This protocol describes in vitro cultivation of the syphilis pathogen Treponema pallidum subsp. pallidum in co-culture with mammalian cells. The method is scalable; it can be used to produce large quantities of T. pallidum and to generate clonal cultures.
For over a century, Treponema pallidum subsp. pallidum, the spiral-shaped bacterium that causes syphilis, could only be propagated by inoculation and harvest of the organisms from rabbit testes. In 2018, we described a method to continuously cultivate T. pallidumin vitro. This system utilizes co-culture with rabbit epithelial cells (Sf1Ep cells) in a serum-containing tissue culture medium called TpCM-2. The T. pallidum doubling time in culture is similar to that estimated to occur during natural infection (about 33-45 h). The organism can be cultured continuously with a standard passage time of 1 week in a low oxygen (1.5%) environment at 34 °C. This article contains the protocols for culturing T. pallidum, methods for growing and maintaining the required tissue culture cells, and the technique for generating isogenic strains by limiting dilution. The ability to grow T. pallidum in vitro provides new experimental avenues to study and understand this enigmatic organism.
Treponema pallidum is a species of spiral-shaped bacteria (called spirochetes) that causes syphilis and related infections in humans and other primates. Syphilis is a serious disease with long-term effects on infected individuals, and it is estimated that over 8 million new cases of syphilis occur worldwide each year1. T. pallidum has been subdivided into three subspecies based on the diseases they cause in humans as well as minor genetic differences: subspecies pallidum (which causes the sexually transmitted disease syphilis), subspecies pertenue (yaws), and subspecies endemicum (causing bejel or endemic syphilis)2,3. T. pallidum subsp. pertenue also causes infections in baboons, chimpanzees, and other primates. A closely related organism called Treponema paraluiscuniculi (also called Treponema paraluisleporidarum) causes an infection in rabbits and hares4,5. All of these bacteria are very closely related, with greater than 98% DNA sequence identity at the genome level6,7,8. They each have a single, small circular chromosome about 1.14 million base pairs (Mb) in size. The members of this T. pallidum group are found only in association with their mammalian hosts; as such, they are obligate pathogens that are dependent on their host species for survival and growth9,10.
Attempts to culture T. pallidum in vitro began shortly after its identification by Schaudinn and Hoffman in 190511,12. However, these efforts failed to lead to consistent, reproducible growth of the organism. As a result, T. pallidum research studies required propagation of the organism through the experimental infection of laboratory animals, most commonly the rabbit13,14. In 1981, Fieldsteel et al.15 introduced a tissue culture system that promoted the multiplication of T. pallidum strains for a period of up to 2 weeks. This system involved co-culture of T. pallidum with Sf1Ep cottontail rabbit epithelial cells in a modified tissue culture medium (T. pallidum Culture Medium 1, TpCM-1) based on Eagle's Minimum Essential Medium (MEM) and 20% fetal bovine serum (FBS). Other culture conditions required were incubation at 34 °C in an atmosphere containing 1.5% O2 and 5% CO29,16. In this system, T. pallidum attaches to the Sf1Ep cells and multiplies when in close association with the mammalian cell surface. Despite many subculture attempts and other modifications, the Fieldsteel et al. system failed to promote continuous in vitro growth.
In 2018, our laboratory reported that the use of a modified medium called TpCM-2 (in which Eagle's MEM was replaced with a more complex tissue culture medium, CMRL 1066) provided T. pallidum the required nutrients to permit consistent long-term culture17. To date, this modification has led to a consistent, continuous culture of at least 5 strains of T. pallidum subsp. pallidum (Nichols, SS14, Mexico A, UW231B, and UW249B) and one strain of T. pallidum subsp. endemicum (Bosnia A)18,19. As an example, the Nichols strain has now been cultured continuously in vitro for over 6 years. Thus far, attempts to culture yaws isolates (T. pallidum subsp. pertenue) or T. paraluiscuniculiin vitro have been unsuccessful18. The TpCM-2 system still requires the presence of Sf1Ep cells, low oxygen concentrations, and incubation at 34 °C, making the system more complex than most bacterial culture techniques. However, this modified T. pallidum culture system has been useful for further defining the bacterium's growth requirements18, determining minimal inhibitory concentrations (MICs) of antimicrobial compounds and peptides20,21,22,23,24,25, propagating new strains from patient tissue aspirates26, isolating clonal populations of the organism27, characterizing the tprK antigenic variation system27,28, examining gene expression29, and performing mutational analysis30,31,32.
Here, we describe the current methods for cultivating T. pallidum in vitro. We hope this information will help facilitate the more widespread application of this in vitro culture technique to the improved diagnosis, treatment, and prevention of syphilis and related treponemal infections.
NOTE: All steps require the use of an aseptic technique and sterile materials and reagents. Utilization of a tissue culture laminar flow hood is recommended to reduce both a) the exposure of personnel to infectious material and b) the possibility of microbial contamination of cultures.
1. Establishing Sf1Ep cell stocks
NOTE: Sf1Ep cottontail rabbit epithelial cells can be purchased as frozen stocks from the American Type Culture Collection (see Table of Materials). The slow-growing nature and low metabolic rate of Sf1Ep cells appear to be key to their ability to support the long-term survival and growth of T. pallidum33; therefore, substitution with other mammalian cell cultures is not recommended. Sf1Ep cells are not an immortalized cell line and can be maintained for only 25-30 passages in culture. Therefore, it is important to maintain a frozen stock of low-passage Sf1Ep cells for future use. Immortalized Sf1Ep lines occasionally arise during the long-term culture of Sf1Ep cells. (unpublished observations). These lines often grow faster and are easier to handle; however, sometimes, they lose the ability to support T. pallidum growth. Immortalized Sf1Ep lines can be used and then replaced when the spirochetes begin to grow slowly.
2. Passaging Sf1Ep cells
NOTE: Sf1Ep cell culture growth is monitored with an inverted microscope using phase contrast optics. Typically, the cells take about one week to reach near confluency. When the cells reach ~90% confluency, they can be passed, used for T. pallidum cultivation, or preparation of frozen stocks. The culture life can be extended to two weeks by replacement of one-half of the culture medium after one week of culture.
3. Cultivating T. pallidum
CAUTION: All T. pallidum subspecies and strains are pathogenic to humans and are classified as Biosafety Level 2 (BSL-2) Pathogens34. Appropriate measures are necessary to protect personnel; these include the use of gloves and other personal protective equipment (PPE) as well as disinfection of surfaces, materials, and liquids potentially exposed to T. pallidum. T. pallidum is readily inactivated by exposure to 70% ethanol or commercially available disinfectants. Consistent use of laminar flow hoods for handling specimens containing T. pallidum is recommended.
NOTE: T. pallidum is a microaerophilic organism that can be killed by a few hours of exposure to atmospheric levels of oxygen9,16,35. Therefore, it is recommended that the handling of T. pallidum in air be limited to less than an hour if possible. Also, the TpCM-2 medium should be pre-equilibrated in 1.5% O2, 5% CO2, balance N2, and vigorous stirring (e.g., use of a vortex) should be limited. Because T. pallidum culture is typically carried out in the absence of antibiotics, extra care is needed to avoid contamination with bacteria or fungi. The Sf1Ep-TpCM-2 procedure for culturing T. pallidum is summarized in Figure 1 and involves multiple steps, including the seeding of culture vessels with Sf1Ep cells, preparation of the TpCM-2 medium, and inoculation of the cultures with T. pallidum. Heat-inactivated fetal bovine serum (FBS) is a critical medium component, and its efficacy varies among different suppliers and lots19. Prescreening of FBS lots for efficacy is necessary.
4. Harvesting and passaging T. pallidum cultures
NOTE: Because the majority of T. pallidum in culture is attached to the surface of the Sf1Ep cells, it is necessary to dissociate the treponemes from the mammalian cells in order to retrieve them and obtain an accurate count of the organisms. Such 'harvesting' and passage to fresh cultures is typically done on day 7 of culture. The procedure described here is for 6-well plates; the amount of trypsin-EDTA solution used is adjusted up or down depending on the size of the culture format17,19,27.
5. Freezing and storing T. pallidum cultures
NOTE: T. pallidum can be stored indefinitely at or below -70 °C, with viability upon thawing typically being 50%-90%.
6. Generating isogenic clones of T. pallidum
NOTE: This procedure is described in detail in a prior study27.
Using the described conditions, T. pallidum typically retains>90% motility and multiplies logarithmically with a doubling time of 33 h to 45 h for approximately 7 days before entering the stationary phase (Figure 3). Over the course of 1 week, the spirochetes undergo approximately 4-5 doublings (Figure 4). ). In addition, different strains of T. pallidum may grow at different rates. Strains of the SS14 group of T. pallidum tend to have slower doubling times than those of the Nichols group17.
Feeding of cultures may extend culture time by several days but the Sf1Ep cell layer often fails after a week of culture. Furthermore, the treponemes reach an upper limit of organisms of about 5 x 107/mL. Cultures transferred at 7 day intervals typically continue logarithmic multiplication with little or no lag phase. Organisms in the stationary phase often become difficult to pass.
Most T. pallidum are attached to the Sf1Ep cells. However, enough T. pallidum remains in the supernatant that medium samples can be removed periodically to check for viability and multiplication. If careful quantitation is required, the volume of the removed medium should be measured, the number of T. pallidum quantitated, and the total number of organisms removed added to the final counts at harvest.
In previous studies, the cloning efficiency (number of cultures positive per organism inoculated) were 12.5% for 2 T. pallidum inoculated per well and 6.7% for 0.5 T. pallidum inoculated per well27. Thus, it is likely that any positive well represents the outgrowth of a single organism at either of these inocula. However, the clonality of the resulting populations must be verified by examining the culture for homogeneity at sites that are heterogeneous in the parent culture. The most definitive way to demonstrate that the culture is isogenic is through whole genome sequencing27.
Figure 1: Flow chart of the T. pallidumin vitro cultivation procedure. This figure has been reprinted with permission from Edmondson and Norris (2021)19. Please click here to view a larger version of this figure.
Figure 2: Diagram of the system to equilibrate T. pallidum culture reagents to a low-oxygen environment. A Brewer jar vent is connected via a T-joint to a vacuum source (such as a house vacuum) and to gas cylinders containing custom gas mixtures (5% CO2, balance nitrogen and 1.5% O2, 5% CO2, balance nitrogen). An in-line vacuum gauge measures the vacuum drawn in the jar. The vacuum is drawn in the jar to approximately -58 kPa. The evacuated jar is then slowly re-filled with the gas mixtures. The Brewer jar is refilled three times with 5% CO2, balance nitrogen before a final evacuation, and refilled with 95% N2, 5% CO2, 1.5% O2. Cultures or media are then removed from the jar and quickly transferred to the low-oxygen incubator. Alternately, the tubing between the Brewer jar and the first T-joint can be clamped tightly, the tubing disconnected from the T-joint, and the entire Brewer jar can be transferred to a 34 °C incubator. This figure has been reprinted with permission from Edmondson and Norris (2021)19. Please click here to view a larger version of this figure.
Figure 3: Growth curves of T. pallidum cultured with Sf1Ep cells with TpCM-2 medium. Parallel triplicate cultures were seeded with T. pallidum. Replicates were harvested at each time point; the results represent the mean + SEM for these cultures. (A) The changes in T. pallidum per culture and (B) percent motility are shown. This figure has been adapted with permission from Edmondson et al.18. Please click here to view a larger version of this figure.
Figure 4: Example of passage of in vitro culture of T. pallidum, Nichols strain. Parallel triplicate cultures were seeded with T. pallidum and passed weekly using a 1:20 dilution. The sawtooth plot shows the numbers of T. pallidum per culture and the number transferred to new cultures at each time point. Results represent the mean ± SEM for three biological replicates. Please click here to view a larger version of this figure.
Table 1: Medium volume and seeding ratios for culture vessels. Please click here to download this Table.
Table 2: Media for T. pallidum cultivation. All media should be filter sterilized after preparation. Sf1Ep medium may be stored at 4 °C for up to two months. TpCM-2 is typically made one day prior to use. The dissociation medium should be aliquoted and frozen. Please click here to download this Table.
The Sf1Ep-TpCM-2 system is the first available procedure that promotes the continuous in vitro culture of T. pallidum. The system is complex due to the extreme growth requirements of this organism: 1) complex nutritional needs because of limited biosynthetic capabilities; 2) a poorly understood requirement for small quantities of oxygen, despite high sensitivity to reactive oxygen species9,10,16,36; and 3) the current need for the presence of Sf1Ep cells. While it is tempting to 'cut corners' on the procedure, it is recommended that the steps be followed carefully until a successful long-term culture is achieved prior to trying modifications. As additional information about the metabolic requirements of T. pallidum accumulates, it may be possible to develop axenic conditions that do not require the presence of Sf1Ep cells. However, the in vitro growth rate will likely remain slow (with a minimum doubling time of 33 h to 46 h, depending on the strain)17,18, given that T. pallidum multiplies at an estimated doubling time of 30 h to 33 h even during mammalian infection37,38. As with any bacterial culture, it is recommended that low passage stocks be maintained and that experiments be carried out with T. pallidum cultures that are less than 10 passages from these stocks to avoid 'genetic drift' and associated phenotypic changes due to mutations.
Sf1Ep cells apparently provide essential nutrients or enzymatic activities to the treponemes. However, they also consume nutrients (such as glucose and oxygen) and may produce toxic conditions such as low pH9,16,39. Therefore, there is a balancing act between having sufficient Sf1Ep cells to support T. pallidum multiplication and preventing mammalian cell overgrowth and toxicity. High passage numbers of Sf1Ep cells tend to be faster growing and at times, lose the ability to support T. pallidum multiplication. As such, Sf1Ep passage number should be monitored, and cell stocks should be replaced with low-passage frozen preparations periodically. The presence of Sf1Ep cells also complicates the study of T. pallidum properties such as DNA, RNA, and protein content, and enzyme activities. Removal of the rabbit cells is possible to some extent using repeated low-speed centrifugation (100 x g for 5 min) or more effectively using Percoll or Hypaque gradients40,41. However, the gradient centrifugation methods are generally only effective with high numbers of T. pallidum. Alternative methods for propagating T. pallidum are limited to infection of laboratory animals such as rabbits13,14. This approach has ethical considerations and has become increasingly expensive; however, the rabbit model is very useful for studying T. pallidum pathogenesis and host immune responses. In addition, there are likely some differences in gene expression, growth or behavior of T. pallidum during in vitro culture and rabbit infection27.
At the time of this report, the Sf1Ep-TpCM-2 system has been established in at least 6 research groups in the United States and Europe and has resulted in 16 publications with topics ranging from T. pallidum basic biology and genetics to antimicrobial susceptibility. The value of in vitro culture in studying this enigmatic pathogen will likely increase with expanded usage and future improvements.
The authors have no conflicts of interest to disclose.
This work was supported by grant R01 AI141958 from the United States National Institutes of Health/NIAID. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Name | Company | Catalog Number | Comments |
0.5 M EDTA, pH 8.0 | Sigma | E8008 | |
10x Earle’s Balanced Salts, w/o Mg2+, Ca2+ | Gibco | 14155063 | |
15 and 50 mL conical sterile disposable centrifuge tubes | N/A | N/A | |
2 mL cryogenic vials | Corning | 430659 | |
6-well cell culture plates for T. pallidum cultivation | Falcon | 353046 | The plates must have low evaporation lids. |
70% ethanol | N/A | N/A | |
75 cm2 tissue culture flasks with vented caps | Corning | 43061U | |
93.5% nitrogen, 5% CO2, and 1.5% oxygen for pre-equilibrating medium and cultures | N/A | N/A | |
95% nitrogen and 5% CO2 for pre-equilibrating medium and cultures | N/A | N/A | |
96-well low evaporation clear, flat-bottom tissue culture-treated microplates | Corning Falcon | 353072 | |
Adjustable multi-channel pipette with 200 ul capacity | N/A | N/A | Optional, but very helpful for cloning |
Cell culture grade water | Sigma | W3500 | |
CMRL 1066 without L-Glutamine or Phenol Red | US Biological | C5900-03A | |
CO2 for tri-gas and tissue culture incubators | N/A | N/A | |
Cryogenic liquid nitrogen cell culture storage tank | N/A | N/A | |
D-glucose | Sigma-Aldrich | G6152 | |
Disposable filter units, 0.2 µm , > 100 mL capacity | N/A | N/A | |
Disposable pipets: 25 mL, 10 mL, 5 mL, aspirating | N/A | N/A | |
DL-Dithiothreitol | Sigma-Aldrich | D9779 | |
D-Mannitol | Sigma-Aldrich | M1902 | |
DMSO (sterile cell culture grade ) | Sigma-Aldrich | D2650 | |
Eagle’s MEM | Sigma-Aldrich | M4655 | |
Fetal bovine serum, heat inactivated | Sigma-Aldrich | F4135 | We highly recommend this product. Must pre-screen for T. pallidum culture compatibility if using a different brand or catalog number. |
Freezer with capability of maintaining -70 °C or -80 °C | N/A | N/A | For storage of T. pallidum; liquid nitrogen storage may be used instead |
Freezing medium (Sf1Ep medium + 10% [v/v] DMSO) | N/A | N/A | |
Gas cylinders with appropriate fittings | N/A | N/A | |
GasPak 150 vented anaerobic jar (Brewer Jar) | Fisher Scientific | 11-816 | |
Glycerol | N/A | N/A | |
Helber counting chambers with Thoma rulings | Hawksley Medical and Laboratory Equipment | For quantitating T. pallidum | |
Hemocytometer | N/A | N/A | For Sf1Ep cell quantitation |
Incubator tank switch | NuAire | NU-1550 TankGuard Automatic CO2 Incubator Tank Switch | Optional, but very helpful in maintaining appropriate O2 conditions. |
Inverted microscope with phase contrast optics | N/A | N/A | For viewing Sf1Ep cell cultures |
L-Glutamine | Sigma-Aldrich | G7513 | |
L-Histidine | Sigma-Aldrich | H6034 | |
MEM Non-Essential Amino Acids | Gibco | 11140-050 | |
Microscope with darkfield condensor | N/A | N/A | The microscope should have a 40x objective and 15x eyepieces. |
MOPS | Sigma-Aldrich | M3183 | |
Multi-channel adapter for aspirator | Integra | 155520 | Optional, but useful for cloning |
NaHCO3 (7.5%) | Sigma-Aldrich | S8761 | |
Nitrogen for tri-gas incubator | N/A | N/A | |
Resazurin | Sigma-Aldrich | R7017 | |
Sf1Ep (NBL-11) cells | American Type Culture Collection | CCL-68 | |
Sodium pyruvate | Sigma-Aldrich | S8636 | |
Sterile PBS (without calcium chloride and magnesium chloride) | Sigma-Aldrich | D8537 | |
Sterile reagent reservoirs, 50 or 100 mL size | N/A | N/A | |
T. pallidum sample, frozen or fresh | from a rabbit infection or in vitro culture | ||
Tissue culture incubator maintained at 37 °C, 5% CO2 | N/A | N/A | |
Tri-gas tissue culture incubator maintained at 34 °C, 5% CO2, 1.5% O2 | Thermofisher | Heracell™ VIOS 160i Tri-Gas CO2 Incubator | Optional; anaerobic jars may be used instead (see Ref. 17) |
Trypsin-EDTA solution | Sigma-Aldrich | T4049 | |
Vacuum source (e.g. house vacuum), vacuum tubing, vacuum gauge, and connectors | N/A | N/A | |
Water, suitable for cell culture, filter-sterilized, purified | Sigma-Aldrich | W3500 | Recommended for medium preparation; decreases culture variability |
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