This research was supported by Funda&#231;&#227;o de Amparo &#224; Pesquisa do Estado de S&#227;o Paulo - FAPESP (2015/21644-9; 2017/05264-7; 2017/05687-5; 2018/20722-4), Conselho Nacional de Desenvolvimento Cient&#237;fico e Tecnol&#243;gico (CNPq) and Coordena&#231;&#227;o de Aperfei&#231;oamento de Pessoal de N&#237;vel Superior (CAPES), financial code 001. We thank to our collaborators at the Laboratory of Maria Rita dos Santos e Passos-Bueno&#39;s and the Zebrafish Facility of the Genetics and Evolutionary Biology Department, in the Bioscience Institute of the University of S&#227;o Paulo. We kindly thank Cristiane Naffah de Souza Breda and Theresa Raquel de Oliveira Ramalho for the comments and suggestions on the manuscript. We greatly appreciate and thank Marcio Villar Martins, from the multimedia team of the Institute of Biomedical Sciences, for the recording, edition, and production of this video.

The procedures described in this protocol were previously approved to be used in the zebrafish model by the Animal Use Ethics Committee of the Institute of Biomedical Sciences of the University of S&#227;o Paulo.
1. AKI Induction by Cisplatin Intraperitoneal Injection
<ol>
	<li>Prepare cisplatin working solution by diluting the stock solution to 850 &#181;g/mL in 0.9% NaCl. Keep at room temperature, protected from light. 
	CAUTION: The fabricant recommends the manipulation of cisplatin with personal protective equipment (PPE) including goggles, gloves, and lab coat. Store the stock solution at room temperature, protected from light.</li>
	<li>Prepare 150 mg/L MS-222 (Tricaine) anesthetic in system water45. Anesthetize adult zebrafish (5-9 months) by immersion for approximately 1-2 min. 
	NOTE: Effectively anesthetized fish should be irresponsive to touch. To test effective anesthesia, gently press the caudal fin to observe reaction. 
	CAUTION: Tricaine is an irritant to the skin and eyes, use PPE to manipulate.</li>
	<li>Using a plastic spoon transfer the fish to an absorbent surface, such as paper towels, to remove excess water around the body. Then, with the plastic spoon transfer the fish to a Petri dish over a scale and weigh the fish. Take note of the weight of the fish as it will be necessary for dose calculations. 
	NOTE: Absorbing excess water from fish prevents overestimate the animal&#39;s weight, do not over-dry since is prejudicial to the fish.</li>
	<li>To achieve the final dose of 120 &#181;g/g of weight, divide the &#181;g of the final dose (120 &#181;g) per the &#181;g of the cisplatin working solution (850 &#181;g) and convert this number to microliters (&#181;L) by multiplying for 1000, to get the volume of 120 &#181;g of cisplatin (141.2 &#181;L). Then multiply this number (141.2 &#181;L) for the weight of the fish (g) to get the final volume to be injected.</li>
	<li>With a plastic spoon, transfer the fish on a wet sponge with a little cut to hold it, with the ventral side up. The sponge should be wet with anesthetic in system water.</li>
	<li>Fill a 31 G 1.0 mL insulin syringe with the calculated volume of cisplatin working solution.</li>
	<li>Insert the needle into the animal&#39;s intraperitoneal portion near the pelvic fin, at a shallow angle to avoid puncturing the viscera (Figure 2A). Then slowly inject the solution.</li>
	<li>After injection place the fish in a tank to recover from anesthesia. Watch the fish for signs of normal recovery (e.g., swimming movements, opercular movements). 
	&#8203;NOTE: The animal should recover in the next 3-5 min. If necessary, stimulate the fish by moving it with a plastic spoon, a Pasteur plastic pipette, or putting it close to a hose with bubbles.</li>
	<li>For control fish, perform the same procedure by injecting a solution of 0.9% NaCl. Use the same calculation following the proportion of body weight: the volume to be injected will be 141 &#181;L multiplied by the weight of the fish (g).</li>
	<li>Monitor survival of fish at least twice a day in the following days (Figure 2B).</li>
</ol>
2. Kidney Isolation and Tissue Processing for Flow Cytometry of Immune Cells
<ol>
	<li>For this procedure, use immune cell-fluorescent marked transgenic animals (e.g., Tg (mpo:GFP)).</li>
	<li>After 24 hpi of 120 &#181;g/g cisplatin, euthanize animals by hypothermal shock (rapid chilling). 
	NOTE: Hypothermal shock has been demonstrated to be more effective as euthanasia method than MS-222 overdose. Hypothermal shock is less stressful, fast, consistent, and safer for personnel than the use of MS-222, has previously described46,47.</li>
	<li>In an outer crossing tank prepare ice-water in a 5:1 ratio of ice to system water, put the inner tank with a screen over the ice, wait until water reaches 2-4 &#176;C. 
	NOTE: Fishes should not be in direct contact with the ice, because this may cause thermal burns and pain.</li>
	<li>Transfer animal to ice-water, wait at least 10 min until there is loss of orientation and no opercular movement.</li>
	<li>With a plastic spoon, place the fish on paper towels to dry off the excess water.</li>
	<li>Transfer the fish to a 3% agarose dissection plate and take it under a stereoscope with upper light. With scissors, decapitate fish making a fast cut just behind the eyes, and remove the head.</li>
	<li>With fine scissors make a cut from the open side to the cloaca and remove the internal organs with fine forceps.</li>
	<li>Use insect pins to pinch the sides of the body walls to open the carcass and expose the kidney attached to the backbone.</li>
	<li>Detach the kidney with fine forceps and place the organ in a 6 well plate with a cold solution of 1x PBS/2% FBS. Keep on ice.</li>
	<li>Pick up the tissue with a Pasteur plastic pipette and pass the tissue through a 40 &#181;m cell strainer over a 50 mL tube, gently macerating it with a syringe plunger.</li>
	<li>Wash twice with 1 mL of 1x PBS/2% FBS and collect the cells in a 50 mL tube.</li>
	<li>Centrifuge cells at 400 &#215; g for 5 min at 4 &#176;C.</li>
	<li>Carefully pick up all the supernatant with a 1 mL micropipette and discard it. Add 500 &#181;L of cold 1x PBS to resuspend the cells and place them in 5 mL flow cytometry tubes. Keep on ice.</li>
	<li>Count cells in Neubauer chamber making a 1:10 dilution in Trypan Blue (e.g., take 10 &#181;L of the sample and mix with 90 &#181;L of Trypan Blue). Add 10 &#181;L of the mixture to a Neubauer chamber and count cells under the microscope. 
	NOTE: Optimal results are expected with 1-5 x 106 cells/mL and &#62;80% viability. 
	CAUTION: Trypan blue is a carcinogenic agent, use PPE to handle.</li>
	<li>Take the cells to be read by a cytometer. Then analyze the results selecting the population of interest.</li>
</ol>
3. Processing of Adult Zebrafish Kidney Tissue for TUNEL Assay
<ol>
	<li>For this procedure, use wild-type animals (e.g., AB, T&#252;bingen, etc.) or a transgenic animal with different fluorescent color than the TUNEL kit, as similar fluorescence can interfere with TUNEL&#39;s analysis.</li>
	<li>After 24 hpi of 120 &#181;g/g cisplatin, euthanize animals by hypothermal shock (rapid chilling). See 2.3-2.4.</li>
	<li>Dissect the fish as described in 2.5-2.6; the kidney must remain attached to the backbone during the fixation procedure (explained below).</li>
	<li>Using insect pins, pinch the sides of the body walls to open the carcass and pin it on a cork surface to keep the kidney exposed. 
	NOTE: This procedure ensures that the kidney remains in the right position for later analysis.</li>
	<li>Then place the cork surface with the kidney facing down in a 6 well plate over a freshly made solution of 4% paraformaldehyde (PFA). Keep it overnight at 4 &#176;C. 
	CAUTION: PFA is carcinogenic and irritant for skin and mucous surfaces. Prepare PFA solutions under a chemical hood using PPE including eye protection equipment.</li>
	<li>The next day, dissect the kidneys as in 2.8. Place the kidneys in a 60 mm Petri dish with 1x PBS and rinse twice in 1x PBS.</li>
	<li>Prepare 2% agarose to generate a support matrix for the tissue.</li>
	<li>Discard all remaining 1x PBS from the Petri dish and pour 2% agarose slowly to cover the whole organ. Then position the kidney using fine forceps under a stereomicroscope to prevent the kidney to fold. Let agarose solidify at room temperature. 
	NOTE: This procedure will keep the orientation and shape of the organ through histological processing since the leaf-like shape of the organ causes a tendency to fold if it is not inside a supportive matrix.</li>
	<li>After agarose solidification, use a scalpel to cut the agarose around the tissue, forming small cubes, and remove the excess of agarose around the tissue.</li>
	<li>Place the agarose cubes in a cassette suitable for histological processing. 
	NOTE: The following steps can be done manually or in an automatic tissue processor.</li>
	<li>First, process the tissue in the cassette following the next steps for 45 min each at room temperature: one bath of 50% ethanol, one bath of 70% ethanol, two consecutive baths of 95% ethanol, and three consecutive baths of 100% ethanol. Afterward, process the tissue in two consecutive baths of Xylene and three consecutive baths of paraffin; the latter lasts 1 hour each at 60 &#176;C. 
	CAUTION: Make changes under a chemical hood, vapors from ethanol and xylene are irritant and toxic.</li>
	<li>To prepare paraffin blocks, melt paraffin lentils to 60 &#176;C.</li>
	<li>Open the plastic cassette with the tissue inside and keep it on a warm plate. Warm-up metal molds for the paraffin.</li>
	<li>With tweezers place the tissue over a metal mold so that the kidney length is parallel to the mold base. Add the paraffin, reallocate the tissue if necessary.</li>
	<li>Cover the mold with the base of the cassette and add paraffin until the grid is covered. Let solidify at room temperature and then place at -20 &#176;C for a faster solidification process.</li>
	<li>Release paraffin block from the metal mold around 20-30 min later.</li>
	<li>With a microtome, section the tissue embedded in paraffin to 5 &#181;m thickness. Use silanized or positively charged glass slides to collect the tissue.</li>
</ol>
4. TUNEL assay
NOTE: The following protocol uses an In Situ Cell Death Detection Kit (Table of Materials).
<ol>
	<li>Dewax tissue slides placing them in two consecutive baths of xylene for 5 min. Then rehydrate the tissue through a graded series of ethanol: 100%-95%-70%-50%, for 5 min each.</li>
	<li>Place slides in running cold tap water to rinse off the ethanol. Keep the slides in distilled water.</li>
	<li>Prepare a dark incubator chamber. Add wet paper towels on the bottom to keep the moisture during the incubation steps. 
	NOTE: In lack of an incubator chamber is possible to use a Petri dish with moist paper in the bottom and two toothpicks to place the slide.</li>
	<li>Prepare fresh Proteinase K working solution: 10 &#181;g/mL in 10 mM Tris/HCl, pH 7.4-8. 
	NOTE: Proteinase K is used as a permeabilization agent, as recommended by the fabricant.</li>
	<li>Place the slides in the dark incubator chamber and add Proteinase K working solution until cover samples. Incubate for 30 min at 37 &#176;C.</li>
	<li>While samples are incubating, prepare the TUNEL reaction mixture: Add 50 &#181;L of Enzyme Solution to 450 &#181;L Label Solution. Protect from light. 
	NOTE: The volume to be prepared can be adjusted in the same 1:10 proportion. The volume is calculated to be 50 &#181;L of the mixture for each section; this can change depending on the size of the samples.</li>
	<li>Pick up the dark chamber and wash the slides twice with 1x PBS.</li>
	<li>Next, dry the region around the sample using absorbent paper and add 50 &#181;L of TUNEL reaction mixture over each tissue slide, spread the solution so that the whole sample is covered. Incubate at 37 &#176;C for 2 h. Protect from light.</li>
	<li>After incubation, rinse the slide three times with 1x PBS and dry the region around the sample using paper towels.</li>
	<li>Add 50 &#181;L of DAPI 1:1000 to the samples, for nuclear counterstaining, and incubate for 5 min at room temperature. Protect from light.</li>
	<li>Rinse again three times with 1x PBS and dry the region around the sample.</li>
	<li>Mount the slide with an anti-fade hydrophilic medium, place a coverslip, and seal with nail polish. Store slides horizontally, protected from light at 4 &#176;C. 
	NOTE: The anti-fade properties of the mounting medium are to preserve the fluorescence of the samples but is possible to use any hydrophilic medium available. The final sealing step with nail polish is crucial to avoid dehydration.</li>
	<li>Visualize the samples under a fluorescence microscope. For this type of fluorescent pigment, use an excitation wavelength in the range of 520-560 nm (green) and detection in the range of 570-620 nm (red).</li>
</ol>

The authors have nothing to disclose.

The prevalence of kidney disease has continued to increase worldwide, becoming a global public health problem that affects millions of people63. Finding a way to treat kidney injured individuals is of paramount importance as well as understand more about their etiology and progression. Several studies have been using animal models to understand renal damage. The zebrafish kidney (Figure 1)&#160;has been studied for years in developmental biology and injury research because of its self-regenerating capacities and genetic similarity29,64. Here, we present a new AKI model in adult zebrafish using the properties of cisplatin as a nephrotoxic agent, detailing the steps for accomplishing a fast and acute reaction with damage visible as soon as 24 hpi (Figure 2). Moreover, here we explain two techniques that will help to the evaluation of the tissue damage after the cisplatin injection, flow cytometry and TUNEL (Figure 3).
Current AKI models in adult zebrafish include the i.p. injection of gentamicin which induces extensive damage in the nephron and tubule destruction, neonephrogenesis events start from day 5, and regeneration is completed by 21 days post-injection65. On the other hand, a model of sepsis-associated acute kidney injury (S-AKI) was established by the infection with Edwardsiella tarda, since significantly increased the expression of AKI markers, such as insulin-like growth factor-binding protein-7 (IGFBP7), tissue inhibitor of metalloproteinases 2 (TIMP-2), and kidney injury molecule-1 (KIM-1), in larvae and adult zebrafish66. The zebrafish is known for being a high-throughput animal for the search of therapeutic agents and this includes the use of probiotics and microbiota-derived metabolites to study kidney function and regeneration67. However, the available models could directly affect the outcome of these treatments. Thus, we established a different method to induce AKI in adult zebrafish (Figure 4), using cisplatin as a known nephrotoxic agent that would not have direct known effects on the fish microbiota, as would the gentamicin model for being an antibiotic, or the infection with E. tarda, for being a sepsis model. However, at the same time that we were developing our cisplatin protocol, another group also explored the nephrotoxic effects of cisplatin in adult zebrafish, simplifying the dose to 10-20-30 &#181;g per animal68. Although they also showed cisplatin dose-dependent effect in survival, we recommend caution in using a single quantity of cisplatin for all fishes, as zebrafish from the same age can have very different sizes and weight and this could induce variations in the results69,70. We think is important to adjust the dose to the corresponding weight of the animal, as is done in mice and this study.
In our experiments with adult zebrafish, cisplatin showed a dose-response effect. This was visualized by monitoring the survival rate of the animals after cisplatin injection (Figure 5). We used survival as a way of estimate the intensity of the dose of cisplatin and not as a measure of nephrotoxicity, as no other physical sign is visible during the monitoring time. This can be comparable with rodents, in which the severity of the kidney injury can be modulated by the dosage and frequency of cisplatin injection15, achieving lethal doses with higher concentrations of cisplatin71. Dead is also seen in the following days in the larval model of cisplatin72. Since our aim was to induce an acute injury in few days, we selected the 120 &#181;g/g dose of cisplatin as is possible to observe kidney damage 24 h after the injection, however, this can be adjusted depending on the objectives of the study.
In humans, AKI is clinically diagnosed by decreased glomerular filtration rate (GFR), elevated serum creatinine, and blood urea nitrogen3. In zebrafish, the repertoire of AKI models includes some genetic-conditional models73,74 and some drug-related models65,72, but as some of the AKI functional parameters cannot be measured on zebrafish because of technical difficulties (e.g., blood collection), most research adopts morphological and visual techniques to observe the features of AKI1,75 such as our study.
In rodents, cisplatin enters the epithelial cells in the proximal and distal tubules, inside the cell undergoes metabolic activation and becomes highly reactive acting on cell organelles and inducing changes in cell structure. These changes can induce apoptosis and autophagy and even necrosis, at very high doses. In response to this damage, many cytokines are released and leukocytes are recruited leading to inflammation and affecting the functionality of the organ15. This highlights the importance of assessing what type of cells can be found in the injured kidney, as residents or infiltrated immune cells. Here we showed how to assess this by flow cytometry, using the transgenic immune reporter lines available nowadays (Table 1). Cisplatin increased the percentage of neutrophils (mpo:GFP positive cells) in the kidney 24 h after the injection (Figure 6). In the case of the zebrafish, the kidney is the niche of HSCs that give rise to different blood cell types. Nonetheless, many granulocytes and macrophages are normally circulating in the blood. In our example, we used the mpo:GFP transgenic line that express GFP under the promoter of myeloperoxidase of neutrophils52. Original studies of the mpo:GFP transgenic line demonstrated expression of myeloperoxidase in different states of neutrophil maturation76 but our gate strategy focused on the granulocyte fraction that comprises mature cells coming from the blood52, this way our analysis include infiltrated cells and not resident cells. This is important to consider when isolating the desired cell population.
As explained above, apoptosis is the most classic marker of cisplatin-related AKI. Here, we demonstrated a simple protocol for the localization of dead cells by the TUNEL assay. Cisplatin injection increased the number of apoptotic cells 24 hpi (Figure 7). This can be easily quantified by counting directly the dead cells from the tissue. Nonetheless, for the identification of cell-specific death the use of antibodies against the desired cell (e.g., tubular cells), or the use of a transgenic reporter line can be used together with this technique. When compared with the gentamicin-induced model of AKI, cisplatin seems to be a more severe model, since gentamicin apoptosis was higher on the third day after injection65.
Despite having a variety of side effects, cisplatin is still widely used in cancer therapy, because of its effectiveness against various types of cancers, including carcinomas, germ cell tumors, lymphomas, and sarcomas77. Nephrotoxicity occurs in one-third of patients in treatment with cisplatin10, thus the search for strategies that can decrease this effect and increase renoprotection is imperative. We believe that the methods and techniques presented in this manuscript will help to elucidate mechanisms of kidney injury and find therapeutic targets that can be essential to improve the quality of life of individuals that suffer from renal complications, predominantly the ones related to the use of cisplatin.

The kidneys are responsible for several important physiological functions that maintain homeostasis, such as blood filtration, removal of excess residues, and regulation of ion concentrations1. Damage of renal tissue can lead to a heterogeneous condition called Acute Kidney Injury (AKI), which clinically is described as a rapid decrease in renal function caused by destruction and death of tubular epithelial cells, endothelial cell injury, and leukocyte infiltration 2,3. AKI is a condition projected to happen in 8-16% of hospital admissions4, with a high mortality rate that ranges from 20 to 50% in the intensive care unit (ICU)5. This ailment is associated with increased hospital stay and considerable use of financial resources5. Etiologic factors include dehydration, shock, infections, sepsis, cardiovascular disease, and nephrotoxic drugs6. Nephrotoxicity is defined as a renal injury induced by drugs, causing effects as AKI, tubulopathies, and glomerulopathies7. Nephrotoxicity affects two-thirds of ICU patients, as approximately 20% of the drugs prescribed in ICU are considered nephrotoxic8,9, this includes nonsteroidal anti-inflammatory drugs (NSAIDs), antibiotics such as vancomycin and aminoglycosides, and chemotherapeutic agents like methotrexate and cisplatin7. Cisplatin is one of the most potent and common chemotherapy drugs, used in the treatment of solid tumors, such as head and neck, testicular, ovarian, and bladder10. In the kidney, cisplatin is internalized in the proximal convoluted tube (PCT) through the organic cationic transporter 2 (OCT-2) and in high concentrations binds to the DNA triggering cell death pathways7,10,11,12. The accumulation of this drug in the kidney contributes to nephrotoxicity with death and inflammation13. This detrimental side effect affects enormously the life and prognosis of one-third of cancer patients undergoing cisplatin treatment, so is imperative the research of new therapies that can lower the nephrotoxicity without losing the killing effect on cancer cells10.
Because of this nephrotoxic effect, cisplatin is commonly used as an inductor of AKI in experimental animal models, as described forward. In rodents, the first AKI model induced by cisplatin was reported in 197114 but at present, many different protocols have emerged using the dose-dependent and cumulative effects of cisplatin15. Thereby, depending on the dosage and number of applications, different grades of severity of kidney injury can be induced16,17,18,19,20,21. The most frequent method consists of an intraperitoneal (i.p.) injection of one dose of cisplatin followed by euthanasia in the following days. In this classic protocol, a single high nephrotoxic dose of cisplatin (10-13 mg/kg in mice and/or 3-8 mg/kg in rats) induces severe histological changes, such as loss of brush border and cell debris inside the tubular lumen, a few days after cisplatin injection. The severity of histological changes is dose-dependent, and signs of regeneration are observed 7 days after cisplatin injection16,17.
Although rodent models are well established, we decided to take advantage of the characteristics of another vertebrate, focusing our studies on the zebrafish (Danio rerio). This fish has been extensively used for modeling human diseases, because of its small size, external fertilization, high reproduction rates, rapid development, transparency of the embryos and larvae, low maintenance cost, similar anatomy to mammals (with some exceptions), high tissue regeneration capacity, social behavior, 70% of genetic similarity with humans and 84% with human diseases-associated genes22. Streisinger et al.23,24,25 started the studies with zebrafish that confirmed the practicability of utilizing this model organism for the genetic analysis of vertebrate development. In kidney research, the zebrafish has emerged not only in developmental studies but also as a genetic tool in the search for new genes linked to kidney conditions26. Furthermore, the capacity of regeneration without scar formation and the ability to generate nephrons through their life, called neonephrogenesis, make the zebrafish a key animal model for regeneration research27,28. Moreover, the availability of experimental models for different kidney illness, including acute and chronic kidney injury, demonstrate the versatility of this experimental organism26,29. As in mammals, the renal progenitors of the zebrafish are derived from the intermediate mesoderm. Such renal progenitors generate the pronephros that will later develop to the mesonephros, which will be maintained as a mature organ until adulthood29,30.
The adult zebrafish kidney is located on the dorsal wall of the body, between the swim bladder and the backbone29. From a ventral view, the zebrafish can be segmented into three regions (Figure 1A): head (H), trunk (Tr), and tail (Ta)29. Same as mammals, the zebrafish has the nephrons as functional units of the kidney, which are divided into tubule segments (Figure 1A): renal corpuscle (RC), proximal convoluted tubule (PCT), proximal straight tubule (PST), distal early (DE), late distal (DL) and collecting duct (CD)29. Zebrafish shares genetic conservation and structural similarities with human nephrons (Figure 1B) but lacks some conformations such as the intermediate tubule, also known as the loop of Henle (LH)29,31. Freshwater fishes like zebrafish are normally surrounded by a medium with very low osmolarity, because of this, they tend to be hyperosmotic and depend on the gills, the skin at early stages, and the kidney to regulate osmolarity and water excretion32. The filtration of blood from the dorsal aorta by the pronephros begins around 48 h post-fertilization (hpf)33,34. The kidney of the zebrafish is not only a metabolic waste excretion organ but also works as a hematopoietic organ from 4 days post-fertilization (dpf) to adulthood and it is equivalent to the bone marrow in mammals35. During development, hematopoietic stem cells (HSCs) will seed the kidney, self-renovate, and generate myeloid, erythroid, and lymphoid cell lineages, maintaining transcription factors, signaling molecules, and highly conserved genetic programs with mammals36,37. Studies have revealed that most erythroid, thrombocytic, myeloid, and lymphoid cells of the human immune system are present in zebrafish37,38. The unique characteristics of this animal and the conserved features with the human kidney made this model organism advantageous in the research of kidney function, injury, and regeneration.
Although the kidney of the zebrafish is well studied and some models of AKI are already available in larva and adult zebrafish28, at the time of the establishment of this protocol there was no evidence of a chemically-induced non-antibiotic AKI model in adult zebrafish. Besides this, our laboratory focuses on testing probiotic bacteria and microbiota-derived compounds to study regeneration and renal damage, thus we concentrated our efforts in creating a new cisplatin-induced AKI model in adult fishes. The video article presented in this manuscript demonstrates the procedures for a new model of AKI induction using an i.p. injection of 120 ug cisplatin per g of animal (120 &#181;g/g) (Figure 2A). This dose was initially based on studies of AKI induced by cisplatin in murine models that went around 10 mg/kg (equivalent to 10 &#181;g/g)14,15,16,17, however, this dose was&#160;not sufficient to induce kidney damage related to nephrotoxicity (data not shown). Thus, we increased the dose to the ones used in this study (Figure 2B). Our work revealed a dose-dependent effect of cisplatin in survival rate after injection with induction of kidney tissue damage 24 hpi as shown by loss of tubular structure, increased inflammatory infiltrate, and high rate of cell death. Here, we describe two techniques for analyzing the development of cisplatin-induced AKI: flow cytometry, to analyze cell infiltration, and TUNEL, to measure cell death. Flow cytometry is a technology that measures the physical (size and granularity) and chemical (fluorescent compounds) characteristics of the cells. Inside the cytometer the cell suspension runs through a sheath fluid that organizes the cells in a single line, allowing them to pass through a laser beam one cell at a time (Figure 3A). A detector in front of the light beam will measure the Forward Scatter (FSC), which correlates with cell size, and detectors to the side will measure the Side Scatter (SSC) that correlates to the granularity of the cells. Other detectors will measure the fluorescence from particles, fluorescent-proteins, or antibody-labeled cells39,40. As commercial antibodies for zebrafish are scarce nowadays, the use of animal reporters and fluorescent biomarkers allows to improve this analysis and identify diverse cell populations41,42,43. Another tool used in this protocol was the Terminal deoxynucleotidyl transferase (TdT) dUTP Nick End Labeling (TUNEL) assay. The TUNEL assay is a late-stage apoptosis detection method that relies on the ability of the TdT to identify fragmented DNA and label it with deoxynucleotides tagged with a fluorescent marker that later can be visualized and quantified by microscopy44 (Figure 3B). Considering that one of the most striking features of AKI is the induction of apoptosis in tubular kidney cells3, this technique is extremely advantageous since it can be analyzed by flow cytometry and/or microscopy.
The approaches presented in this article allows the observation of the AKI status and offer a new acute model to study AKI disorders that can be useful for the research of new therapeutic targets in cisplatin-related AKI.

<table><tbody><tr><td>1x PBS</td><td></td><td></td><td>Made by diluting 10 X PBS (prepared in lab) in distilled water</td></tr><tr><td>31 G 1.0 cc insulin syringe</td><td>BD Plastipak</td><td>990256</td><td>Needle: BD Precision Glide 300110</td></tr><tr><td>3.5 L Fish tank</td><td>Tecniplast</td><td></td><td>Part of the aquactic system</td></tr><tr><td>6 well plate</td><td>Corning</td><td>351146</td><td></td></tr><tr><td>10 mM Tris/HCl</td><td></td><td></td><td>Prepared from solid Tris Base (Promega, H5135), adjusted to pH 7.4-8 with HCl (Merck, 1003171000)</td></tr><tr><td>50 ml Falcon tube</td><td>Corning</td><td>352070</td><td></td></tr><tr><td>2-3% Agarose</td><td>Invitrogen</td><td>16500-500</td><td>Dissolve 2 or 3% agarose (w/v) in 1x PBS, warm until dissolve.</td></tr><tr><td>2% FBS</td><td>Gibco</td><td>12657-09</td><td>Dilute 2% (w/v) directly in 1x PBS</td></tr><tr><td>4% Paraformaldehyde</td><td>Sigma-Aldrich</td><td>P6148-500G</td><td>Dissolve 4% PFA (w/v) in warm 1x PBS, mix until dissolve in a hot plate in a fume hood. Aliquot and store at -20 &amp;deg;C</td></tr><tr><td>50% Ethanol</td><td></td><td></td><td>Made by diluting 100% ethanol in distilled water</td></tr><tr><td>70% Ethanol</td><td></td><td></td><td>Made by diluting 100% ethanol in distilled water</td></tr><tr><td>90% Ethanol</td><td></td><td></td><td>Made by diluting 100% ethanol in distilled water</td></tr><tr><td>100% Ethanol</td><td>Synth</td><td>00A1115.01.BJ</td><td></td></tr><tr><td>100% Xylene</td><td>Synth</td><td>00X1001.11.BJ</td><td></td></tr><tr><td>Cell strainer 40 &amp;micro;m</td><td>Corning</td><td>431750</td><td></td></tr><tr><td>Cisplatin</td><td>Blau Farmac&amp;ecirc;utica</td><td>16020227</td><td>C-PLATIN 1 mg/mL. Store at room temperature.</td></tr><tr><td>Cork board sheet</td><td></td><td></td><td>Obtained from local stationary store</td></tr><tr><td>DAPI</td><td>Sigma-Aldrich</td><td>D9542</td><td>Stock solution 20 mg/ml dissolved in water</td></tr><tr><td>Fine forceps</td><td>Fine Science Tools</td><td>11254-20</td><td></td></tr><tr><td>Flow cytometry tubes</td><td>Corning</td><td>352052</td><td></td></tr><tr><td>Glass slide</td><td>Thermo-Fisher</td><td>4445</td><td></td></tr><tr><td>Histology cassette</td><td>Ciencor</td><td>2921</td><td></td></tr><tr><td>Immuno stain chamber</td><td>Ciencor</td><td>EP-51-05022</td><td></td></tr><tr><td>Incubator</td><td>NAPCO</td><td>5400</td><td>Set to 37 &amp;deg;C</td></tr><tr><td>Insect pins</td><td>Papillon</td><td></td><td>Model micro15x20</td></tr><tr><td>In Situ Cell Death Detection Kit</td><td>Roche Diagnostics</td><td>12156792910</td><td></td></tr><tr><td>Metal mold</td><td>Leica Biosystems</td><td>3803081</td><td></td></tr><tr><td>Micropipette 200-1000 &amp;micro;L</td><td>Eppendorf</td><td></td><td>Use 1 mL tips</td></tr><tr><td>MS-222 (Tricaine)</td><td>Fluka Analytical</td><td>A5040-25G</td><td></td></tr><tr><td>NaCl 0.9%</td><td>Synth</td><td>C1060.01.AG</td><td>Dissolve 0.9% NaCl (w/v) in distilled water</td></tr><tr><td>Nail polish</td><td></td><td></td><td>Prefer transparent</td></tr><tr><td>Neubauer chamber</td><td>Precicolor HGB</td><td></td><td></td></tr><tr><td>Pasteur plastic pipet</td><td>United Scientific Supplies</td><td>P31201</td><td></td></tr><tr><td>Paraplast</td><td>Sigma-Aldrich</td><td>P3558</td><td></td></tr><tr><td>Petri dish</td><td>J.ProLab</td><td>0307-1/6</td><td>60 and 100 mm</td></tr><tr><td>Plastic spoon</td><td></td><td></td><td>Obtained from local store</td></tr><tr><td>Proteinase K</td><td>New England BioLabs</td><td>P8102</td><td>Diluite from stock 20 mg/ml</td></tr><tr><td>Scissors</td><td>Fine Science Tools</td><td>14060-09</td><td></td></tr><tr><td>Scalpel blade</td><td>Solidor</td><td></td><td></td></tr><tr><td>Sponge</td><td></td><td></td><td>Obtained from local store</td></tr><tr><td>Trypan Blue</td><td>Cromoline</td><td>10621/07</td><td></td></tr><tr><td>Vannas Spring Scissors</td><td>Fine Science Tools</td><td>15000-00</td><td></td></tr><tr><td>Vectashield Antifade Mounting Medium</td><td>Vector Laboratories</td><td>H-1000-10</td><td></td></tr><tr><td>Centrifuge</td><td>Eppendorf</td><td>5810R</td><td></td></tr><tr><td>Cytometer</td><td>BD Biosciences</td><td>FACSCanto II</td><td></td></tr><tr><td>Fluorescence Stereoscope</td><td>Zeiss</td><td>Axio Zoom.V16</td><td></td></tr><tr><td>Fluorescence Microscope</td><td>Zeiss</td><td>AxioVert.A1</td><td></td></tr><tr><td>Microtome</td><td>Leica</td><td>Jung Supercut</td><td></td></tr><tr><td>Scale</td><td>Ohaus Corporation</td><td>AR2140</td><td></td></tr></tbody></table>

acute kidney injury model induced by cisplatin in adult zebrafish

Cisplatin is commonly used as chemotherapy. Although it has positive effects in cancer-treated individuals, cisplatin can easily accumulate in the kidney due to its low molecular weight. Such accumulation causes the death of tubular cells and can induce the development of Acute Kidney Injury (AKI), which is characterized by a quick decrease in kidney function, tissue damage, and immune cells infiltration. If administered in specific doses cisplatin can be a useful tool as an AKI inducer in animal models. The zebrafish has appeared as an interesting model to study renal function, kidney regeneration, and injury, as renal structures conserve functional similarities with mammals. Adult zebrafish injected with cisplatin shows decreased survival, kidney cell death, and increased inflammation markers after 24 h post-injection (hpi). In this model, immune cells infiltration and cell death can be assessed by flow cytometry and TUNEL assay. This protocol describes the procedures to induce AKI in adult zebrafish by intraperitoneal cisplatin injection and subsequently demonstrates how to collect the renal tissue for flow cytometry processing and cell death TUNEL assay. These techniques will be useful to understand the effects of cisplatin as a nephrotoxic agent and will contribute to the expansion of AKI models in adult zebrafish. This model can also be used to study kidney regeneration, in the search for compounds that treat or prevent kidney damage and to study inflammation in AKI. Moreover, the methods used in this protocol will improve the characterization of tissue damage and inflammation, which are therapeutic targets in kidney-associated comorbidities.

The kidney of the zebrafish is a flat pigmented organ located on the dorsal wall and its basic functional unit, the nephron, is conserved with mammals (Figure 1). The particularity of having just one kidney with a high capacity of regeneration makes this model organism an excellent choice for model kidney injury. The protocols presented in this work are designed to induce AKI by the intraperitoneal (i.p.) injection of cisplatin in adult zebrafish (Figure 2)&#160;and to later be analyzed by two techniques detailed before: flow cytometry (Figure 3A) and TUNEL (Figure 3B). A flowchart of the whole process is depicted in Figure 4. The doses of cisplatin were applied based initially on those described in mouse models15,16,17, in which the standard used is 10-13 mg of cisplatin per kg of animal (mg/kg). However, the zebrafish showed to be more resistant to cisplatin than the mouse (data not shown), and the final dose was increased. When we evaluated the survival rate of the animals, the experiments showed a dose-dependent effect of cisplatin (Figure 5A). Because of this, we recommend following the instructions exactly as explained in this protocol and monitor the survival rate of the animals constantly as a measure of reproducibility, before collecting any material. After the i.p. injection of 120 &#181;g/g cisplatin (Figure 5A, red line), a decrease in survival of around 30% of the animals was observed in the first 24 h and the survival decreased gradually until reaching around 20% of live animals on day 5 post-injection, then stabilized (Figure 5A). Cisplatin toxicity was not affected by the sex of the animals, since males and females have similar survival curves (Figure 5B).
Analysis of the kinetics of cisplatin-induced AKI showed increased inflammation and cell death in the kidney 24 hpi. One of the fastest and quantitative ways to evaluate inflammation is flow cytometry but given the lack of antibodies against zebrafish antigens available commercially for this technique, is necessary to use a transgenic line with an immune marker. Nowadays, many zebrafish lines labeling immune cells are accessible (Table 1). These lines can be singly used or in combination, given enough repertoire for analysis48,49,50,51,52,53,54,55,56,57,58,59,60. This simplifies enormously the technique since is not necessary any antibody incubation step, on the contrary, after the isolation of the cells by mechanical separation, the direct reading on the cytometer is possible.
As mentioned before, the kidney of the zebrafish is not only a blood filtration organ with homeostatic functions but also the anatomical site of hematopoiesis in adults, equivalent to the bone marrow in mammals33,34,35. This way when we analyze it by flow cytometry is possible to differentiate cell populations comparable to the human blood61,62 (Figure 6A), this allows us to identify the cell populations initially by size and granularity and exclude debris. In this case, we used a transgenic line called Tg(mpo:GFP)52 that expresses a green fluorescent protein (GFP) together with the enzyme myeloperoxidase, which is present in neutrophils. Knowing this, our gate strategy was based on the initial separation of the granulocyte&#39;s population (Figure 6B). Following this, doublet cells were excluded, since they can significantly alter the analysis and lead to inaccurate conclusions. A doublet is a single event that consists of 2 independent particles and can be excluded by selecting a forward scatter height (FSC-H) vs. a forward scatter area (FSC-A) density plot (Figure 6C). After this step, the cells that expressed the fluorescent marker were identified and selected (Figure 6D). Finally, the population statistics were extracted from the analysis and plotted as percentage of cells (Figure 6E).
One of the most prominent characteristics of cisplatin nephrotoxicity is tubular cell death10, and to easily visualize this we used the TUNEL assay for apoptosis detection. This method recommends using wild-type cells and tissues that lack fluorescent markers, since parallel fluorescence would interfere with the analysis, in the case of the zebrafish is recommended to use wild-type lines, such as AB, T&#252;bingen, TAB, or a transgenic line with a fluorescent protein that does not interfere with the TUNEL fluorescence color. The TUNEL technique allows the analysis via flow cytometry or microscopy. Microscopy has the advantage of conserving the tissue structure, allowing to see which cells are dying. Under the fluorescent microscope, the bright nuclei of apoptotic cells can be easily differentiated from the background. Animals injected with cisplatin (Figure 7B)&#160;have more dead cells than the control (Figure 7A) at 24 hpi. The final quantification was made with the cell-counter option of FIJI Software and showed statistically more dead cells in cisplatin-treated kidneys than in the controls (Figure 7C)
The protocol described in this manuscript showed how to use cisplatin as an inducer of AKI in adult zebrafish, which is dose-respondent, fast, and reliable. Based on the data obtained from survival rates and the measurement of signs of nephrotoxicity of cisplatin including inflammation (detected by flow cytometry) and cell death (detected by TUNEL assay), we propose this model for the study of cisplatin nephrotoxicity as well as for future treatments in AKI-related diseases.
<img alt="Figure 1" class="xfigimg" src="/files/ftp_upload/61575/61575fig01.jpg" /> 
Figure 1: Structure and comparison of zebrafish and human kidneys. A. (1) Lateral view of an adult zebrafish with the kidney represented in dark brown located in the dorsal wall of the fish, between the swim bladder (sb) and the backbone. (2) Ventral view of the kidney showing nephrons (yellow) connected to the collecting duct (blue). The different regions of the kidney are flagged: head (H), trunk (Tr), and tail (Ta). (3) Schematic representing zebrafish nephrons and their segments labeled and colored to match genetic conserved regions with human nephron. B. (1) Sagittal view of a human kidney. (2) Schematic depicting a human nephron with segments labeled and colored. RC: renal corpuscle; PCT: proximal convoluted tubule; PST: proximal straight tubule; TL: thin limb; LH: Loop of Henle; TAL: thick ascending limb; DE: distal early; DL: distal late; DCT: distal convoluted tubule; CD: collecting duct. <a href="https://www.jove.com/files/ftp_upload/61575/61575fig01large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 2" class="xfigimg" src="/files/ftp_upload/61575/61575fig02.jpg" /> 
Figure 2: Experimental design for cisplatin-induced AKI. A. Lateral and ventral view of adult zebrafish pointing the position of the needle during the injection procedure. The needle penetrates at a 20-30&#176; angle from the belly and is inserted slowly parallel to the ventral wall avoiding puncturing the viscera. B. Experimental design of cisplatin-induced AKI: (1) Injection of cisplatin 120 &#181;g/g per animal at day zero. (2) Before attempting step 3, survival monitoring of fishes after injection is recommended from day one until day ten. (3) Kidney dissections one day after cisplatin injection for further processing techniques. <a href="https://www.jove.com/files/ftp_upload/61575/61575fig02large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 3" class="xfigimg" src="/files/ftp_upload/61575/61575fig03.jpg" /> 
Figure 3: Mechanisms of flow cytometry and TUNEL techniques. A. Overview of the flow cytometer: a suspension of cells is hydrodynamically focused on a single line by a sheath fluid, causing cells to pass one by one in front of a laser beam. Detectors in front and on the side measure the forward scatter (FSC), side scatter (SSC), and fluorescence of the cells. B. Principle of TUNEL assay. Terminal deoxynucleotidyl transferase (TdT) mediates the addition of a fluorescent-marked dUTP to 3&#39;-OH ends of a fragmented DNA. <a href="https://www.jove.com/files/ftp_upload/61575/61575fig03large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 4" class="xfigimg" src="/files/ftp_upload/61575/61575fig04.jpg" /> 
Figure 4: Flowchart of represented techniques. A. A flowchart showing the steps to follow when choosing to analyze the kidney tissue through flow cytometry (orange) or TUNEL (blue), when inducing AKI by cisplatin injection (grey). <a href="https://www.jove.com/files/ftp_upload/61575/61575fig04large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 5" class="xfigimg" src="/files/ftp_upload/61575/61575fig05.jpg" /> 
Figure 5: Survival monitoring of cisplatin injected fish. A. Survival rate of different dosages of cisplatin injections (25 - 50 - 112.5 - 120 &#181;g/g). Log-rank (Mantel-Cox) test, ** p &#60; 0.01. B. Survival rate of males vs. females injected with 120 &#181;g/g cisplatin. Log-rank (Mantel-Cox) test, *** p &#60; 0.001. <a href="https://www.jove.com/files/ftp_upload/61575/61575fig05large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 6" class="xfigimg" src="/files/ftp_upload/61575/61575fig06.jpg" /> 
Figure 6: Gate strategy for transgenic zebrafish line. A. Density plot of zebrafish adult kidney cells, populations are separated by size (FSC-A) and granularity (SSC-A). Different populations are selected by colored ovals/circles. Pink: Erythroid; Black: Lymphoid; Yellow: Precursors; Red: Granulocytes. B. Density plot of side scatter area (SSC-A) and forward scatter area (FSC-A) for selection of Granulocytes population in the kidney. C. Density plot of forward scatter high (FSC-H) and forward scatter area (FSC-A) for selection of singlets population inside the granulocyte gate. D. Density plot of forward scatter area (FSC-A) and FITC-A:MPO for selection of mpo:GFP positive cells (neutrophils) in the kidney. A positive population is considered around 103 on, of fluorescence intensity. E. Graph of the percentage of mpo:GFP positive cells (neutrophils) in Control vs. Cisplatin animals, 24 hpi . Unpaired t-test. <a href="https://www.jove.com/files/ftp_upload/61575/61575fig06large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 7" class="xfigimg" src="/files/ftp_upload/61575/61575fig07.jpg" /> 
Figure 7: TUNEL assay of cisplatin injected fish. A. Microphotographs of fixed adult kidney 24 h after 120 &#181;g/g cisplatin injection. Controls are injected with 0.9% NaCl. TUNEL positive cells (apoptotic cells) are stained in red (white arrows). DAPI (blue) is used as a nuclear counterstain. Scale bar: 50 &#181;m. 20x magnification. B. Graph showing quantification of the number of dead cells in the kidney by 20x field. Unpaired t-test, * p &#60; 0.05. <a href="https://www.jove.com/files/ftp_upload/61575/61575fig07large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td>Transgenic Line</td>
			<td>Cell Type Labeled</td>
			<td>References</td>
		</tr>
		<tr>
			<td>Tg(spi1:EGFP)pA301</td>
			<td>Myeloid cells</td>
			<td>Ward et al. 200348</td>
		</tr>
		<tr>
			<td>Tg(zpu1:GFP)</td>
			<td>Myeloid cells</td>
			<td>Hsu et al. 200449</td>
		</tr>
		<tr>
			<td>Tg(mhc2dab:GFP)sd6</td>
			<td>Monocytes</td>
			<td>Wittamer et al. 201150</td>
		</tr>
		<tr>
			<td>Tg(lysC:DsRED2)</td>
			<td>Neutrophils</td>
			<td>Hall et al. 200751</td>
		</tr>
		<tr>
			<td>Tg(mpo:GFP)</td>
			<td>Neutrophils</td>
			<td>Mathias et al. 200652</td>
		</tr>
		<tr>
			<td>Tg(mpeg1:mCherry)</td>
			<td>Macrophages</td>
			<td>Ellett et al. 201153</td>
		</tr>
		<tr>
			<td>Tg(mpeg1:Dendra2)&#160;</td>
			<td>Macrophages</td>
			<td>Harvie et al. 201354</td>
		</tr>
		<tr>
			<td>Tg(lck:GFP)</td>
			<td>T-cells</td>
			<td>Langenau et al. 200455</td>
		</tr>
		<tr>
			<td>TgBAC(ikaros:EGFP)</td>
			<td>T-cells</td>
			<td>Bajoghli et al. 200956</td>
		</tr>
		<tr>
			<td>Tg(rag1:GFP)</td>
			<td>T-cells</td>
			<td>Jessen et al. 199957</td>
		</tr>
		<tr>
			<td>Tg(rag2:GFP)</td>
			<td>T-cells</td>
			<td>Jessen et al. 200158</td>
		</tr>
		<tr>
			<td>Tg (CD79:GFP)</td>
			<td>B-cells</td>
			<td>Liu et al. 201759</td>
		</tr>
		<tr>
			<td>Tg(CD45:DsRed)</td>
			<td>Leukocytes</td>
			<td>Bertrand et al. 200860</td>
		</tr>
	</tbody>
</table>
Table 1: Zebrafish transgenic lines for immune cells. Table resuming the names of zebrafish reporter lines with the respective type of immune cell labeled and the reference articles where they were constructed. A combination of these zebrafish lines can offer new possibilities of cell selection by flow cytometry.

Watch this Scientific Journal Video about Acute Kidney Injury Model Induced by Cisplatin in Adult Zebrafish at JoVE.com

Acute Kidney Injury Model Induced by Cisplatin in Adult Zebrafish

This protocol describes the procedures to induce Acute Kidney Injury (AKI) in adult zebrafish using cisplatin as a nephrotoxic agent. We detailed the steps to evaluate the reproducibility of the technique and two techniques to analyze inflammation and cell death in the renal tissue, flow cytometry and TUNEL, respectively.

Cisplatin is commonly used as chemotherapy. Although it has positive effects in cancer-treated individuals, cisplatin can easily accumulate in the kidney ...

acute-kidney-injury-model-induced-by-cisplatin-in-adult-zebrafish

Research

JoVE Journal

Medicine

5.6K Views.  University of São Paulo. Het algemene doel van deze procedure wordt verklaard het gebruik van cisplatine als nefrotoxisch middel bij volwassen zebravissen, het analyseren van ontsteking en celdood in nierweefsel. Om dit te bereiken en volwassen zebravissen worden verdoofd en gewogen om een specifieke dosis cisplatine in de buikholte te injecteren. Na monitor mortaliteit wordt de nier ontleed en worden de cellen geïsoleerd voor flowcytometrie of gefixeerd en ontleed om te worden geanalyseerd door fluorescerende TUNEL...

Video: Acute Kidney Injury Model Induced by Cisplatin in Adult Zebrafish

Kidney Regeneration in Adult Zebrafish by Gentamicin Induced Injury

The kidney is essential for fluid homeostasis, blood pressure regulation and filtration of waste from the body. The fundamental unit of kidney function is the nephron. Mammals are able to repair existing nephrons after injury, but lose the ability to form new nephrons soon after birth. In contrast to mammals, adult fish produce new nephrons (neonephrogenesis) throughout their lives in response to growth requirements or injury. Recently, lhx1a has been shown to mark nephron progenitor cells in the adult zebrafish kidney, however mechanisms controlling the formation of new nephrons after injury remain unknown. Here we show our method for robust and reproducible injury in the adult zebrafish kidney by intraperitoneal (i.p.) injection of gentamicin, which uses a noninvasive visual screening process to select for fish with strong but nonlethal injury. Using this method, we can determine optimal gentamicin dosages for injury and go on to demonstrate the effect of higher temperatures on kidney regeneration in zebrafish.

Here we present a reliable method to study adult kidney regeneration by inducing acute kidney injury by gentamicin injection. We show that injury is dependent on gentamicin dosage and environmental temperature using in situ hybridization to label lhx1a+ developing new nephrons.

The kidney is essential for fluid homeostasis, blood pressure regulation and filtration of waste from the body. The fundamental unit of kidney function is ...

Developmental Biology

Pressure Controlled Ventilation to Induce Acute Lung Injury in Mice

Murine models are extensively used to investigate acute injuries of different organs systems (1-34). Acute lung injury (ALI), which occurs with prolonged mechanical ventilation, contributes to morbidity and mortality of critical illness, and studies on novel genetic or pharmacological targets are areas of intense investigation (1-3, 5, 8, 26, 30, 33-36). ALI is defined by the acute onset of the disease, which leads to non-cardiac pulmonary edema and subsequent impairment of pulmonary gas exchange (36). We have developed a murine model of ALI by using a pressure-controlled ventilation to induce ventilator-induced lung injury (2). For this purpose, C57BL/6 mice are anesthetized and a tracheotomy is performed followed by induction of ALI via mechanical ventilation. Mice are ventilated in a pressure-controlled setting with an inspiratory peak pressure of 45 mbar over 1 - 3 hours. As outcome parameters, pulmonary edema (wet-to-dry ratio), bronchoalveolar fluid albumin content, bronchoalveolar fluid and pulmonary tissue myeloperoxidase content and pulmonary gas exchange are assessed (2). Using this technique we could show that it sufficiently induces acute lung inflammation and can distinguish between different treatment groups or genotypes (1-3, 5). Therefore this technique may be helpful for researchers who pursue molecular mechanisms involved in ALI using a genetic approach in mice with gene-targeted deletion.

A murine model for ventilator induced lung injury is an important tool to study an acute lung injury in vivo. Here, we report an easy applicable in situ model for acute lung injury using high-pressure mechanical ventilation to induce acute failure of the lung.

Murine models are extensively used to investigate acute injuries of different organs systems (1-34). Acute lung injury (ALI), which occurs with prolonged ...

The Spared Nerve Injury (SNI) Model of Induced Mechanical Allodynia in Mice

Peripheral neuropathic pain is a severe chronic pain condition which may result from trauma to sensory nerves in the peripheral nervous system. The spared nerve injury (SNI) model induces symptoms of neuropathic pain such as mechanical allodynia i.e. pain due to tactile stimuli that do not normally provoke a painful response [1]. 
The SNI mouse model involves ligation of two of the three branches of the sciatic nerve (the tibial nerve and the common peroneal nerve), while the sural nerve is left intact [2]. The lesion results in marked hypersensitivity in the lateral area of the paw, which is innervated by the spared sural nerve. The non-operated side of the mouse can be used as a control. The advantages of the SNI model are the robustness of the response and that it doesn&#x2019;t require expert microsurgical skills.
The threshold for mechanical pain response is determined by testing with von Frey filaments of increasing bending force, which are repetitively pressed against the lateral area of the paw [3], [4]. A positive pain reaction is defined as sudden paw withdrawal, flinching and/or paw licking induced by the filament. A positive response in three out of five repetitive stimuli is defined as the pain threshold. 
As demonstrated in the video protocol, C57BL/6 mice experience profound allodynia as early as the day following surgery and maintain this for several weeks.

The Spared Nerve Injury SNI Model of Induced Mechanical Allodynia in Mice

The Spared Nerve Injury animal model is described here as a mouse model of peripheral neuropathic pain following partial denervation of the sciatic nerve by lesioning the tibial and common peroneal nerve branches, leaving the remaining sural nerve intact. Behavioral modification resulting from mechanical allodynia is quantified by von Frey filaments.

Peripheral neuropathic pain is a severe chronic pain condition which may result from trauma to sensory nerves in the peripheral nervous system. The spared ...

Assessing Teratogenic Changes in a Zebrafish Model of Fetal Alcohol Exposure

Fetal alcohol syndrome (FAS) is a severe manifestation of embryonic exposure to ethanol. It presents with characteristic defects to the face and organs, including mental retardation due to disordered and damaged brain development. Fetal alcohol spectrum disorder (FASD) is a term used to cover a continuum of birth defects that occur due to maternal alcohol consumption, and occurs in approximately 4% of children born in the United States. With 50% of child-bearing age women reporting consumption of alcohol, and half of all pregnancies being unplanned, unintentional exposure is a continuing issue2. In order to best understand the damage produced by ethanol, plus produce a model with which to test potential interventions, we developed a model of developmental ethanol exposure using the zebrafish embryo. Zebrafish are ideal for this kind of teratogen study3-8. Each pair lays hundreds of eggs, which can then be collected without harming the adult fish. The zebrafish embryo is transparent and can be readily imaged with any number of stains. Analysis of these embryos after exposure to ethanol at different doses and times of duration and application shows that the gross developmental defects produced by ethanol are consistent with the human birth defect. Described here are the basic techniques used to study and manipulate the zebrafish FAS model.

In order to understand the molecular mechanisms of the ethanol-induced developmental damage, we have developed a zebrafish model of ethanol exposure and are exploring the physical, cellular, and genetic alterations that occur after ethanol exposure1. We then seek to find potential interventions and rapidly test them in this animal model.

Fetal alcohol syndrome (FAS) is a severe manifestation of embryonic exposure to ethanol. It presents with characteristic defects to the face and organs, ...

Precise Cellular Ablation Approach for Modeling Acute Kidney Injury in Developing Zebrafish

Acute Kidney Injury (AKI) is a common medical condition with a high mortality rate. With the repair abilities of the kidney, it is possible to restore adequate kidney function after supportive treatment. However, a better understanding of how nephron cell death and repair occur on the cellular level is required to minimize cell death and to enhance the regenerative process. The zebrafish pronephros is a good model system to accomplish this goal because it contains anatomical segments that are similar to the mammalian nephron. Previously, the most common model used to study kidney injury in fish was the pharmacological gentamicin model. However, this model does not allow for precise spatiotemporal control of injury, and hence it is difficult to study cellular and molecular processes involved in kidney repair. To overcome this limitation, this work presents a method through which, in contrast to the gentamicin approach, a specific Green Fuorescent Protein (GFP)-expressing nephron segment can be photoablated using a violet laser light (405 nm). This novel model of AKI provides many advantages that other methods of epithelial injury lack. Its main advantages are the ability to &#34;dial&#34; the level of injury and the precise spatiotemporal control in the robust in vivo animal model. This new method has the potential to significantly advance the level of understanding of kidney injury and repair mechanisms.

This work presents a new in vivo model of segmental kidney injury using kidney GFP transgenic zebrafish. The model allows for the induction of the targeted ablation of kidney epithelial cells to show the cellular mechanisms of nephron injury and repair.

Acute Kidney Injury (AKI) is a common medical condition with a high mortality rate. With the repair abilities of the kidney, it is possible to restore ...

Ischemia-reperfusion Model of Acute Kidney Injury and Post Injury Fibrosis in Mice

Ischemia-reperfusion induced acute kidney injury (IR-AKI) is widely used as a model of AKI in mice, but results are often quite variable with high, often unreported mortality rates that may confound analyses. Bilateral renal pedicle clamping is commonly used to induce IR-AKI, but differences between effective clamp pressures and/or renal responses to ischemia between kidneys often lead to more variable results. In addition, shorter clamp times are known to induce more variable tubular injury, and while mice undergoing bilateral injury with longer clamp times develop more consistent tubular injury, they often die within the first 3 days after injury due to severe renal insufficiency. To improve post-injury survival and obtain more consistent and predictable results, we have developed two models of unilateral ischemia-reperfusion injury followed by contralateral nephrectomy. Both surgeries are performed using a dorsal approach, reducing surgical stress resulting from ventral laparotomy, commonly used for mouse IR-AKI surgeries. For induction of moderate injury BALB/c mice undergo unilateral clamping of the renal pedicle for 26 min and also undergo simultaneous contralateral nephrectomy. Using this approach, 50-60% of mice develop moderate AKI 24 hr after injury but 90-100% of mice survive. To induce more severe AKI, BALB/c mice undergo renal pedicle clamping for 30 min followed by contralateral nephrectomy 8 days after injury. This allows functional assessment of renal recovery after injury with 90-100% survival. Early post-injury tubular damage as well as post injury fibrosis are highly consistent using this model.

We describe models of moderate and severe ischemia-reperfusion-induced kidney injury in which the mice undergo unilateral renal pedicle clamping followed by simultaneous or delayed contralateral nephrectomy, respectively. These models consistently give rise to renal dysfunction and post-injury fibrosis, but injury severity and survival are dependent on mouse background, age and surgical equipment.

Ischemia-reperfusion induced acute kidney injury (IR-AKI) is widely used as a model of AKI in mice, but results are often quite variable with high, often ...

Intravenous Microinjections of Zebrafish Larvae to Study Acute Kidney Injury

In this video article we describe a zebrafish model of AKI using gentamicin as the nephrotoxicant.  The technique consists of intravenous microinjections on 2 dpf zebrafish. This technique represents an efficient and rapid method to deliver soluble substances into the bloodstream of zebrafish larvae, allowing for the injection of 15-20 fish per hour. In addition to AKI studies, this microinjection technique can also be used for other types of experimental studies such as angiography.  We provide a detailed protocol of the technique from equipment required to visual measures of decreased kidney function. In addition, we also demonstrate the process of fixation, whole mount immunohistochemistry with a kidney tubule marker, plastic embedding and sectioning of the larval zebrafish. We demonstrate that zebrafish larvae injected with gentamicin show morphological features consistent with AKI: edema, loss of cell polarity in proximal tubular epithelial cells, and morphological disruption of the tubule.

We describe a technique of microinjecting the aminoglycoside, gentamicin, into 2 days post-fetilization (dpf) zebrafish larvae to induce acute kidney injury (AKI). We also describe a method for whole mount immunohistochemistry, plastic embedding and sectioning of zebrafish larvae to visualize the AKI mediated damage.

In this video article we describe a zebrafish model of AKI using gentamicin as the nephrotoxicant.  The technique consists of intravenous microinjections ...

Biology

Laser Ablation of the Zebrafish Pronephros to Study Renal Epithelial Regeneration

Acute kidney injury (AKI) is characterized by high mortality rates from deterioration of renal function over a period of hours or days that culminates in renal failure1. AKI can be caused by a number of factors including ischemia, drug-based toxicity, or obstructive injury1. This results in an inability to maintain fluid and electrolyte homeostasis. While AKI has been observed for decades, effective clinical therapies have yet to be developed. Intriguingly, some patients with AKI recover renal functions over time, a mysterious phenomenon that has been only rudimentally characterized1,2. Research using mammalian models of AKI has shown that ischemic or nephrotoxin-injured kidneys experience epithelial cell death in nephron tubules1,2, the functional units of the kidney that are made up of a series of specialized regions (segments) of epithelial cell types3. Within nephrons, epithelial cell death is highest in proximal tubule cells. There is evidence that suggests cell destruction is followed by dedifferentiation, proliferation, and migration of surrounding epithelial cells, which can regenerate the nephron entirely1,2. However, there are many unanswered questions about the mechanisms of renal epithelial regeneration, ranging from the signals that modulate these events to reasons for the wide variation of abilities among humans to regenerate injured kidneys.
The larval zebrafish provides an excellent model to study kidney epithelial regeneration as its pronephric kidney is comprised of nephrons that are conserved with higher vertebrates including mammals4,5. The nephrons of zebrafish larvae can be visualized with fluorescence techniques because of the relative transparency of the young zebrafish6. This provides a unique opportunity to image cell and molecular changes in real-time, in contrast to mammalian models where nephrons are inaccessible because the kidneys are structurally complex systems internalized within the animal. Recent studies have employed the aminoglycoside gentamicin as a toxic causative agent for study of AKI and subsequent renal failure: gentamicin and other antibiotics have been shown to cause AKI in humans, and researchers have formulated methods to use this agent to trigger kidney damage in zebrafish7,8. However, the effects of aminoglycoside toxicity in zebrafish larvae are catastrophic and lethal, which presents a difficulty when studying epithelial regeneration and function over time. Our method presents the use of targeted cell ablation as a novel tool for the study of epithelial injury in zebrafish. Laser ablation gives researchers the ability to induce cell death in a limited population of cells. Varying areas of cells can be targeted based on morphological location, function, or even expression of a particular cellular phenotype. Thus, laser ablation will increase the specificity of what researchers can study, and can be a powerful new approach to shed light on the mechanisms of renal epithelial regeneration. This protocol can be broadly applied to target cell populations in other organs in the zebrafish embryo to study injury and regeneration in any number of contexts of interest.

Acute kidney injury (AKI) in humans is a common clinical problem caused by damage to the epithelial cells that comprise kidney nephrons, and AKI is associated with high mortality rates of 50-70%1. Following epithelial cell destruction, nephrons have a limited ability to regenerate, though the mechanisms and limitations that guide this phenomenon remain poorly understood. In this video article, we describe our technique for targeted laser ablation of kidney nephron cells in the zebrafish embryo kidney, or pronephros. Our new method can be used to complement nephrotoxicity-induced models of AKI and gain a high-resolution understanding of the cell and molecular alterations that are associated with epithelial regeneration in the kidney nephron.

Acute kidney injury (AKI) is characterized by high mortality rates from deterioration of renal function over a period of hours or days that culminates in ...

Analysis of Nephron Composition and Function in the Adult Zebrafish Kidney

The zebrafish model has emerged as a relevant system to study kidney development, regeneration and disease. Both the embryonic and adult zebrafish kidneys are composed of functional units known as nephrons, which are highly conserved with other vertebrates, including mammals. Research in zebrafish has recently demonstrated that two distinctive phenomena transpire after adult nephrons incur damage: first, there is robust regeneration within existing nephrons that replaces the destroyed tubule epithelial cells; second, entirely new nephrons are produced from renal progenitors in a process known as neonephrogenesis. In contrast, humans and other mammals seem to have only a limited ability for nephron epithelial regeneration. To date, the mechanisms responsible for these kidney regeneration phenomena remain poorly understood. Since adult zebrafish kidneys undergo both nephron epithelial regeneration and neonephrogenesis, they provide an outstanding experimental paradigm to study these events. Further, there is a wide range of genetic and pharmacological tools available in the zebrafish model that can be used to delineate the cellular and molecular mechanisms that regulate renal regeneration. One essential aspect of such research is the evaluation of nephron structure and function. This protocol describes a set of labeling techniques that can be used to gauge renal composition and test nephron functionality in the adult zebrafish kidney. Thus, these methods are widely applicable to the future phenotypic characterization of adult zebrafish kidney injury paradigms, which include but are not limited to, nephrotoxicant exposure regimes or genetic methods of targeted cell death such as the nitroreductase mediated cell ablation technique. Further, these methods could be used to study genetic perturbations in adult kidney formation and could also be applied to assess renal status during chronic disease modeling.

The zebrafish adult kidney is an excellent system for renal regeneration and disease studies. An essential aspect of such research is the assessment of nephron structure and function. This protocol describes several methodologies that can be implemented to assess nephron tubule composition and to evaluate renal reabsorption.

The zebrafish model has emerged as a relevant system to study kidney development, regeneration and disease. Both the embryonic and adult zebrafish kidneys ...

Nephrotoxin Microinjection in Zebrafish to Model Acute Kidney Injury

The kidneys are susceptible to harm from exposure to chemicals they filter from the bloodstream. This can lead to organ injury associated with a rapid decline in renal function and development of the clinical syndrome known as acute kidney injury (AKI). Pharmacological agents used to treat medical circumstances ranging from bacterial infection to cancer, when administered individually or in combination with other drugs, can initiate AKI. Zebrafish are a useful animal model to study the chemical effects on renal function in vivo, as they form an embryonic kidney comprised of nephron functional units that are conserved with higher vertebrates, including humans. Further, zebrafish can be utilized to perform genetic and chemical screens, which provide opportunities to elucidate the cellular and molecular facets of AKI and develop therapeutic strategies such as the identification of nephroprotective molecules. Here, we demonstrate how microinjection into the zebrafish embryo can be utilized as a paradigm for nephrotoxin studies.

Renal injuries incurred from nephrotoxins, which include drugs ranging from antibiotics to chemotherapeutics, can result in complex disorders whose pathogenesis remains incompletely understood. This protocol demonstrates how zebrafish can be used for disease modeling of these conditions, which can be applied to the identification of renoprotective measures.

The kidneys are susceptible to harm from exposure to chemicals they filter from the bloodstream. This can lead to organ injury associated with a rapid ...

Acute Kidney Injury Model Induced by Cisplatin in Adult Zebrafish

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