We have developed a defined, reproducible, and longstanding protocol for small RNA sequencing and for analyzing normalized reads using opensource bioinformatics tools. The main advantages of our strategy are that it accurately collects microRNAs t
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Here, we describe a step-by-step strategy for isolating small RNAs, enriching for microRNAs, and preparing samples for high-throughput sequencing. We then describe how to process sequence reads and align them to microRNAs, using open source tools.