcium fluctuations of brain cells in vivo and to ...

Shuttle Box Assay as an Associative Learning Tool for Cognitive Assessment in Learning and Memory Studies using Adult Zebrafish

Cognitive deficits, including impaired learning and memory, are a primary symptom of various developmental and age-related neurodegenerative diseases and ...