Nicole Stancel, Ph.D., ELS, of Scientific Publications at the Texas Heart Institute, provided editorial support. We also thank the following funding sources: the American Heart Association&#39;s National Center Scientist Development Grant (14SDG19840000 to J. Wang), the 2014 Lawrence Research Award from the Rolanette and Berdon Lawrence Bone Disease Program of Texas (to J. Wang), and the National Institutes of Health (DE026561 and DE025873 to J. Wang, DE016320 and DE019650 to R. Maxson).

1. Preparation Before O9-1 Cell Culture
NOTE: Basal media used for O9-1 cell culture must have been conditioned by Sandos inbred mice thioguanine/ouabain-resistant (STO) mouse fibroblast cells; therefore, STO cells need to be obtained and prepared as described below before starting O9-1 cell culture.
<ol>
	<li>Active STO cell culture
	<ol>
		<li>Prepare media for culturing active STO cells by making complete Dulbecco&#39;s modified Eagle&#39;s media (DMEM) with 7% fetal bovi...

<ol>
	<li>Achilleos, A., Trainor, P. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Neural+crest+stem+cells:+discovery,+properties+and+potential+for+therapy.">Neural crest stem cells: discovery, properties and potential for therapy.</a> Cell Research. 22 (2), 288-304 (2012).</li><li>Le Douarin, N. M., Dupin, E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Multipotentiality+of+the+neural+crest.">Multipotentiality of the neural crest.</a> Current Opinion in Genetics and Development. 13 (5), 529-536 (2003).</li><li>Santagati, F., Rijli, F. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Cranial+neural+crest+and+the+building+of+the+vertebrate+head.">Cranial neural crest and the building of the vertebrate head.</a> Nature Reviews. Neuroscience. 4 (10), 806-818 (2003).</li><li>Cordero, D. R., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Cranial+neural+crest+cells+on+the+move:+their+roles+in+craniofacial+development.">Cranial neural crest cells on the move: their roles in craniofacial development.</a> American Journal of Medical Genetics. Part A. 155 (2), 270-279 (2011).</li><li>Trainor, P. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Craniofacial+birth+defects:+The+role+of+neural+crest+cells+in+the+etiology+and+pathogenesis+of+Treacher+Collins+syndrome+and+the+potential+for+prevention.">Craniofacial birth defects: The role of neural crest cells in the etiology and pathogenesis of Treacher Collins syndrome and the potential for prevention.</a> American Journal of Medical Genetics. Part A. 152 (12), 2984-2994 (2010).</li><li>Bronner, M. E., Simoes-Costa, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+neural+crest+migrating+into+the+twenty-first+century.">The neural crest migrating into the twenty-first century.</a> Current Topics in Developmental Biology. , 115-134 (2016).</li><li>Zurkirchen, L., Sommer, L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Quo+vadis:+tracing+the+fate+of+neural+crest+cells.">Quo vadis: tracing the fate of neural crest cells.</a> Current Opinion in Neurobiology. 47, 16-23 (2017).</li><li>Sauka-Spengler, T., Bronner-Fraser, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+gene+regulatory+network+orchestrates+neural+crest+formation.">A gene regulatory network orchestrates neural crest formation.</a> Nature Reviews. 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W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Development+of+the+neural+crest:+achieving+specificity+in+regulatory+pathways.">Development of the neural crest: achieving specificity in regulatory pathways.</a> Current Opinion in Cell Biology. 18 (6), 698-703 (2006).</li><li>Dupin, E., Sommer, L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Neural+crest+progenitors+and+stem+cells:+from+early+development+to+adulthood.">Neural crest progenitors and stem cells: from early development to adulthood.</a> Developmental Biology. 366 (1), 83-95 (2012).</li><li>Henion, P. D., Weston, J. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Timing+and+pattern+of+cell+fate+restrictions+in+the+neural+crest+lineage.">Timing and pattern of cell fate restrictions in the neural crest lineage.</a> Development. 124 (21), 4351-4359 (1997).</li><li>Harris, M. L., Erickson, C. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Lineage+specification+in+neural+crest+cell+pathfinding.">Lineage specification in neural crest cell pathfinding.</a> Developmental Dynamics. 236 (1), 1-19 (2007).</li><li>Luo, R., Gao, J., Wehrle-Haller, B., Henion, P. D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Molecular+identification+of+distinct+neurogenic+and+melanogenic+neural+crest+sublineages.">Molecular identification of distinct neurogenic and melanogenic neural crest sublineages.</a> Development. 130 (2), 321-330 (2003).</li><li>Betters, E., Liu, Y., Kjaeldgaard, A., Sundstrom, E., Garcia-Castro, M. I. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Analysis+of+early+human+neural+crest+development.">Analysis of early human neural crest development.</a> Developmental Biology. 344 (2), 578-592 (2010).</li><li>Yang, S. Y., Beavan, M., Chau, K. Y., Taanman, J. W., Schapira, A. H. V. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+human+neural+crest+stem+cell-derived+dopaminergic+neuronal+model+recapitulates+biochemical+abnormalities+in+GBA1+mutation+carriers.">A human neural crest stem cell-derived dopaminergic neuronal model recapitulates biochemical abnormalities in GBA1 mutation carriers.</a> Stem Cell Reports. 8 (3), 728-742 (2017).</li><li>Ishii, M., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+stable+cranial+neural+crest+cell+line+from+mouse.">A stable cranial neural crest cell line from mouse.</a> Stem Cells and Development. 21 (17), 3069-3080 (2012).</li><li>Yumoto, K., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=TGF-beta-activated+kinase+1+(Tak1)+mediates+agonist-induced+Smad+activation+and+linker+region+phosphorylation+in+embryonic+craniofacial+neural+crest-derived+cells.">TGF-beta-activated kinase 1 (Tak1) mediates agonist-induced Smad activation and linker region phosphorylation in embryonic craniofacial neural crest-derived cells.</a> Journal of Biological Chemistry. 288 (19), 13467-13480 (2013).</li><li>Wang, J., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Yap+and+Taz+play+a+crucial+role+in+neural+crest-derived+craniofacial+development.">Yap and Taz play a crucial role in neural crest-derived craniofacial development.</a> Development. 143 (3), 504-515 (2016).</li><li>Heallen, T., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Hippo+pathway+inhibits+Wnt+signaling+to+restrain+cardiomyocyte+proliferation+and+heart+size.">Hippo pathway inhibits Wnt signaling to restrain cardiomyocyte proliferation and heart size.</a> Science. 332 (6028), 458-461 (2011).</li><li>Wang, J., Martin, J. F. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Hippo+pathway:+An+emerging+regulator+of+craniofacial+and+dental+development.">Hippo pathway: An emerging regulator of craniofacial and dental development.</a> Journal of Dental Research. 96 (11), 1229-1237 (2017).</li><li>Pan, D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+hippo+signaling+pathway+in+development+and+cancer.">The hippo signaling pathway in development and cancer.</a> Developmental Cell. 19 (4), 491-505 (2010).</li><li>Xiao, Y., Leach, J., Wang, J., Martin, J. F. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Hippo/Yap+signaling+in+cardiac+development+and+regeneration.">Hippo/Yap signaling in cardiac development and regeneration.</a> Current Treatment Options in Cardiovascular Medicine. 18 (6), 38 (2016).</li><li>Yu, F. X., Meng, Z., Plouffe, S. W., Guan, K. L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Hippo+pathway+regulation+of+gastrointestinal+tissues.">Hippo pathway regulation of gastrointestinal tissues.</a> Annual Review of Physiology. 77, 201-227 (2015).</li><li>Fu, V., Plouffe, S. W., Guan, K. L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+Hippo+pathway+in+organ+development,+homeostasis,+and+regeneration.">The Hippo pathway in organ development, homeostasis, and regeneration.</a> Current Opinion in Cell Biology. 49, 99-107 (2017).</li><li>Moya, I. M., Halder, G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+Hippo+pathway+in+cellular+reprogramming+and+regeneration+of+different+organs.">The Hippo pathway in cellular reprogramming and regeneration of different organs.</a> Current Opinion in Cell Biology. 43, 62-68 (2016).</li><li>Piccolo, S., Dupont, S., Cordenonsi, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+biology+of+YAP/TAZ:+hippo+signaling+and+beyond.">The biology of YAP/TAZ: hippo signaling and beyond.</a> Physiological Reviews. 94 (4), 1287-1312 (2014).</li><li>Bauer, D. E., Canver, M. C., Orkin, S. H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Generation+of+genomic+deletions+in+mammalian+cell+lines+via+CRISPR/Cas9.">Generation of genomic deletions in mammalian cell lines via CRISPR/Cas9.</a> Journal of Visual Experiments : JoVE. (95), e52118 (2015).</li><li>Ran, F. A., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Genome+engineering+using+the+CRISPR-Cas9+system.">Genome engineering using the CRISPR-Cas9 system.</a> Nature Protocols. 8 (11), 2281-2308 (2013).</li><li>Manderfield, L. J., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Hippo+signaling+is+required+for+Notch-dependent+smooth+muscle+differentiation+of+neural+crest.">Hippo signaling is required for Notch-dependent smooth muscle differentiation of neural crest.</a> Development. 142 (17), 2962-2971 (2015).</li><li>Hindley, C. J., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+Hippo+pathway+member+YAP+enhances+human+neural+crest+cell+fate+and+migration.">The Hippo pathway member YAP enhances human neural crest cell fate and migration.</a> Scientific Reports. 6, 23208 (2016).</li><li>Nejigane, S., Haramoto, Y., Okuno, M., Takahashi, S., Asashima, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+transcriptional+coactivators+Yap+and+TAZ+are+expressed+during+early+Xenopus+development.">The transcriptional coactivators Yap and TAZ are expressed during early Xenopus development.</a> International Journal of Developmental Biology. 55 (1), 121-126 (2011).</li><li>Grefte, S., Vullinghs, S., Kuijpers-Jagtman, A. M., Torensma, R., Von den Hoff, J. W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Matrigel,+but+not+collagen+I,+maintains+the+differentiation+capacity+of+muscle+derived+cells+in+vitro.">Matrigel, but not collagen I, maintains the differentiation capacity of muscle derived cells in vitro.</a> Biomedical Materials. 7 (5), 055004 (2012).</li><li>Kang, B. J., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Effect+of+matrigel+on+the+osteogenic+potential+of+canine+adipose+tissue-derived+mesenchymal+stem+cells.">Effect of matrigel on the osteogenic potential of canine adipose tissue-derived mesenchymal stem cells.</a> Journal of Veterinary Medical Science. 74 (7), 827-836 (2012).</li><li>Uemura, M., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Matrigel+supports+survival+and+neuronal+differentiation+of+grafted+embryonic+stem+cell-derived+neural+precursor+cells.">Matrigel supports survival and neuronal differentiation of grafted embryonic stem cell-derived neural precursor cells.</a> Journal of Neuroscience Research. 88 (3), 542-551 (2010).</li></ol>

The NCC is a versatile and key contributor to different tissues and organs during embryonic morphogenesis.The O9-1 cell line maintains its potential to differentiate into many different cell types and mimics the in vivo characteristics of NCCs, making it a useful in vitro tool for studying gene function and molecular regulation in NCCs. The different status of O9-1 cells may correspond to different neural crest progeny in vivo, depending on the culture conditions of O9-1 cells. O9-1 cells can b...

An erratum was issued for: <a href="https://www.jove.com/video/58346/culturing-and-manipulation-of-o9-1-neural-crest-cells">Culturing and Manipulation of O9-1 Neural Crest Cells</a>. The Protocol section was updated.
Step 2.1 was updated from:
Prepare basal media for O9-1 cell culture by adding the following in DMEM (final concentrations are indicated): 15% FBS, 0.1 mM minimum essential media (MEM) nonessential amino acids, 1 mM sodium pyruvate, 55 mM beta-mercaptoethanol, 100 U/mL penicillin, 100 U/mL streptomycin, 2 mM L-glutamine, 103 units/mL leukemia inhibitory factor (LIF; added immediately before use, do not add to stock bottle), and 25 ng/mL fibroblast growth factor-basic (bFGF; added immediately before use, do not add to stock bottle).
to:
Prepare basal media for O9-1 cell culture by adding the following in DMEM (final concentrations are indicated): 15% FBS, 0.1 mM minimum essential media (MEM) nonessential amino acids, 1 mM sodium pyruvate, 55 &#181;M beta-mercaptoethanol, 100 U/mL penicillin, 100 &#181;g/mL streptomycin, 2 mM L-glutamine, 103 units/mL leukemia inhibitory factor (LIF; added immediately before use, do not add to stock bottle), and 25 ng/mL fibroblast growth factor-basic (bFGF; added immediately before use, do not add to stock bottle).
Step 5.1.1 was updated from:
To prepare osteogenic differentiation media, dilute the following in alpha-MEM (final concentrations are indicated): 0.1 mM dexamethasone, 100 ng/mL bone morphogenetic protein 2 (BMP2), 50 &#181;g/mL ascorbic acid, 10 mM b-glycerophosphate, 10% FBS, 100 U/mL penicillin, and 100 mg/mL streptomycin.
to:
To prepare osteogenic differentiation media, dilute the following in alpha-MEM (final concentrations are indicated): 0.1 &#181;M dexamethasone, 100 ng/mL bone morphogenetic protein 2 (BMP2), 50 &#181;g/mL ascorbic acid, 10 mM b-glycerophosphate, 10% FBS, 100 U/mL penicillin, and 100 &#181;g/mL streptomycin.
Step 5.2.1 was updated from:
To prepare chondrocyte differentiation media, dilute the following in alpha-MEM (final concentrations are indicated): 5% fetal calf serum (FCS), 1% insulin-transferrin-selenium (ITS), 100 U/mL penicillin, 100 mg/mL streptomycin, 10 ng/mL transforming growth factor beta (TGF-b3), 50 mg/mL ascorbic acid, 10 ng/mL BMP2, 0.1 mM dexamethasone, and 1 mM sodium pyruvate.
to:
To prepare chondrocyte differentiation media, dilute the following in alpha-MEM (final concentrations are indicated): 5% fetal calf serum (FCS), 1% insulin-transferrin-selenium (ITS), 100 U/mL penicillin, 100 &#181;g/mL streptomycin, 10 ng/mL transforming growth factor beta (TGF-b3), 50 &#181;g/mL ascorbic acid, 10 ng/mL BMP2, 0.1 &#181;M dexamethasone, and 1 mM sodium pyruvate.
Step 5.4.1 was updated from:
To prepare glial cell differentiation media, dilute the following in DMEM/F12 (final concentrations are indicated): 1x B-27 supplement, 2 mM L-glutamine, 50 ng/mL BMP2, 100 U/mL penicillin, 100 mg/mL streptomycin, 50 ng/mL LIF, and 1% heat-inactivated FBS.
to:
To prepare glial cell differentiation media, dilute the following in DMEM/F12 (final concentrations are indicated): 1x B-27 supplement, 2 mM L-glutamine, 50 ng/mL BMP2, 100 U/mL penicillin, 100 &#181;g/mL streptomycin, 50 ng/mL LIF, and 1% heat-inactivated FBS.

An erratum was issued for: <a href="https://www.jove.com/video/58346/culturing-and-manipulation-of-o9-1-neural-crest-cells">Culturing and Manipulation of O9-1 Neural Crest Cells</a>. The Protocol section was updated.

Erratum: Culturing and Manipulation of O9-1 Neural Crest Cells

Neural crest cells (NCCs) are multipotent stem-like cells with a remarkable migratory ability and transient existence during embryonic development. NCCs originate between the surface ectoderm and the neural tube and migrate to other parts of the embryo during embryonic development1. Based on their functional domains, NCCs can be classified into several different types, including cranial, trunk, vagal, sacral, and cardiac NCCs. In addition, NCCs can differentiate into multiple cell lineages, such as smooth muscle cells, bone cells, and neurons, and give rise to various tissues2,3. The development of NCCs is characterized by a complex series of morphogenetic events that are fine-tuned by various molecular signals. Given the complex regulation of NCCs and their important contributions to numerous structures, the dysregulation of NCC development can commonly lead to congenital birth defects, which account for nearly 30% of all human congenital birth defects. Abnormalities during the neural crest development can lead to cleft lip/palate, flawed nose formation, syndromes, defects such as a defective cardiac outflow tract, or even infant mortality1,4,5,6,7. Understanding the molecular mechanisms of NCC development is important for developing treatments for diseases caused by defects in NCC development. With the use of various in vitro and in vivo approaches8,9,10,11,12,13,14,15, considerable progress has been made in NCC research. In vivo, animal models, including chickens, amphibians, zebrafish, and mice, have been used to investigate NCCs1. Furthermore, human embryos have been used to study the process of NCC migration in early human embryo development16. In vitro, cell models for NCCs, such as human NCCs that originated from patient subcutaneous fat, have been used to investigate Parkinson&#39;s disease17. The O9-1 NCC line, which was originally derived from mass cultures of endogenous NCCs isolated from E8.5 mouse embryos18, is a powerful cell model for studying NCCs. Importantly, under non-differentiating culture conditions, O9-1 cells are multipotent stem-like NCCs. However, under varying culture conditions, O9-1 cells can be differentiated into distinguished cell types, such as smooth muscle cells, osteoblasts, chondrocytes, and glial cells18. Given these properties, O9-1 cells have been broadly used for NCC-related studies, such as investigating the molecular mechanism of cranial-facial defects19,20.
Here, detailed protocols are provided for maintaining O9-1 cells, differentiating O9-1 cells into different cell types, and manipulating O9-1 cells by performing gene loss-of-function studies with CRISPR-Cas9 genome editing and small interfering RNA (siRNA)-mediated knockdown technologies. As a representative example, the use of O9-1 cells to study Yap and Taz loss-of-function is described. Yap and Taz are the downstream effectors of the Hippo signaling pathway, which plays a critical role in the cell proliferation, differentiation, and apoptosis. The Hippo pathway has also been shown to be important in the development and homeostasis of several different tissues and organs, as well as in the pathogenesis of different diseases20,21,22,23,24,25,26,27,28. The core components of Hippo signaling include the tumor suppressor sterile 20-like kinases Mst1/2, WW domain-containing Salvador scaffold protein, and the large tumor suppressor homolog (Lats1/2) kinases. Hippo signaling inhibits Yap and Taz activity and promotes their degradation in the cytoplasm. Without repression from Hippo, Yap and Taz can translocate into nuclei and function as transcriptional co-activators. We recently showed that specifically inactivating the Hippo signaling effectors Yap and Taz in mouse NCCs by using the Wnt1cre and Wnt1Cre2SOR drivers resulted in embryonic lethality at E10.5 with severe craniofacial defects20. We have also performed studies using O9-1 cells to investigate the role of Yap and Taz in NCCs. To study Yap and Taz function in NCC proliferation and differentiation, Yap and Taz knockdown cells were generated in O9-1 cells by using siRNA, and Yap knockout cells were generated by using CRISPR-Cas9 genome editing. The same gene loss-of-function strategies can be applied to different target genes in other pathways. In addition, gain-of-function studies and transfection assays can also be applied to O9-1 cells to study gene function and regulation. The protocols described here are intended to be used by investigators as guides for culturing O9-1 cells to maintain multipotent stemness, for differentiating O9-1 cells into other cell types under different culture conditions, and for studying gene function and the molecular mechanisms of NCCs.

<table>
	<tbody>
		<tr>
			<td>Active STO feeder cells</td>
			<td>ATCC</td>
			<td>ATCC CRL-1503</td>
			<td>Also available in mitomycin C-inactivated form, catalog # ATCC 56-X</td>
		</tr>
		<tr>
			<td>O9-1 mouse cranial neural crest cell line</td>
			<td>Millipore Sigma</td>
			<td>SCC049</td>
			<td></td>
		</tr>
		<tr>
			<td>DMEM, high glucose, no glutamine</td>
			<td>Gibco</td>
			<td>11960-044</td>
			<td></td>
		</tr>
		<tr>
			<td>DMEM, high glucose</td>
			<td>Hyclone</td>
			<td>SH30243.01</td>
			<td></td>
		</tr>
		<tr>
			<td>FBS (fetal bovine serum)</td>
			<td>Millipore Sigma</td>
			<td>ES-009-B</td>
			<td></td>
		</tr>
		<tr>
			<td>Penicillin - streptomycin</td>
			<td>Gibco</td>
			<td>15140-122</td>
			<td></td>
		</tr>
		<tr>
			<td>L-glutamine 200mM (100X)</td>
			<td>Gibco</td>
			<td>25030-081</td>
			<td></td>
		</tr>
		<tr>
			<td>Gelatin from porcine skin</td>
			<td>Sigma</td>
			<td>G1890</td>
			<td></td>
		</tr>
		<tr>
			<td>Trypsin-EDTA 0.25% in HBSS</td>
			<td>Genesee Scientific</td>
			<td>25-510</td>
			<td></td>
		</tr>
		<tr>
			<td>DPBS (Dulbecco&#39;s phosphate buffered saline) without calcium or magnesium</td>
			<td>Lonza</td>
			<td>17-512F</td>
			<td></td>
		</tr>
		<tr>
			<td>MEM non-essential amino acids (MEM NEAA) 100X</td>
			<td>Gibco</td>
			<td>11140-050</td>
			<td></td>
		</tr>
		<tr>
			<td>Sodium pyruvate (100mM)</td>
			<td>Gibco</td>
			<td>11360-070</td>
			<td></td>
		</tr>
		<tr>
			<td>2-Mercaptoethanol</td>
			<td>Sigma</td>
			<td>M-7522</td>
			<td></td>
		</tr>
		<tr>
			<td>ESGRO leukemia inhibitory factor (LIF) 106 unit/ml</td>
			<td>Millipore Sigma</td>
			<td>ESG1106</td>
			<td></td>
		</tr>
		<tr>
			<td>Recombinant human fibroblast growth factor-basic (rhFGF-basic)</td>
			<td>R&#38;D Systems</td>
			<td>233-FB-025</td>
			<td></td>
		</tr>
		<tr>
			<td>Mitomycin C</td>
			<td>Roche</td>
			<td>10107409001</td>
			<td></td>
		</tr>
		<tr>
			<td>Matrigel matrix</td>
			<td>Corning</td>
			<td>356234</td>
			<td></td>
		</tr>
		<tr>
			<td>DMSO (dimethylsulfoxide)</td>
			<td>Millipore Sigma</td>
			<td>MX1458-6</td>
			<td></td>
		</tr>
		<tr>
			<td>Lipofectamine RNAiMAX</td>
			<td>Thermo Fisher Scientific</td>
			<td>13778-075</td>
			<td></td>
		</tr>
		<tr>
			<td>Opti-MEM I (1X)</td>
			<td>Gibco</td>
			<td>31985-070</td>
			<td></td>
		</tr>
		<tr>
			<td>Minimum essential medium, alpha 1X with Earle&#39;s salts, ribonucleosides, deoxyribonucleosides, &#38; L-glutamine</td>
			<td>Corning</td>
			<td>10-022-CV</td>
			<td></td>
		</tr>
		<tr>
			<td>ON-TARGETplus Wwtr1 siRNA</td>
			<td>Dharmacon</td>
			<td>L-041057</td>
			<td></td>
		</tr>
		<tr>
			<td>ON-TARGETplus Non-targeting Pool</td>
			<td>Dharmacon</td>
			<td>D-001810</td>
			<td></td>
		</tr>
		<tr>
			<td>ON-TARGETplus Yap1 siRNA</td>
			<td>Dharmacon</td>
			<td>L-046247</td>
			<td></td>
		</tr>
		<tr>
			<td>FCS (fetal calf serum)</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>ITS (insulin-transferrin-selenium )</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>TGF-b3</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Ascorbic acid</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>BMP2 (bone morphogenetic protein 2)</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Dexamethasone</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>B-27 supplement</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
	</tbody>
</table>

culturing and manipulation of o9-1 neural crest cells

Neural crest cells (NCCs) are migrating multipotent stem cells that can differentiate into different cell types and give rise to multiple tissues and organs. The O9-1 cell line is derived from the endogenous mouse embryonic NCCs and maintains its multipotency. However, under specific culture conditions, O9-1 cells can differentiate into different cell types and be utilized in a wide range of research applications. Recently, with the combination of mouse studies and O9-1 cell studies, we have shown that the Hippo signaling pathway effectors Yap and Taz play important roles in neural crest-derived craniofacial development. Although the culturing process for O9-1 cells is more complicated than that used for other cell lines, the O9-1 cell line is a powerful model for investigating NCCs in vitro. Here, we present a protocol for culturing the O9-1 cell line to maintain its stemness, as well as protocols for differentiating O9-1 cells into different cell types, such as smooth muscle cells and osteoblasts. In addition, protocols are described for performing gene loss-of-function studies in O9-1 cells by using CRISPR-Cas9 deletion and small interfering RNA-mediated knockdown.

The goal of our knockdown and knockout experiments was to study the effects of Yap and Taz loss-of-function in O9-1 cells. Before the knockdown and knockout experiments, we have to make sure that prepare for basal media and culture O9-1 cells as described above (for example, basement membrane matrix needs to cover the whole plate as shown in Figure 1, and O9-1 cells recovered from liquid nitrogen as shown in Figure 2</st...

Watch this Scientific Journal Video about Culturing and Manipulation of O9-1 Neural Crest Cells at JoVE.com

Culturing and Manipulation of O9-1 Neural Crest Cells

O9-1 is a multipotent mouse neural crest cell line. Here we describe detailed step-by-step protocols for culturing O9-1 cells, differentiating O9-1 cells into specific cell types, and genetically manipulating O9-1 cells by using siRNA-mediated knockdown or CRISPR-Cas9 genome editing.

Neural crest cells (NCCs) are migrating multipotent stem cells that can differentiate into different cell types and give rise to multiple tissues and ...

The O9-1 cell line is a very useful tool for studying neural crest cells in vitro. It has a great potential for use in a wide range of application in various use of research. O9-1 cells have obvious advantages, such as easy access, and quickly obtaining sufficient cell numbers for experiments, making it a powerful method complimentary to in vitro studies of neural crest cells.To begin, prepare basal media for O9-1 cell culture, according to the text protocol. Then, filter the basal media, and wrap it in foil to protect it from the light. After this, collect conditioned basal media from an activated STO cells according to the text protocol.First, thaw an aliquot of basement membrane matrix on ice for two hours. Then, dilute the basement membrane matrix with filtered sterilized DMEM with 10%FBS to a final concentration of 0.5mg/ml. Coat the plate with the basement membrane matrix at room temperature for one hour.Then, aspirate the basement membrane matrix while tilting the plate. Dry the plates at 30 degrees Celsius for 30 minutes. When adding the basement membrane matrix to the plate, make sure the solution covered the well evenly to maintain cell characteristics and avoid unnecessary variation in between experiments.Recover O9-1 cells by placing a cryo-vial into a 37 degree Celsius water-bath. Slowly swirl the vial until the solution completely turns to liquid. After this, transfer the cell solution from the cryo-vial to a 15ml centrifuge tube.Add five volumes of DMEM with 10%FBS to the tube to re-suspend the cells. Centrifuge the cells for three minutes at 180 Gs.Then, aspirate the supernatent, taking care not to disturb the pellet. Next, re-suspend the pellet in conditioned basal media supplemented with LIF and BFGF.Seed the cells in a six well plate, and agitate the plate to seed the cells evenly. When agitating the plate, do so horizontally and vertically, as swirling the plate will cause the cells to concentrate towards the center. And allow those cells to attach and grow in a standard cell culture incubator overnight.Ensure the cells are attached before changing the media. When the O9-1 cells reach 80%confluency, thaw the basement membrane matrix and prepare a basement membrane matrix coated plate as described previously. Then add basal media supplemented with LIF and BFGF to the membrane matrix.Gently rinse the wells with 2ml of DPBS twice. Then, dissociate the cells with 1ml of 0.05%trypsin EDTA at 37 degrees Celsius for three minutes. Neutralize the trypsin with an equal amount of DMEM with 10%FBS by repeatedly pipetting the liquid over the whole surface of the well.Then, transfer the cell solution to a centrifuge tube. And centrifuge for three minutes at 180 Gs.Aspirate the supernatent without disturbing the pellet of cells. Next, resuspend the cell pellet by gently pippetting conditioned basal media supplemented with LIF and BFGF.Seed the cells to the coated plate as previously described. Then, allow the cells to attach and grow in a standard cell culture incubator. First, prepare the 2X freezing media according to the text protocol.Then, filter-sterilize the media. Rinse the walls of the plate with DPBS twice, pipetting gently to avoid losing cells. Next dissociate the cells with 0.05%trypsin EDTA at 37 degrees Celsius for three minutes.Neutralize the trypsin with an equal amount of 10%FBS and DMEM. Transfer the contents of the plate to a centrifuge tube, and centrifuge for three minutes at 180 Gs.Then, aspirate the supernatent and add 2ml of PBS to resuspend the pellet. Centrifuge the cell solution once more and aspirate the supernatent.Adjust the amount of basal media in the tube as needed, and add an equal amount of 2X freezing media. Next, transfer the cells to the labeled cryo vials. Place the cryo vials inside a polystyrene box with a lid to achieve a slow cooling rate at 80 degrees Celsius for at least 24 hours.To perform SIRNA knockdown in O9-1 cells, recover and seed the cells. Dilute liposomes in an appropriate volume of serum-free media. Then, dilute SIRNA in serum-free media according to the text protocol.After this, add the diluted SIRNA to the diluted liposomes, according to the manufacturer's instructions. Mix the solution by pipetting, and incubate for five minutes at room temperature. Next, add an appropriate volume of SIRNA lipid complex to the cells.Then, incubate the cells for 24 hours in a standard cell culture incubator. O9-1 cells can differentiate into different cell types under specific differentiation culture conditions. To differentiate O9-1 cells into osteoplasts, prepare osteogenic differentiation media according to the text protocol.Finally, detect the osteoplast marker osteocalcin in differentiated osteoplasts by immuno staining. To differentiate O9-1 cells into smooth muscle cells, culture them under differentiation media according to the text protocol, and evaluate the differentiation by smooth-muscle actin immuno staining. In this protocol, both knock out and knock down experiment to study Yap loss of function in O9-1 cells were performed.Under smooth muscle cell differentiation conditions, most wild type O9-1 cells gave rise to smooth muscle actin positive smooth muscle cells. Yap null cells however generally failed to differentiate into SMA positive smooth muscle cells. This indicates that Yap plays a critical role in the differentiation of neural crest cells into smooth muscle cells.While attempting this procedure, it's important to remember to handle the O9-1 cell line gently and carefully during the entire process. Make sure to dilute and use the basal membrane matrix properly, and use 0.05%trypsin for cell dissociation. Don't forget that during the preparation for O9-1 cell culture, working with mitomycin c can be extremely hazardous, and precautions such as wearing a lab coat and gloves should always be taken while performing this procedure.

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JoVE Journal

Genetics

9.5K ビュー.  Baylor College of Medicine. O9-1細胞株は、インビトロで神経堤細胞を研究するための非常に有用なツールです。それは研究の様々な使用の応用の広い範囲で使用するための大きな可能性を秘めている。O9-1細胞は、簡単にアクセスできるなどの明らかな利点を持ち、実験に十分な数の細胞を迅速に取得し、神経堤細胞のインビトロ研究に優れた強力な方法となっています。まず、テキストプロ?...

ビデオ: Culturing and Manipulation of O9-1 Neural Crest Cells

O9-1 is a multipotent mouse neural crest cell line. Here we describe detailed step-by-step protocols for culturing O9-1 cells, differentiating O9-1 cells into specific cell types, and genetically manipulating O9-1 cells by using siRNA-mediated knockdown or CRISPR-Cas9 genome...

sirna-mediated gene silencing in neural stem cells

This video demonstrates the use of small interfering RNA (siRNA) to silence specific genes of interest in neural stem cells and differentiate them into desired cell types using appropriate differentiation medium. This procedure enables the study of the critical role of specific genes in the differentiation process of neural stem...

siRNA-Mediated Gene Silencing in Neural Stem Cells

in vitro investigation of the effects of the hyaluronan-rich extracellular matrix on neural crest cell migration

In Vitro Investigation of the Effects of the Hyaluronan-Rich Extracellular Matrix on Neural Crest Cell Migration

This protocol outlines an in vitro migration experiment suitable for the functional analysis of the molecules involved in the in vivo migration of neural crest cells into the hyaluronan-rich extracellular...

In Vitro Investigation of the Effects of the Hyaluronan-Rich Extracellular Matrix on Neural Crest Cell Migration

an optimized o9-1/hydrogel system for studying mechanical signals in neural crest cells

An Optimized O9-1/Hydrogel System for Studying Mechanical Signals in Neural Crest Cells

Detailed step-by-step protocols are described here for studying mechanical signals in vitro using multipotent O9-1 neural crest cells and polyacrylamide hydrogels of varying stiffness.

modeling paracrine noncanonical wnt signaling in vitro

Modeling Paracrine Noncanonical Wnt Signaling In Vitro

The present study outlines a highly reproducible and tractable method to study paracrine noncanonical Wnt signaling events in vitro. This protocol was applied to evaluate the impact of paracrine Wnt5a signaling in murine neural crest cells and myoblasts.

Modeling Paracrine Noncanonical Wnt Signaling In Vitro

isolation and culture of neural crest cells from embryonic murine neural tube

Isolation and Culture of Neural Crest Cells from Embryonic Murine Neural Tube

Isolation of embryonic neural crest from the neural tube facilitates the use of in vitro methods for studying migration, self-renewal, and multipotency of neural...

dissection, culture and analysis of primary cranial neural crest cells from mouse for the study of neural crest cell delamination and migration

Dissection, Culture and Analysis of Primary Cranial Neural Crest Cells from Mouse for the Study of Neural Crest Cell Delamination and Migration

This protocol describes the dissection and culture of cranial neural crest cells from mouse models, primarily for the study of cell migration. We describe the live imaging techniques used and the analysis of speed and cell shape...

isolation and culture of neural crest stem cells from human hair follicles

Isolation and Culture of Neural Crest Stem Cells from Human Hair Follicles

This article presents a robust protocol for isolation and culture of neural crest stem cells from human hair...

feeder-free derivation of neural crest progenitor cells from human pluripotent stem cells

Feeder-free Derivation of Neural Crest Progenitor Cells from Human Pluripotent Stem Cells

Neural crest (NC) cells derived from human pluripotent stem cells (hPSC) have great potential for modeling human development and disease and for cell replacement therapies. Here, a feeder-free adaptation of the currently widely used in vitro differentiation protocol for the derivation of NC cells from hPSCs is...

preparation and morphological analysis of chick cranial neural crest cell cultures

Preparation and Morphological Analysis of Chick Cranial Neural Crest Cell Cultures

This versatile protocol describes the isolation of premigratory neural crest cells (NCCs) through the excision of cranial neural folds from chick embryos. Upon plating and incubation, migratory NCCs emerge from neural fold explants, allowing for assessment of cell morphology and migration in a simplified 2D environment.

production of chick embryo extract for the cultivation of murine neural crest stem cells

Production of Chick Embryo Extract for the Cultivation of Murine Neural Crest Stem Cells

To cultivate neural crest stem cells (NCSC) in vitro, a special medium (NCSCM) is required. Essential part of NCSCM is chick embryo extract (CEE). We here describe accurate techniques to produce a maximized amount of pure and high quality CEE, including details as the isolation, maceration, centrifugation, and filtration...

dual labeling of neural crest cells and blood vessels within chicken embryos using chickgfp neural tube grafting and carbocyanine dye dii injection

Dual Labeling of Neural Crest Cells and Blood Vessels Within Chicken Embryos Using ChickGFP Neural Tube Grafting and Carbocyanine Dye DiI Injection

Here we report dual labeling of neural crest cells and blood vessels using chickGFP neural tube intraspecies grafting combined with intra-vascular DiI injection. This experimental technique allows us to simultaneously visualize and study development of the NCC-derived (enteric) nervous system and the vascular system, during organogenesis.

Dual Labeling of Neural Crest Cells and Blood Vessels Within Chicken Embryos Using ChickGFP Neural Tube Grafting and Carbocyanine Dye DiI Injection

analysis of neural crest migration and differentiation by cross-species transplantation

Analysis of Neural Crest Migration and Differentiation by Cross-species Transplantation

An approach for analyzing migration and eventual fate of avian neural crest cells in quail-chick chimeric embryos is described. This method is a simple and straightforward technique for tracing neural crest cells during migration and differentiation that are otherwise difficult to distinguish within an unmanipulated chick...

live imaging of cell motility and actin cytoskeleton of individual neurons and neural crest cells in zebrafish embryos

Live Imaging of Cell Motility and Actin Cytoskeleton of Individual Neurons and Neural Crest Cells in Zebrafish Embryos

This protocol describes imaging of individual  neurons or neural crest cells in living zebrafish embryos.  This method is used to examine cellular behaviors and actin localization using fluorescence  confocal time-lapse...

isolation, culture, and adipogenic induction of neural crest original adipose-derived stem cells from periaortic adipose tissue

Isolation, Culture, and Adipogenic Induction of Neural Crest Original Adipose-Derived Stem Cells from Periaortic Adipose Tissue

We present a protocol for the isolation, culture, and adipogenic induction of neural crest derived adipose-derived stem cells (NCADSCs) from the periaortic adipose tissue of Wnt-1 Cre+/-;Rosa26RFP/+ mice. The NCADSCs can be an easily accessible source of ADSCs for modeling adipogenesis or lipogenesis in...

isolation and culturing of adult neural stem cells from the mouse subcallosal zone

The video demonstrates the process of isolating and culturing neural stem cells from the mouse brain&#39;s subcallosal zone. It involves dissecting tissue, enzymatic dissociation, and culturing them with differentiation factors to develop into mature neural...

Isolation and Culturing of Adult Neural Stem Cells from the Mouse Subcallosal Zone

manipulation of single neural stem cells and neurons in brain slices using robotic microinjection

Manipulation of Single Neural Stem Cells and Neurons in Brain Slices using Robotic Microinjection

This protocol demonstrates the use of a robotic platform for microinjection into single neural stem cells and neurons in brain slices. This technique is versatile and offers a method of tracking cells in tissue with high spatial...

evaluation and manipulation of neural activity using two-photon holographic microscopy

Evaluation and Manipulation of Neural Activity Using Two-Photon Holographic Microscopy

We developed a two-photon holographic microscope that can visualize, assess, and manipulate neural activity using high spatiotemporal resolution, with the aim of elucidating the pathogenesis of neuropsychiatric disorders that are associated with abnormal neural...

Under a dissecting microscope with low magnification, microdissect the SCZ from the white matter area of the cortex and the hippocampus with a bent 30-gauge needle. Then, remove the cortex regions above the SCZ, and place the dissected SCZ into cold PBS in a 35-millimeter Petri dish on...

culturing h9-embryonic stem cells for generation of human neural retina

Culturing H9-Embryonic Stem Cells for Generation of Human Neural Retina

Flow-sorting and Exome Sequencing of the Reed-Sternberg Cells of Classical Hodgkin Lymphoma

The Hodgkin Reed-Sternberg cells of classical Hodgkin lymphoma are sparsely distributed within a background of inflammatory lymphocytes and typically comprise less than 1% of the tumor mass. Material derived from bulk tumor contains tumor content at a concentration insufficient for characterization. Therefore, fluorescence activated cell sorting using eight antibodies, as well as side- and forward-scatter, is described here as a method of rapidly separating and concentrating with high purity thousands of HRS cells from the tumor for subsequent study. At the same time, because standard protocols for exome sequencing typically require 100-1,000 ng of input DNA, which is often too high, even with flow sorting, we also provide an optimized, low-input library construction protocol capable of producing high-quality data from as little as 10 ng of input DNA. This combination is capable of producing next-generation libraries suitable for hybridization capture of whole-exome baits or more focused targeted panels, as desired. Exome sequencing of the HRS cells, when compared against healthy intratumor T or B cells, can identify somatic alterations, including mutations, insertions and deletions, and copy number alterations. These findings elucidate the molecular biology of HRS cells and may reveal avenues for targeted drug treatments.

Here, we describe a combined flow cytometric cell sorting and low-input, next-generation library construction protocol designed to produce high-quality, whole-exome data from the Hodgkin Reed-Sternberg (HRS) cells of classical Hodgkin lymphoma (CHL).

The Hodgkin Reed-Sternberg cells of classical Hodgkin lymphoma are sparsely distributed within a background of inflammatory lymphocytes and typically ...

The Visual Colorimetric Detection of Multi-nucleotide Polymorphisms on a Pneumatic Droplet Manipulation Platform

A simple and visual method to detect multi-nucleotide polymorphism (MNP) was performed on a pneumatic droplet manipulation platform on an open surface. This approach to colorimetric DNA detection was based on the hybridization-mediated growth of gold nanoparticle probes (AuNP probes). The growth size and configuration of the AuNP are dominated by the number of DNA samples hybridized with the probes. Based on the specific size- and shape-dependent optical properties of the nanoparticles, the number of mismatches in a sample DNA fragment to the probes is able to be discriminated. The tests were conducted via droplets containing reagents and DNA samples respectively, and were transported and mixed on the pneumatic platform with the controlled pneumatic suction of the flexible PDMS-based superhydrophobic membrane. Droplets can be delivered simultaneously and precisely on an open-surface on the proposed pneumatic platform that is highly biocompatible with no side effect of DNA samples inside the droplets. Combining the two proposed methods, the multi-nucleotide polymorphism can be detected at sight on the pneumatic droplet manipulation platform; no additional instrument is required. The procedure from installing the droplets on the platform to the final result takes less than 5 min, much less than with existing methods. Moreover, this combined MNP detection approach requires a sample volume of only 10 &#181;l in each operation, which is remarkably less than that of a macro system.

This work presents a simple and visual method to detect multi-nucleotide polymorphisms on a pneumatic droplet manipulation platform. With the proposed method, the entire experiment, including droplet manipulation and detection of multi-nucleotide polymorphisms, can be performed near 23 &#176;C without the aid of advanced instruments.

A simple and visual method to detect multi-nucleotide polymorphism (MNP) was performed on a pneumatic droplet manipulation platform on an open surface. ...

Genetic Manipulation of the Plant Pathogen Ustilago maydis to Study Fungal Biology and Plant Microbe Interactions

Gene deletion plays an important role in the analysis of gene function. One of the most efficient methods to disrupt genes in a targeted manner is the replacement of the entire gene with a selectable marker via homologous recombination. During homologous recombination, exchange of DNA takes place between sequences with high similarity. Therefore, linear genomic sequences flanking a target gene can be used to specifically direct a selectable marker to the desired integration site. Blunt ends of the deletion construct activate the cell&#39;s DNA repair systems and thereby promote integration of the construct either via homologous recombination or by non-homologous-end-joining. In organisms with efficient homologous recombination, the rate of successful gene deletion can reach more than 50% making this strategy a valuable gene disruption system. The smut fungus Ustilago maydis is a eukaryotic model microorganism showing such efficient homologous recombination. Out of its about 6,900 genes, many have been functionally characterized with the help of deletion mutants, and repeated failure of gene replacement attempts points at essential function of the gene. Subsequent characterization of the gene function by tagging with fluorescent markers or mutations of predicted domains also relies on DNA exchange via homologous recombination. Here, we present the U. maydis strain generation strategy in detail using the simplest example, the gene deletion.

Genetic Manipulation of the Plant Pathogen Ustilago maydis to Study Fungal Biology and Plant Microbe Interactions

We describe a robust gene replacement strategy to genetically manipulate the smut fungus Ustilago maydis. This protocol explains how to generate deletion mutants to investigate infection phenotypes. It can be extended to modify genes in any desired way, e.g., by adding a sequence encoding a fluorescent protein tag.

Gene deletion plays an important role in the analysis of gene function. One of the most efficient methods to disrupt genes in a targeted manner is the ...

Immunostaining for DNA Modifications: Computational Analysis of Confocal Images

For several decades, 5-methylcytosine (5mC) has been thought to be the only DNA modification with a functional significance in metazoans. The discovery of enzymatic oxidation of 5mC to 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC) and 5-carboxylcytosine (5caC) as well as detection of N6-methyladenine (6mA) in the DNA of multicellular organisms provided additional degrees of complexity to the epigenetic research. According to a growing body of experimental evidence, these novel DNA modifications may play specific roles in different cellular and developmental processes. Importantly, as some of these marks (e. g. 5hmC, 5fC and 5caC) exhibit tissue- and developmental stage-specific occurrence in vertebrates, immunochemistry represents an important tool allowing assessment of spatial distribution of DNA modifications in different biological contexts. Here the methods for computational analysis of DNA modifications visualized by immunostaining followed by confocal microscopy are described. Specifically, the generation of 2.5 dimension (2.5D) signal intensity plots, signal intensity profiles, quantification of staining intensity in multiple cells and determination of signal colocalization coefficients are shown. Collectively, these techniques may be operational in evaluating the levels and localization of these DNA modifications in the nucleus, contributing to elucidating their biological roles in metazoans.

Newly discovered oxidized forms of 5-methylcytosine (oxi-mCs), 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC) and 5-carboxylcytosine (5caC) may represent distinct DNA modifications with unique functional roles. Here a semi-quantitative workflow for visualization of oxi-mCs' spatial distribution, signal intensity profiling and colocalization is described.

For several decades, 5-methylcytosine (5mC) has been thought to be the only DNA modification with a functional significance in metazoans. The discovery of ...

Embryo Microinjection and Transplantation Technique for Nasonia vitripennis Genome Manipulation

The jewel wasp Nasonia vitripennis has emerged as an effective model system for the study of processes including sex determination, haplo-diploid sex determination, venom synthesis, and host-symbiont interactions, among others. A major limitation of working with this organism is the lack of effective protocols to perform directed genome modifications. An important part of genome modification is delivery of editing reagents, including CRISPR/Cas9 molecules, into embryos through microinjection. While microinjection is well established in many model organisms, this technique is particularly challenging to perform in N. vitripennis primarily due to its small embryo size, and the fact that embryonic development occurs entirely within a parasitized blowfly pupa. The following procedure overcomes these significant challenges while demonstrating a streamlined, visual procedure for effectively removing wasp embryos from parasitized host pupae, microinjecting them, and carefully transplanting them back into the host for continuation and completion of development. This protocol will strongly enhance the capability of research groups to perform advanced genome modifications in this organism.

Embryo Microinjection and Transplantation Technique for Nasonia vitripennis Genome Manipulation

Microinjection of Nasonia vitripennis embryos is an essential method for generating heritable genome modifications. Described here is a detailed procedure for microinjection and transplantation of Nasonia vitripennis embryos, which will greatly facilitate future genome manipulation in this organism.

The jewel wasp Nasonia vitripennis has emerged as an effective model system for the study of processes including sex determination, haplo-diploid sex ...

Highly Efficient Gene Disruption of Murine and Human Hematopoietic Progenitor Cells by CRISPR/Cas9

Advances in the hematopoietic stem cell (HSCs) field have been aided by methods to genetically engineer primary progenitor cells as well as animal models. Complete gene ablation in HSCs required the generation of knockout mice from which HSCs could be isolated, and gene ablation in primary human HSCs was not possible. Viral transduction could be used for knock-down approaches, but these suffered from variable efficacy. In general, genetic manipulation of human and mouse hematopoietic cells was hampered by low efficiencies and extensive time and cost commitments. Recently, CRISPR/Cas9 has dramatically expanded the ability to engineer the DNA of mammalian cells. However, the application of CRISPR/Cas9 to hematopoietic cells has been challenging, mainly due to their low transfection efficiencies, the toxicity of plasmid-based approaches and the slow turnaround time of virus-based protocols.
A rapid method to perform CRISPR/Cas9-mediated gene editing in murine and human hematopoietic stem and progenitor cells with knockout efficiencies of up to 90% is provided in this article. This approach utilizes a ribonucleoprotein (RNP) delivery strategy with a streamlined three-day workflow. The use of Cas9-sgRNA RNP allows for a hit-and-run approach, introducing no exogenous DNA sequences in the genome of edited cells and reducing off-target effects. The RNP-based method is fast and straightforward: it does not require cloning of sgRNAs, virus preparation or specific sgRNA chemical modification. With this protocol, scientists should be able to successfully generate knockouts of a gene of interest in primary hematopoietic cells within a week, including downtimes for oligonucleotide synthesis. This approach will allow a much broader group of users to adapt this protocol for their needs.

A protocol for fast CRISPR/Cas9-mediated gene disruption in mouse and human primary hematopoietic cells is described in this article. Cas9-sgRNA ribonucleoproteins are introduced via electroporation with sgRNAs generated through in vitro transcription and commercial Cas9. High editing efficiencies are achieved with limited time and financial cost.

Advances in the hematopoietic stem cell (HSCs) field have been aided by methods to genetically engineer primary progenitor cells as well as animal models. ...

Manipulation of Ploidy in Caenorhabditis elegans

Mechanisms that involve whole genome polyploidy play important roles in development and evolution; also, an abnormal generation of tetraploid cells has been associated with both the progression of cancer and the development of drug resistance. Until now, it has not been feasible to easily manipulate the ploidy of a multicellular animal without generating mostly sterile progeny. Presented here is a simple and rapid protocol for generating tetraploid Caenorhabditis elegans animals from any diploid strain. This method allows the user to create a bias in chromosome segregation during meiosis, ultimately increasing ploidy in C. elegans. This strategy relies on the transient reduction of expression of the rec-8 gene to generate diploid gametes. A rec-8 mutant produces diploid gametes that can potentially produce tetraploids upon fertilization. This tractable scheme has been used to generate tetraploid strains carrying mutations and chromosome rearrangements to gain insight into chromosomal dynamics and interactions during pairing and synapsis in meiosis. This method is efficient for generating stable tetraploid strains without genetic markers, can be applied to any diploid strain, and can be used to derive triploid C. elegans. This straightforward method is useful for investigating other fundamental biological questions relevant to genome instability, gene dosage, biological scaling, extracellular signaling, adaptation to stress, development of resistance to drugs, and mechanisms of speciation.

Manipulation of Ploidy in Caenorhabditis elegans

This method allows for the generation of tetraploid and triploid Caenorhabditis nematodes from any diploid strain. Polyploid strains generated by this method have been used to study chromosome interactions in meiotic prophase, and this method is useful for examining important basic questions in cell, developmental, evolutionary, and cancer biology.

Mechanisms that involve whole genome polyploidy play important roles in development and evolution; also, an abnormal generation of tetraploid cells has ...

Preparation and Gene Modification of Nonhuman Primate Hematopoietic Stem and Progenitor Cells

Hematopoietic stem and progenitor cell (HSPC) transplantation has been a cornerstone therapy for leukemia and other cancers for nearly half a century, underlies the only known cure of human immunodeficiency virus (HIV-1) infection, and shows immense promise in the treatment of genetic diseases such as beta thalassemia. Our group has developed a protocol to model HSPC gene therapy in nonhuman primates (NHPs), allowing scientists to optimize many of the same reagents and techniques that are applied in the clinic. Here, we describe methods for purifying CD34+ HSPCs and long-term persisting hematopoietic stem cell (HSC) subsets from primed bone marrow (BM). Identical techniques can be employed for the purification of other HSPC sources (e.g., mobilized peripheral blood stem cells [PBSCs]). Outlined is a 2 day protocol in which cells are purified, cultured, modified with lentivirus (LV), and prepared for infusion back into the autologous host. Key readouts of success include the purity of the CD34+ HSPC population, the ability of purified HSPCs to form morphologically distinct colonies in semisolid media, and, most importantly, gene modification efficiency. The key advantage to HSPC gene therapy is the ability to provide a source of long-lived cells that give rise to all hematopoietic cell types. As such, these methods have been used to model therapies for cancer, genetic diseases, and infectious diseases. In each case, therapeutic efficacy is established by enhancing the function of distinct HSPC progeny, including red blood cells, T cells, B cells, and/or myeloid subsets. The methods to isolate, modify, and prepare HSPC products are directly applicable and translatable to multiple diseases in human patients.

The goal of this protocol is to isolate nonhuman primate CD34+ cells from primed bone marrow, to gene-modify these cells with lentiviral vectors, and to prepare a product for infusion into the autologous host. The total protocol length is approximately 48 h.

Hematopoietic stem and progenitor cell (HSPC) transplantation has been a cornerstone therapy for leukemia and other cancers for nearly half a century, ...

Manipulation of Gene Function in Mexican Cavefish

Cave animals provide a compelling system for investigating the evolutionary mechanisms and genetic bases underlying changes in numerous complex traits, including eye degeneration, albinism, sleep loss, hyperphagia, and sensory processing. Species of cavefish from around the world display a convergent evolution of morphological and behavioral traits due to shared environmental pressures between different cave systems. Diverse cave species have been studied in the laboratory setting. The Mexican tetra, Astyanax mexicanus, with sighted and blind forms, has provided unique insights into biological and molecular processes underlying the evolution of complex traits and is well-poised as an emerging model system. While candidate genes regulating the evolution of diverse biological processes have been identified in A. mexicanus, the ability to validate a role for individual genes has been limited. The application of transgenesis and gene-editing technology has the potential to overcome this significant impediment and to investigate the mechanisms underlying the evolution of complex traits. Here, we describe a different methodology for manipulating gene expression in A. mexicanus. Approaches include the use of morpholinos, Tol2 transgenesis, and gene-editing systems, commonly used in zebrafish and other fish models, to manipulate gene function in A. mexicanus. These protocols include detailed descriptions of timed breeding procedures, the collection of fertilized eggs, injections, and the selection of genetically modified animals. These methodological approaches will allow for the investigation of the genetic and neural mechanisms underlying the evolution of diverse traits in A. mexicanus.&#160;

We describe approaches for the manipulation of genes in the evolutionary model system Astyanax mexicanus. Three different techniques are described: Tol2-mediated transgenesis, targeted manipulation of the genome using CRISPR/Cas9, and knockdown of expression using morpholinos. These tools should facilitate the direct investigation of genes underlying the variation between surface- and cave-dwelling forms.

Cave animals provide a compelling system for investigating the evolutionary mechanisms and genetic bases underlying changes in numerous complex traits, ...

In vivo Application of the REMOTE-control System for the Manipulation of Endogenous Gene Expression

Here we describe a protocol for implementing the REMOTE-control system (Reversible Manipulation of Transcription at Endogenous loci), which allows for reversible and tunable expression control of an endogenous gene of interest in living model systems. The REMOTE-control system employs enhanced lac repression and tet activation systems to achieve down- or upregulation of a target gene within a single biological system. Tight repression can be achieved from repressor binding sites flexibly located far downstream of a transcription start site by inhibiting transcription elongation. Robust upregulation can be attained by enhancing the transcription of an endogenous gene by targeting tet transcriptional activators to the cognate promoter. This reversible and tunable expression control can be applied and withdrawn repeatedly in organisms. The potency and versatility of the system, as demonstrated for endogenous Dnmt1 here, will allow more precise in vivo functional analyses by enabling investigation of gene function at various expression levels and by testing the reversibility of a phenotype.

This protocol outlines the steps needed to generate a model system in which the transcription of an endogenous gene of interest can be conditionally controlled in live animals or cells using enhanced lac repressor and/or tet activator systems.

Here we describe a protocol for implementing the REMOTE-control system (Reversible Manipulation of Transcription at Endogenous loci), which allows for ...