This work was supported by DoD Grant PT074620 (SLJ) and NIH Grant R01NS245014 (SLJ).

1. Reagent preparation
<ol>
 <li>Thaw frozen Matrigel on wet ice, leaving enough time before the experiment (do not speed up the process by active warming). Matrigel is used to establish a 3D environment closely resembling an extracellular matrix conducive to the migration of cells. It provides cells with both a substrate and mechanical encasing. Matrigel is stored frozen at -20&deg;C. Prior to use, it should be gradually brought up to the temperature of 0-4&deg;C, i.e. thawed on wet ice or in a refrigerator. Matrigel irreversibly sets to form a gel in the temperature of incubation (37&deg;C). Therefore it is not recommended to speed up thawing by immersing the container in warm water.</li>
 <li>Protein fractions are prepared by isoelectric focusing (IEF) of the total protein extract from the cerebral cortex of postnatal day 0 (P0) ferret. After separation, the fractions are dialyzed overnight against 20mM Tris-HCl pH7.2 to clean the extracts from the focusing buffer constituents, which might be toxic to the tissue.</li>
 <li>Protein delivery system. Proteins extracted from the cerebral cortex are adsorbed on fluorescent latex beads which then slowly release the proteins to the environment.We found that the fluorescence feature helps in visual handling of microspheres and allows easy detection of even minimal spillovers from the site of bead deposit, when observed under fluorescent microscope.
 <ol class="lalpha">
 <li>Add 10&mu;l of fluorescent beads to 100-200&mu;l of protein solution</li>
 <li>Incubate for 30min in dark at RT on a shaker</li>
 <li>Spin the beads down in a bench centrifuge for 1hr at max speed</li>
 <li>Remove supernatant</li>
 <li>Re-suspend in a vortex using 10&mu;l of fresh medium</li>
 <li>Add 30&mu;l of Matrigel to the suspension, mix well, and place on ice.</li>
 </ol>
 </li>
<li>Buffers and media

<ol>
 <li>Prepare and filtration-sterilize artificial cerebrospinal fluid (aCSF; NaCl 124mM, NaHCO3 26mM, NaH2PO4 1.2mM, KCl 3.2mM, MgSO4 1.2mM, CaCl2 2.4mM, Glucose 10mM). Slush-freeze the aCSF beforehand, so it's ready at the time of tissue dissection. To make it, place a plastic flask filled with sterile aCSF in a -80&deg;C freezer. Monitor freezing every so often, so when a layer of ice builds up on the inside of wall, break it and mix with the fluid. Repeat until the flask contains mostly an icy slush. Buffer prepared this way not only supports tissue survival, but will also hold low temperature longer, and is mechanically less harmful to the tissue than chunky ice cubes.</li>
 <li>Prepare Neurobasal medium with N-2 and B-27 supplements added according to manufacturer's suggestions, as well as 1mg/100ml gentamycin, 2 mM L-glutamine, and 0.6 % glucose. Sterilize by filtration through a 0.22&mu;m membrane. Keep warm at 37&deg;C until use.</li>
</ol>
</li>
<li>Culture plates
 <ol class="lalpha">
 <li>Culture grade plastic six-well plates are prepared by dotting each well in its center with a small amount (about 2&mu;l) of cold Matrigel using 20&mu;l pipette tip, and placing an autoclaved round 18mm glass coverslip on each drop. Neither the plates nor the coverslips need to be otherwise culture treated. </li>
 </ol>
</li>
</ol>
2. Tissue preparation
<ol>
 <li>Obtaining the brain tissue
 <ol class="lalpha">
 <li>After deeply anesthetizing the animal with Euthasol, remove the brain and place it in ice-cold aCSF</li>
 <li>Separate the hemispheres with a scalpel and slice coronally at 500&mu;m using a device of choice, collecting slices into a small dish containing ice-cold aCSF</li>

 </ol>
 
 </li>
 
 <li>Making explants (use dissecting microscope)
 <ol class="a">
 <li>Identify slices containing the ganglionic eminences (GE) and trim regions of cortex that may curl over GE and interfere with further steps</li>
 <li>Press a Harris Uni-Core bore in the area close to ventricular surface of GE, retract a core containing predominantly a ventricular zone, and expel it with a plunger into the ice-cold medium (Fig.1). Three to four explants of 0.5 mm diameter can be made from the GE in single P0 ferret brain slice. Please note that in both rodents and ferrets, the medial and lateral GEs are fused at this age. If a core stays in the slice or is stuck to the plastic bottom of the dish, mobilize it by squirting aCSF with a pipette tip and transfer with a pipette into the dish containing cold Neurobasal medium. Keep the dish on wet ice.</li>
 <li>Transfer a batch of explants from the medium into a large drop of ice-cold Matrigel (about 0.25-0.5ml) placed in a separate dish, taking care to have the explants fully immersed and avoiding bubbles. Keep the dish on wet ice. The size of a batch depends on the speed of the workflow downstream.</li>
 
 </ol> 
 </li>
</ol>
3. Culture setup (use dissecting microscope)
<ol>
 <li>Always keep Matrigel and Matrigel-containing mixes on ice to avoid curing.</li>
 <li>Remix the bead suspension and place 1-2&mu;l or less of the bead suspension in ice-cold Matrigel in the center of a glass coverslip previously placed in a culture plate well using a 20&mu;l pipette tip. Let it set a little, avoid drying.</li>
 <li>Using a 20&mu;l pipette tip pick up 2 explants from the Matrigel drop and place them in the desired vicinity of the bead deposit (at least 1mm away from the edge of the deposit) symmetrically on the opposite sides. Let it set for no longer than 5min at room temperature. The right timing of steps b and c is critical. If the time is too short it will lead to incomplete gelling and components of the culture setup will move when they are covered with the final layer of Matrigel; if the time is too long it may result in over-drying of the gel and creation of physical barriers impeding the free movement of cells.</li>
<li>Cover the beads and the explant with a flat layer of about 30&mu;l of Matrigel, extending it beyond the explants (Fig.2). Let it set in the incubator for about 15 minutes.</li>
<li>Add 2ml of Neurobasal medium with supplements.</li>
<li>Incubate at 37&deg;C in 5% CO2/95% O2 monitoring migratory activity daily.</li>
</ol>
4. Live imaging
<ol>
 <li>After incubation for 3-4 days, review the culture plates and choose coverslips of interest. The explants should generate a radially uniform cloud of cells. Replace chosen coverslips into a fresh culture plate that will be used in live imaging.</li>
<li>Let the coverslips sit in the new plate over night. Before placing the plate on the microscope for imaging, in a cell culture hood, use a sterile spatula to move the coverslip in order to release any microbubbles that collect between the coverslip and the cell culture plate. Interference of bubbles will ruin the images. Move the coverslips to the center of the well.</li>
<li>To prevent evaporation, fill the space between wells with water.</li>
<li>Carefully transfer the plate from the cell culture hood to the microscope as to not move the coverslips from the center of the well.</li>
<li>Define an imaging scheme using imaging software. Due to the 3D nature of the culture setup the cells also move vertically, therefore it is important to collect Z-planes encompassing full depth of the migration cloud. The XY extent of the imaged area should also be set large enough to cover areas predicted to be populated by migrating cells during the course of recording, and to contain the bead deposit in order to record an angular orientation of the explant and migrating cells relative to the source of the protein. Also consider that the more imaged Z planes, or the more area covered, the more time it takes to record a cycle at a particular time point, forcing longer time intervals between samples and a loss of temporal resolution of cell tracking. In our case, using a 10x objective, the optimal scheme was a 3x3 tile recording for each of 10 Z-planes spaced every 20&mu;m, at intervals of 30min. We found 30 min intervals the longest that allows unequivocal identification of cells at consecutive time points, which is critical for reliable tracking of their movements.</li>
<li>Initiate time lapse imaging.</li>
<li>After the desired time, remove the plate and fix cultures in 4% phosphate-buffered paraformaldehyde. It can be used for further morphological and immunocytochemical analysis.</li>
</ol>
5. Analysis of movement
<ol>
 <li>Convert the recorded time series of images into a format most convenient for further processing, TIFF being the most portable one.</li> 
 <li>Track the movement of individual cells over time by recording XY coordinates. This can be done using freely available software like ImageJ (NIH) with a Manual Tracking plug-in, or any other commercial application such as ImagePro, Volicity or AutoQuant.</li>
 <li>Plot the tracks using Excel or in-house developed software.</li>
 <li>For each tracked cell calculate kinetic parameters such as average speed, curvature of path, directional variability over time, branching, deviation toward the source of proteins, etc. Calculations can be done in MS Excel or any equivalent spreadsheet. Our experience indicates however that it is far more productive to develop in-house scripts (using R, Matlab, Python, Perl or other, mostly Open Source languages), as they allow for more flexible customization and inclusion of more sophisticated analytical methods than those available in a basic installation of Excel.</li>

</ol>

6. Representative Results:

<img src="/files/ftp_upload/2583/2583fig1.jpg" alt="Figure 1"/> 
Figure 1. Diagram of the anatomical origin of explants. This is a drawing of a coronal slice of a hemisected ferret brain. The grey circles indicate the region from which the explants were taken. 
<img src="/files/ftp_upload/2583/2583fig2.jpg" alt="Figure 2"/> 
Figure 2. Diagram of a culture setup. The bead deposit is the source of proteins; the explants are placed to either side and all elements are covered with Matrigel.
<img src="/files/ftp_upload/2583/2583fig3.jpg" alt="Figure 3"/> 
Figure 3. Corresponding plots of cell tracks colored by quadrants (arrows point toward the bead deposit). The cell tracks on the right are migrating toward fraction D, which appears to attract cells; the cells on the left are migrating toward fraction A, which appears to repulse migrating cells. 
<img src="/files/ftp_upload/2583/2583fig4.jpg" alt="Figure 4"/> 
Figure 4. A) A series of images from selected timepoints showing a growing cloud of cells migrating out of an explant. An example cell, indicated by an arrow, is tracked through time as indicated below (scale bar 200&mu;m). This explant was visualized with live imaging for 38 h. Shown here are images of cells leaving the explant from the beginning of recording the images to the final image. B) The cell indicated in part A at the times indicated. The cell shows repetitive branching (scale bar 50&mu;m).

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Animal use:
All procedures involving animals were performed in accordance to the USUHS and NIH institutional guidelines and approved by the USUHS IACUC.

Here we present a simple system to study and analyze migratory behavior of neural cells in response to chemical cues. In vitro migration assays have been used to identify extracellular molecules affecting the locomotion of cells. Our paradigm ensures that each individual cell studied has a 3-dimensional (3D) environment with which to interact. It is a considerable advantage over cultures where cells migrating out of explants are forced to move on the flat surface of poly-D-lysine-coated coverslip, thus devoid of interactions with the extracellular matrix (e.g. Hirschberg et al. '10; 8. M&eacute;tin et al. '07). However with respect to the larger scale of tracking migrating cells, it remains 2-dimensional, as the cells are vertically constrained to the space between the glass coverslip on the bottom and the top surface of Matrigel, which is relatively thin compared to the horizontal freedom of migration. Such a setup allows for easier analysis of movement, which still remains essentially 2-dimensional. Similar 3D paradigms consisting of GE explants or re-aggregates of GE cells embedded in collagen or Matrigel, were previously employed, using aggregates of cells expressing a particular signaling protein as a source of chemical cues (e.g. Liodis et al. '07; Martini et al.. '09; N&oacute;brega-Pereira et al. '08; Wichterle et al. '03). The method presented here uses a slow release system in the form of latex beads with adhered proteins to allow for a sustained level in the local environment, which is higher than proteins added directly to the medium, making the system particularly suitable when the amount of available protein is limited or when a complex mixture of proteins is tested. The choice of beads is not limited to latex-based products, and includes also other materials, for example agarose beads, each with different characteristics. To further increase the density of the assay, we used two explants apposed to the beads deposit on opposite sides. To ensure a specific area of origin, we have used ganglionic eminence explants as a source of cells. We evaluated differences in medial and lateral portions of the ganglionic eminence, but did not see any differences. We should point out that this study uses ferrets; in this species the medial and lateral ganglionic eminences fuse earlier than in rodents (Poluch et al. '08). At the time the cultures were made (P0) the medial and lateral ganglionic eminences were fused, even though many cells populating the neocortex are still being generated and migrating. However, if a truly homogenous source of cells is preferred, a cell suspension can be prepared from the dissected tissue and directly mixed with the Matrigel, or alternatively spun down and a resulting pellet punched to make 'explants'. Use of enzymatic tissue digestion to prepare the cell suspension is discouraged, for even residual traces of proteolytic activity can liquefy Matrigel over the course of experiment. Also, a due diligence has to be applied to the timing of the culture setup. Although Matrigel requires a period of warming to polymerize, even a slightly extended period of exposure of small drops of Matrigel (as used in this protocol) to the air causes drying and results in a shell that is impenetrable to migrating cells and which cannot be erased by subsequent covering with fresh Matrigel.

<table border="1">
	<tbody> 
 <tr>
 	<th>Name of the reagent</th>
 <th>Company</th>
 <th>Catalogue number</td>
 <th>Comments (optional)</th>	
 </tr>
 <tr>
 	<td>Neurobasal Medium (1X), liquid</td>
 <td>Invitrogen</td>
 <td>21103-049</td>
 <td>&nbsp;</td>	
 </tr>
 <tr>
 	<td>N-2 Supplement (100X), liquid</td>
 <td>Invitrogen</td>
 <td>17502-048</td>
 <td>&nbsp;</td>	
 </tr>
 <tr>
 	<td>B-27 Supplement (50X)</td>
 <td>Invitrogen</td>
 <td>0080085-SA</td>
 <td>&nbsp;</td>	
 </tr>
 <tr>
 	<td>BD Matrigel Basement Membrane Matrix</td>
 <td>BD Biosciences</td>
 <td>354234</td>
 <td>&nbsp;</td>	
 </tr>
 <tr>
 	<td>Harris Uni-Core, 0.5mm size</td>
 <td>Electron Microscopy Sciences</td>
 <td>69036-05</td>
 <td>Punch bore</td>	
 </tr>
 <tr>
 	<td>Green Retrobeads IX</td>
 <td>Lumafluor, Inc.</td>
 <td>&nbsp;</td>
 <td>Latex microspheres</td>	
 </tr>
 
 </tbody>
</table>

migratory behavior of cells generated in ganglionic eminence cultures

Migration of cells is a common process that leads to the development and maturation of the vertebrate central nervous system (Hatten, '99). The cerebral cortex consists of two basic neuronal types: excitatory and inhibitory. These cells arise in distinct areas and migrate into the cortex along different routes (Pearlman et al., '98). Inhibitory interneurons migrate tangentially from subcortical sources, mostly from different regions of the ganglionic eminences (Gelman et al., '09; Xu et al., '04). Their movement requires precise spatiotemporal control imposed by environmental cues, to allow for the establishment of proper cytoarchitecture and connectivity in the cerebral cortex (Caviness &amp; Rakic, '78; Hatten, '90; Rakic, '90). To study the migratory behavior of cells generated in proliferative zones of the ganglionic eminences (GE) in newborn ferrets in vitro we used a 3 dimensional culture arrangement in a BD Matrigel Matrix. The culture setup consisted of two GE explants and a source of tested proteins extracted from the cerebral cortex and adsorbed on fluorescent latex Retrobeads IX positioned between the explants (Hasling et al., '03; Riddle et al., '97). After 2-3 days of culture, the cells start to appear at the edge of the explant showing a propensity to leave the tissue in a radial direction. Live imaging allowed observation of migratory patterns without the necessity of labeling or marking the cells. When exposed to fractions of the protein extract obtained from isochronic ferret cortex, the GE cells displayed different behaviors as judged by quantitative kinetic analysis of individual moving cells.

Watch this Scientific Journal Video about Migratory Behavior of Cells Generated in Ganglionic Eminence Cultures at JoVE.com

Migratory Behavior of Cells Generated in Ganglionic Eminence Cultures

Time lapse imaging of 3D tissue culture allows studying migratory behavior of individual cells originating from ganglionic eminence in reaction to fractionated protein extract from cerebral cortex.

Migration of cells is a common process that leads to the development and maturation of the vertebrate central nervous system (Hatten, '99). The cerebral ...

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