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Abstract

Genetics

A Pathway Association Study Tool for GWAS Analyses of Metabolic Pathway Information

Published: July 1st, 2020

DOI:

10.3791/61268

1Institute for Genomics, Biocomputing & Biotechnology, Mississippi State University, 2Corn Host Plant Resistance Research Unit, USDA-ARS

ERRATUM NOTICE

Important: There has been an erratum issued for this article. Read more …

Abstract

Recently, a new implementation of a previously described method for interpreting genome-wide association study (GWAS) data using metabolic pathway analysis has been developed and released. The Pathway Association Study Tool (PAST) was developed to address concerns with user-friendliness and slow-running analyses. This new user-friendly tool has been released on Bioconductor and Github. In testing, PAST ran analyses in less than one hour that previously required twenty-four or more hours. In this article, we present the protocol for using either the Shiny application or the R console to run PAST.

Erratum

Erratum: A Pathway Association Study Tool for GWAS Analyses of Metabolic Pathway Information

An erratum was issued for: A Pathway Association Study Tool for GWAS Analyses of Metabolic Pathway Information. One of the affiliations was updated.

The second affiliation was updated from:

USDA-ARS Corn Host Plant Resistance Research Unit, Mississippi State University

to:

Corn Host Plant Resistance Research Unit, USDA-ARS

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