Name: microinjection method for anopheles gambiae embryos
Uploaded: 2021-07-07T13:00:00
Description: Watch this Scientific Journal Video about Microinjection Method for Anopheles gambiae Embryos at JoVE.com

We are grateful to Drusilla Stillinger, Kiona Parker, Parrish Powell and Madeline Nottoli for mosquito husbandry. Funding was provided by the University of California, Irvine Malaria Initiative. AAJ is a Donald Bren Professor at the University of California, Irvine.

1. Preparing mosquitoes for microinjection
<ol>
	<li>Seed a cage13 (~5000 cm3) with ~100 male and 200-300 female 1-2 day adult post-eclosion mosquitoes and allow them to mate for 2 days.</li>
	<li>After the mating period, provide mosquitoes a blood meal using either 2 mL of blood with an artificial feeding device or live anesthetized animals depending on insectary practices14. The following day provide mosquitoes a second blood meal to ensure that all mated fem...

<ol>
	<li>Feramisco, J., Perona, R., Lacal, J. C., Lacal, J. C., Feramisco, J., Perona, R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Needle+Microinjection:+A+Brief+History.">Needle Microinjection: A Brief History.</a> Microinjection. Methods and Tools in Biosciences and Medicine. , (1999).</li><li>Windbichler, N., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+synthetic+homing+endonuclease-based+gene+drive+system+in+the+human+malaria+mosquito.">A synthetic homing endonuclease-based gene drive system in the human malaria mosquito.</a> Nature. 473 (7346), 212-215 (2011).</li><li>Meredith, J. M., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Site-specific+integration+and+expression+of+an+anti-malarial+gene+in+transgenic+Anopheles+gambiae+significantly+reduces+Plasmodium+infections.">Site-specific integration and expression of an anti-malarial gene in transgenic Anopheles gambiae significantly reduces Plasmodium infections.</a> PLoS One. 6 (1), 14587 (2011).</li><li>Hammond, A., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=CRISPR-Cas9+gene+drive+system+targeting+female+reproduction+in+the+malaria+mosquito+vector+Anopheles+gambiae.">CRISPR-Cas9 gene drive system targeting female reproduction in the malaria mosquito vector Anopheles gambiae.</a> Nature Biotechnology. 34 (1), 78-83 (2016).</li><li>Carballar-Lejarazu, R., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Next-generation+gene+drive+for+population+modification+of+the+malaria+vector+mosquito,+Anopheles+gambiae.">Next-generation gene drive for population modification of the malaria vector mosquito, Anopheles gambiae.</a> Proceedings of the National Academy of Sciences of the United States of America. 117 (37), 22805-22814 (2020).</li><li>Sim&#245;es, M. L., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+Anopheles+FBN9+immune+factor+mediates+Plasmodium+species-specific+defense+through+transgenic+fat+body+expression.">The Anopheles FBN9 immune factor mediates Plasmodium species-specific defense through transgenic fat body expression.</a> Develomental &amp; Comparative Immunology. 67, 257-265 (2017).</li><li>Arik, A. J., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Increased+Akt+signaling+in+the+mosquito+fat+body+increases+adult+survivorship.">Increased Akt signaling in the mosquito fat body increases adult survivorship.</a> FASEB Journal. 4, 1404-1413 (2015).</li><li>Riabinina, O., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Organization+of+olfactory+centres+in+the+malaria+mosquito+Anopheles+gambiae.">Organization of olfactory centres in the malaria mosquito Anopheles gambiae.</a> Nature Communications. 7, 13010 (2016).</li><li>Kyrou, K., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+CRISPR-Cas9+gene+drive+targeting+doublesex+causes+complete+population+suppression+in+caged+Anopheles+gambiae+mosquitoes.">A CRISPR-Cas9 gene drive targeting doublesex causes complete population suppression in caged Anopheles gambiae mosquitoes.</a> Nature Biotechnology. 36 (11), 1062-1066 (2018).</li><li>Dong, Y., Sim&#245;es, M. L., Dimopoulos, G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Versatile+transgenic+multistage+effector-gene+combinations+for+Plasmodium+falciparum+suppression+in+Anopheles.">Versatile transgenic multistage effector-gene combinations for Plasmodium falciparum suppression in Anopheles.</a> Science Advances. 6 (20), (2020).</li><li>Grossman, G. L., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Germline+transformation+of+the+malaria+vector,+Anopheles+gambiae,+with+the+piggyBac+transposable+element.">Germline transformation of the malaria vector, Anopheles gambiae, with the piggyBac transposable element.</a> Insect Molecular Biology. 6, 597-604 (2001).</li><li>Benedict, M. Q. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Methods+in+Anopheles+research.+Chapter+3:+Specific+Anopheles+techniques.+3.1+Embryonic+Techniques.+3.1.1+Microinjection+methods+for+Anopheles+Embryos.">Methods in Anopheles research. Chapter 3: Specific Anopheles techniques. 3.1 Embryonic Techniques. 3.1.1 Microinjection methods for Anopheles Embryos.</a> BEI resources. , (2015).</li><li>Pham, T. B., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Experimental+population+modification+of+the+malaria+vector+mosquito,+Anopheles+stephensi.">Experimental population modification of the malaria vector mosquito, Anopheles stephensi.</a> PLoS Genetics. 15 (12), 1008440 (2019).</li><li>Benedict, M. Q., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Pragmatic+selection+of+larval+mosquito+diets+for+insectary+rearing+of+Anopheles+gambiae+and+Aedes+aegypti.">Pragmatic selection of larval mosquito diets for insectary rearing of Anopheles gambiae and Aedes aegypti.</a> PLoS One. 15 (3), 0221838 (2020).</li><li>Carballar-Lejaraz&#250;, R., James, A. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Population+modification+of+Anopheline+species+to+control+malaria+transmission.">Population modification of Anopheline species to control malaria transmission.</a> Pathogens and Global Health. 111 (8), 424-435 (2017).</li></ol>

With the increased availability of precise and flexible genetic engineering technologies such as CRISPR/Cas9, transgenic organisms can be developed in a more straightforward and stable way than previously possible. These tools have allowed researchers to create transgenic strains of mosquito vectors that are very close to achieving the desired properties of either refractoriness to pathogens (population modification) or heritable sterility (population suppression). However, to develop the most safe and stable genetically...

Microinjection techniques have been used to experimentally manipulate organisms since the early 1900s1. Microinjection has been used to study both basic biological functions and/or introduce important changes in the biology of a desired organism. The microinjection technique has been of particular interest to vector biologists and has been widely used to manipulate vector genomes2-11. Transgenesis experiments in arthropod vectors often aim to make vectors less efficient at transmitting pathogens by either enacting changes that decrease a vector&#39;s fitness or increase refractoriness to the pathogens they transmit. Mosquitoes transmit a variety of human pathogens and have a significant impact on morbidity and mortality worldwide. The Anopheles genus of mosquitoes transmits the human malaria parasitic pathogens,&#160;Plasmodium spp.&#160;Genetic engineering experiments with Anopheles have aimed to better understand the biology and reduce the vectorial capacity of these mosquitoes in efforts to develop novel malaria elimination strategies.
The mosquito vectors that contribute the most malaria infections worldwide are in the Anopheles gambiae species complex. However, the majority of successful transgenesis experiments have been performed on the malaria vector of the Indian subcontinent, Anopheles stephensi. While plenty of laboratory-adapted Anopheles gambiae strains exist, the number of transgenic Anopheles gambiae spp. lines reported in the literature does not compare to that of Anopheles stephensi. It is thought that the Anopheles gambiae embryo is more difficult to inject and achieve successful transgenesis than Anopheles stephensi, although the reasons for these differences are unknown. This protocol describes a method that has been proven to be consistently successful in achieving transgenesis of Anopheles gambiae embryos via microinjection. The protocol is based on a method previously developed by Herv&#233;&#160;Bossin and Mark Benedict12 with some additional details and alterations added that have been found to increase the efficiency of transgenesis.

<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr >
			<td >10x Microinjection Buffer</td>
			<td >-</td>
			<td >-</td>
			<td >1 mM NaHPO4 buffer, pH 6.8, 50 mM KCl</td>
		</tr>
		<tr >
			<td >Blotting membrane (Zeta-Probe GT Genomic Tested Blotting Membrane)</td>
			<td >Bio-Rad</td>
			<td ></td>
			<td >Neatly and straightly cut into 2x1 cm piece</td>
		</tr>
		<tr >
			<td >Conical tubes 50 ml (disposable centrifuge tube, polypropylene)</td>
			<td >Fisher Brand</td>
			<td ></td>
			<td >Ends cut</td>
		</tr>
		<tr >
			<td >De-ionized or double-distilled water (ddH20)&#160;</td>
			<td >Mili-Q</td>
			<td ></td>
			<td >In a wash bottle&#160;</td>
		</tr>
		<tr >
			<td >Dissecting microscope&#160;</td>
			<td >Leica&#160;</td>
			<td >Leica MZ12</td>
			<td >For embryo alignment</td>
		</tr>
		<tr >
			<td >Forceps&#160;</td>
			<td ></td>
			<td ></td>
			<td >No. 5 size&#160;</td>
		</tr>
		<tr >
			<td >Glass container&#160;</td>
			<td >Pyrex</td>
			<td >No. 3140</td>
			<td >125 x 65</td>
		</tr>
		<tr >
			<td >Glass slide&#160;</td>
			<td >Fisher Brand</td>
			<td >No. 12-549-3</td>
			<td >75x26 mm</td>
		</tr>
		<tr >
			<td >Incubator</td>
			<td >Barnsted Lab-line</td>
			<td >Model No. 150</td>
			<td >28 &#176;C</td>
		</tr>
		<tr >
			<td >KCl</td>
			<td ></td>
			<td ></td>
			<td >50 mM</td>
		</tr>
		<tr >
			<td >Latex dental film&#160;</td>
			<td >Crosstex International</td>
			<td >No. 19302</td>
			<td ></td>
		</tr>
		<tr >
			<td >Microinjector</td>
			<td >Sutter Instrument</td>
			<td ></td>
			<td >XenoWorks Digital Microinjector</td>
		</tr>
		<tr >
			<td >Microloader Pipette tips&#160;</td>
			<td >Eppendorf&#160;</td>
			<td ></td>
			<td >20 &#181;L microloader epT.I.P.S.</td>
		</tr>
		<tr >
			<td >Micromanipulator</td>
			<td >Sutter Instrument</td>
			<td ></td>
			<td >XenoWorks Micromanipulator</td>
		</tr>
		<tr >
			<td >Micropipette&#160;</td>
			<td >Rainin&#160;</td>
			<td ></td>
			<td >20 &#181;L</td>
		</tr>
		<tr >
			<td >Micropipette puller&#160;</td>
			<td >Sutter Instrument</td>
			<td >Sutter P-2000 micropipette puller</td>
			<td ></td>
		</tr>
		<tr >
			<td >Microscope&#160;</td>
			<td >Leica</td>
			<td >DM 1000 LED or M165 FC</td>
			<td >For microinjection</td>
		</tr>
		<tr >
			<td >Minimum fiber filter paper&#160;</td>
			<td >Fisher Brand</td>
			<td >No. 05-714-4</td>
			<td >Chromatography Paper, Thick&#160;</td>
		</tr>
		<tr >
			<td >Mosquitoes&#160;</td>
			<td >MR4, BEI Resources</td>
			<td ></td>
			<td >Anopheles gambiae, mated adult females, blood-fed 4-5 days post-eclosion</td>
		</tr>
		<tr >
			<td >NaHPO4 buffer&#160;</td>
			<td ></td>
			<td ></td>
			<td >1 mM, ph 6.8</td>
		</tr>
		<tr >
			<td >Nylon mesh</td>
			<td ></td>
			<td ></td>
			<td ></td>
		</tr>
		<tr >
			<td >Paint brush</td>
			<td >Blick</td>
			<td >No. 05831-7040</td>
			<td >Fine, size 4/0</td>
		</tr>
		<tr >
			<td >Petri dish</td>
			<td ></td>
			<td ></td>
			<td >Plastic, (60x15 mm, 90x15 mm)</td>
		</tr>
		<tr >
			<td >Sodium acetate</td>
			<td ></td>
			<td ></td>
			<td >&#160;3M</td>
		</tr>
		<tr >
			<td >Quartz glass capillaries&#160;</td>
			<td >Sutter Instrument</td>
			<td >No. QF100-70-10</td>
			<td >With filament, 1 mm OD,&#160; ID 0.7 10 cm length</td>
		</tr>
		<tr >
			<td >Water PCR grade&#160;</td>
			<td >Roche</td>
			<td >No. 03315843001</td>
			<td ></td>
		</tr>
	</tbody>
</table>

microinjection method for anopheles gambiae embryos

Embryo microinjection techniques are essential for many molecular and genetic studies of insect species. They provide a means to introduce exogenous DNA fragments encoding genes of interest as well as favorable traits into the insect germline in a stable and heritable manner. The resulting transgenic strains can be studied for phenotypic changes resulting from the expression of the integrated DNA to answer basic questions or used in practical applications. Although the technology is straightforward, it requires of the investigator patience and practice to achieve a level of skill that maximizes efficiency. Shown here is a method for microinjection of embryos of the African malaria mosquito, Anopheles gambiae. The objective is to deliver by microinjection exogenous DNA to the embryo so that it can be taken up in the developing germline (pole) cells. Expression from the injected DNA of transposases, integrases, recombinases, or other nucleases (for example CRISPR-associated proteins, Cas) can trigger events that lead to its covalent insertion into chromosomes. Transgenic An. gambiae generated from these technologies have been used for basic studies of immune system components, genes involved in blood-feeding, and elements of the olfactory system. In addition, these techniques have been used to produce An. gambiae strains with traits that may help control the transmission of malaria parasites.

A representative example of the application of the microinjection protocol described can be found in Carballar-Lejaraz&#250;&#160;et al5. The intent here was to insert an autonomous gene-drive system into the germline of a laboratory strain, G3, of An. gambiae. The system was designed to target the cardinal ortholog locus (Agcd) on the third chromosome in this species, which encodes a heme peroxidase that catalyzes the conversion of 3-hydroxykynurenine to xanthommatin, t...

Watch this Scientific Journal Video about Microinjection Method for Anopheles gambiae Embryos at JoVE.com

Microinjection Method for Anopheles gambiae Embryos

Microinjection techniques are essential to introduce exogenous genes into the genomes of mosquitoes. This protocol explains a method used by the James laboratory to microinject DNA constructs into Anopheles gambiae embryos to generate transformed mosquitoes.

Microinjection Method for Anopheles gambiae Embryos

Embryo microinjection techniques are essential for many molecular and genetic studies of insect species. They provide a means to introduce exogenous DNA ...

This protocol is significant because it provides a specific microinjection method for an Anopheles gambiae, which has been historically difficult to transform using common genetic engineering techniques. The main advantage of this technique is that it reliably creates transgenic Anopheles gambiae. The applications of this technique extend toward novel strategies for malaria elimination by facilitating the creation of mosquitoes suitable for population suppression or modification of wild-type Anopheles gambiae populations.This methodology can be adapted easily to different mosquito species. Our microinjection technology take patience and practice. There is a learning curve.To begin, use an aspirator to place 20 to 30 females in a transparent 50-milliliter conical tube. Ensure the tube is cut open at both ends and is covered with latex dental film at one end and nylon mesh and filter paper at the other, where mosquitoes will lay their eggs. Place the mosquito-filled tube in a small Petri dish filled with double-distilled water, then place the tube and dish in an incubator at 28 degrees Celsius for 45 minutes.Remove the tube from the incubator and insert the tube into an empty cage. Gently tap the tube to allow mosquitoes to fly out. Remove the tube from the cage once all the mosquitoes have flown out.When the tube is free of mosquitoes, unscrew the bottom ring, remove the nylon, and use forceps to carefully remove the filter paper with the eggs from the tube. Place the egg-laden filter paper in a plastic Petri dish containing a layer of filter paper moistened with water. Put a membrane on a clean glass slide and use clean forceps to cover the membrane with a piece of filter paper, leaving about one millimeter of the membrane filter uncovered.Wet the filter paper with deionized water, then use the brush to gently transfer 30 to 50 embryos to the edge of the membrane and align the eggs vertically along the membrane. Orient the eggs in the same direction so that when eggs are observed under the microinjection microscope, the posterior end is in a down position and forms an angle of 15 degrees with the needle. Line the entire edge of the membrane with eggs.Use a microloader tip to fill the needles with two microliters of DNA mixture. Insert the needle into the needle holder and connect the automated pressure pump tubing. Align the needle so that it makes an angle of 15 degrees with the slide's plane.Open the needle tip by carefully touching the first egg, then insert the needle's tip to about 10 micrometers in the posterior pole. A successful injection will lead to a small movement of the cytoplasm within the egg. Use the microscope coaxial stage controls to move to the next egg to continue injection.To ensure that the needle tip remains open and has not been clogged, press the Inject button before entering another embryo and visualize the small droplet at the opening of the needle. If the needle gets clogged, press the Clear button to clear the needle and repeat the droplet visualization test. Adjust the pressure as needed if the needle tip opening gets slightly bigger to ensure that the droplet size stays small.Inject about 40 to 50 eggs with one needle. After injections are complete, rinse the eggs off into a glass container lined with filter paper and filled with 50 milliliters of deionized water. Using this protocol, an autonomous gene driven-system was inserted into the germline of a laboratory strain G3 of Anopheles gambiae.The system was designed to target the cardinal ortholog, or Agcd, on the third chromosome in this species. The plasmid pCO37 is shown. It contains Streptococcus pyogenes Cas9 endonuclease under control of the regulatory elements of the nanos gene ortholog.Additionally, it has a guide RNA under the control of a U6 gene promoter and the 3XP3 CFP dominant marker cassette expressing the cyan fluorescent protein. Molecular approaches verified the accurate insertion of about 10 kilo base pairs of DNA, which was designated as AgNosCd-1. Extensive followup analyses showed that AgNosCd-1 was highly efficient at drive, created few resistant alleles, and had no major genetic load due to the integration and expression of the gene drive system.Homozygous gene drive containing mosquitoes were loss-of-function mutants, with larvae, pupae, and newly-emerged adults having a red-eye phenotype. When attempting this protocol, keeping at 88 is crucial for a good hatching to light gray eggs and avoid white eggs.

microinjection-method-for-anopheles-gambiae-embryos

Research

JoVE Journal

Genetics

Laser-assisted Cytoplasmic Microinjection in Livestock Zygotes

Cytoplasmic microinjection into one-cell embryos is a very powerful technique. As an example, it enables the delivery of genome editing tools that can create genetic modifications that will be present in every cell of an adult organism. It can also be used to deliver siRNA, mRNAs or blocking antibodies to study gene function in preimplantation embryos. The conventional technique for microinjecting embryos used in rodents consists of a very thin micropipette that directly penetrates the plasma membrane when advanced into the embryo. When this technique is applied to livestock animals it usually results in low efficiency. This is mainly because in contrast to mice and rats, bovine, ovine, and porcine zygotes have a very dark cytoplasm and a highly elastic plasma membrane that makes visualization during injection and penetration of the plasma membrane hard to achieve. In this protocol, we describe a suitable microinjection method for the delivery of solutions into the cytoplasm of cattle zygotes that has proved to be successful for sheep and pig embryos as well. First, a laser is used to create a hole in the zona pellucida. Then a blunt-end glass micropipette is introduced through the hole and advanced until the tip of the needle reaches about 3/4 into the embryo. Then, the plasma membrane is broken by aspiration of cytoplasmic content inside the needle. Finally, the aspirated cytoplasmic content followed by the solution of interest is injected back into the embryonic cytoplasm. This protocol has been successfully used for the delivery of different solutions into bovine and ovine zygotes with 100% efficiency, minimal lysis, and normal blastocysts development rates.

This protocol shows how to perform cytoplasmic microinjection in farm animal zygotes. This technique can be used to deliver any solution into the one-cell embryo such as genome editing tools to generate knockout animals.

Cytoplasmic microinjection into one-cell embryos is a very powerful technique. As an example, it enables the delivery of genome editing tools that can ...

Microinjection of CRISPR/Cas9 Protein into Channel Catfish, Ictalurus punctatus, Embryos for Gene Editing

The complete genome of the channel catfish, Ictalurus punctatus, has been sequenced, leading to greater opportunities for studying channel catfish gene function. Gene knockout has been used to study these gene functions in vivo. The clustered regularly interspaced short palindromic repeats/CRISPR associated protein 9 (CRISPR/Cas9) system is a powerful tool used to edit genomic DNA sequences to alter gene function. While the traditional approach has been to introduce CRISPR/Cas9 mRNA into the single cell embryos through microinjection, this can be a slow and inefficient process in catfish. Here, a detailed protocol for microinjection of channel catfish embryos with CRISPR/Cas9 protein is described. Briefly, eggs and sperm were collected and then artificial fertilization performed. Fertilized eggs were transferred to a Petri dish containing Holtfreter's solution. Injection volume was calibrated and then guide RNAs/Cas9 targeting the toll/interleukin 1 receptor domain-containing adapter molecule (TICAM 1) gene and rhamnose binding lectin (RBL) gene were microinjected into the yolk of one-cell embryos. The gene knockout was successful as indels were confirmed by DNA sequencing. The predicted protein sequence alterations due to these mutations included frameshift and truncated protein due to premature stop codons.

Microinjection of CRISPR/Cas9 Protein into Channel Catfish, Ictalurus punctatus, Embryos for Gene Editing

A simple and efficient microinjection protocol for gene editing in channel catfish embryos using the CRISPR/Cas9 system is presented. In this protocol, guide RNAs and Cas9 protein were microinjected into the yolk of one-cell embryos. This protocol has been validated by knocking out two channel catfish immune-related genes.

The complete genome of the channel catfish, Ictalurus punctatus, has been sequenced, leading to greater opportunities for studying channel catfish gene ...

High Resolution Fluorescent In Situ Hybridization in Drosophila Embryos and Tissues Using Tyramide Signal Amplification

In our efforts to determine the patterns of expression and subcellular localization of Drosophila RNAs on a genome-wide basis, and in a variety of tissues, we have developed numerous modifications and improvements to our original fluorescent in situ hybridization (FISH) protocol. To facilitate throughput and cost effectiveness, all steps, from probe generation to signal detection, are performed using exon 96-well microtiter plates. Digoxygenin (DIG)-labelled antisense RNA probes are produced using either cDNA clones or genomic DNA as templates. After tissue fixation and permeabilization, probes are hybridized to transcripts of interest and then detected using a succession of anti-DIG antibody conjugated to biotin, streptavidin conjugated to horseradish peroxidase (HRP) and fluorescently conjugated tyramide, which in the presence of HRP, produces a highly reactive intermediate that binds to electron dense regions of immediately adjacent proteins. These amplification and localization steps produce a robust and highly localized signal that facilitates both cellular and subcellular transcript localization. The protocols provided have been optimized to produce highly specific signals in a variety of tissues and developmental stages. References are also provided for additional variations that allow the simultaneous detection of multiple transcripts, or transcripts and proteins, at the same time.

High Resolution Fluorescent In Situ Hybridization in Drosophila Embryos and Tissues Using Tyramide Signal Amplification

The described RNA in situ hybridization protocol allows the detection of RNA in whole Drosophila embryos or dissected tissues. Using 96-well microtiter plates and tyramide signal amplification, transcripts can be detected at high resolution, sensitivity, and throughput, and at a relatively low cost.

In our efforts to determine the patterns of expression and subcellular localization of Drosophila RNAs on a genome-wide basis, and in a variety of ...

Embryo Microinjection and Transplantation Technique for Nasonia vitripennis Genome Manipulation

The jewel wasp Nasonia vitripennis has emerged as an effective model system for the study of processes including sex determination, haplo-diploid sex determination, venom synthesis, and host-symbiont interactions, among others. A major limitation of working with this organism is the lack of effective protocols to perform directed genome modifications. An important part of genome modification is delivery of editing reagents, including CRISPR/Cas9 molecules, into embryos through microinjection. While microinjection is well established in many model organisms, this technique is particularly challenging to perform in N. vitripennis primarily due to its small embryo size, and the fact that embryonic development occurs entirely within a parasitized blowfly pupa. The following procedure overcomes these significant challenges while demonstrating a streamlined, visual procedure for effectively removing wasp embryos from parasitized host pupae, microinjecting them, and carefully transplanting them back into the host for continuation and completion of development. This protocol will strongly enhance the capability of research groups to perform advanced genome modifications in this organism.

Embryo Microinjection and Transplantation Technique for Nasonia vitripennis Genome Manipulation

Microinjection of Nasonia vitripennis embryos is an essential method for generating heritable genome modifications. Described here is a detailed procedure for microinjection and transplantation of Nasonia vitripennis embryos, which will greatly facilitate future genome manipulation in this organism.

The jewel wasp Nasonia vitripennis has emerged as an effective model system for the study of processes including sex determination, haplo-diploid sex ...

Generation of Genome-wide Chromatin Conformation Capture Libraries from Tightly Staged Early Drosophila Embryos

Investigating the three-dimensional architecture of chromatin offers invaluable insight into the mechanisms of gene regulation. Here, we describe a protocol for performing the chromatin conformation capture technique in situ Hi-C on staged Drosophila melanogaster embryo populations. The result is a sequencing library that allows the mapping of all chromatin interactions that occur in the nucleus in a single experiment. Embryo sorting is done manually using a fluorescent stereo microscope and a transgenic fly line containing a nuclear marker. Using this technique, embryo populations from each nuclear division cycle, and with defined cell cycle status, can be obtained with very high purity. The protocol may also be adapted to sort older embryos beyond gastrulation. Sorted embryos are used as inputs for in situ Hi-C. All experiments, including sequencing library preparation, can be completed in five days. The protocol has low input requirements and works reliably using 20 blastoderm stage embryos as input material. The end result is a sequencing library for next generation sequencing. After sequencing, the data can be processed into genome-wide chromatin interaction maps that can be analyzed using a wide range of available tools to gain information about topologically associating domain (TAD) structure, chromatin loops, and chromatin compartments during Drosophila development.

Generation of Genome-wide Chromatin Conformation Capture Libraries from Tightly Staged Early Drosophila Embryos

This work describes a protocol for the generation of high resolution in situ Hi-C libraries from tightly staged pre-gastrulation Drosophila melanogaster embryos.

Investigating the three-dimensional architecture of chromatin offers invaluable insight into the mechanisms of gene regulation. Here, we describe a ...

Use of Freeze-thawed Embryos for High-efficiency Production of Genetically Modified Mice

The use of genetically modified (GM) mice has become crucial for understanding gene function and deciphering the underlying mechanisms of human diseases. The CRISPR/Cas9 system allows researchers to modify the genome with unprecedented efficiency, fidelity, and simplicity. Harnessing this technology, researchers are seeking a rapid, efficient, and easy protocol for generating GM mice. Here we introduce an improved method for cryopreservation of one-cell embryos that leads to a higher developmental rate of the freeze-thawed embryos. By combining it with optimized electroporation conditions, this protocol allows for the generation of knockout and knock-in mice with high efficiency and low mosaic rates within a short time. Furthermore, we show a step-by-step explanation of our optimized protocol, covering CRISPR reagent preparation, in vitro fertilization, cryopreservation and thawing of one-cell embryos, electroporation of CRISPR reagents, mouse generation, and genotyping of the founders. Using this protocol, researchers should be able to prepare GM mice with unparalleled ease, speed, and efficiency.

Here, we present a modified method for cryopreservation of one-cell embryos as well as a protocol that couples the use of freeze-thawed embryos and electroporation for the efficient generation of genetically modified mice.

The use of genetically modified (GM) mice has become crucial for understanding gene function and deciphering the underlying mechanisms of human diseases. ...

Embryo Microinjection Techniques for Efficient Site-Specific Mutagenesis in Culex quinquefasciatus

Culex quinquefasciatus is a vector of a diverse range of vector-borne diseases such as avian malaria, West Nile virus (WNV), Japanese encephalitis, Eastern equine encephalitis, lymphatic filariasis, and Saint Louis encephalitis. Notably, avian malaria has played a major role in the extinction of numerous endemic island bird species, while WNV has become an important vector-borne disease in the United States. To gain further insight into C. quinquefasciatus biology and expand their genetic control toolbox, we need to develop more efficient and affordable methods for genome engineering in this species. However, some biological traits unique to Culex mosquitoes, particularly their egg rafts, have made it difficult to perform microinjection procedures required for genome engineering. To address these challenges, we have developed an optimized embryo microinjection protocol that focuses on mitigating the technical obstacles associated with the unique characteristics of Culex mosquitoes. These procedures demonstrate optimized methods for egg collection, egg raft separation and other handling procedures essential for successful microinjection in C. quinquefasciatus. When coupled with the CRISPR/Cas9 genome editing technology, these procedures allow us to achieve site-specific, efficient and heritable germline mutations, which are required to perform advanced genome engineering and develop genetic control technologies in this important, but currently understudied, disease vector.

Embryo Microinjection Techniques for Efficient Site-Specific Mutagenesis in Culex quinquefasciatus

This protocol describes microinjection procedures for Culex quinquefasciatus embryos that are optimized to work with CRISPR/Cas9 gene editing tools. This technique can efficiently generate site-specific, heritable, germline mutations that can be used for building genetic technologies in this understudied disease vector.

Culex quinquefasciatus is a vector of a diverse range of vector-borne diseases such as avian malaria, West Nile virus (WNV), Japanese encephalitis, ...

Sand Fly (Phlebotomus papatasi) Embryo Microinjection for CRISPR/Cas9 Mutagenesis

Sand flies are the natural vectors for Leishmania species, protozoan parasites producing a broad spectrum of symptoms ranging from cutaneous lesions to visceral pathology. Deciphering the nature of the vector/parasite interactions is of primary importance for better understanding of Leishmania transmission to their hosts. Among the parameters controlling the sand fly vector competence (i.e. their ability to carry and transmit pathogens), parameters intrinsic to these insects were shown to play a key role. Insect immune response, for example, impacts sand fly vector competence to Leishmania. The study of such parameters has been limited by the lack of methods of gene expression modification adapted for use in these non-model organisms. Gene downregulation by small interfering RNA (siRNA) is possible, but in addition to being technically challenging, the silencing leads to only a partial loss of function, which cannot be transmitted from generation to generation. Targeted mutagenesis by CRISPR/Cas9 technology was recently adapted to the Phlebotomus papatasi sand fly. This technique leads to the generation of transmissible mutations in a specifically chosen locus, allowing to study the genes of interest. The CRISPR/Cas9 system relies on the induction of targeted double-strand DNA breaks, later repaired by either Non-Homologous End Joining (NHEJ) or by Homology Driven Repair (HDR). NHEJ consists of a simple closure of the break and frequently leads to small insertion/deletion events. In contrast, HDR uses the presence of a donor DNA molecule sharing homology with the target DNA as a template for repair. Here, we present a sand fly embryo microinjection method for targeted mutagenesis by CRISPR/Cas9 using NHEJ, which is the only genome modification technique adapted to sand fly vectors to date.

Sand Fly Phlebotomus papatasi Embryo Microinjection for CRISPR/Cas9 Mutagenesis

This protocol details the steps of CRISPR/Cas9 targeted mutagenesis in sand flies: embryo collection, injection, insect rearing, and identification as well as selection of mutations of interest.

Sand flies are the natural vectors for Leishmania species, protozoan parasites producing a broad spectrum of symptoms ranging from cutaneous lesions to ...

Using the GAL4-UAS System for Functional Genetics in Anopheles gambiae

The bipartite GAL4-UAS system is a versatile and powerful tool for functional genetic analysis. The essence of the system is to cross transgenic 'driver' lines that express the yeast transcription factor GAL4 in a tissue specific manner, with transgenic 'responder' lines carrying a candidate gene/RNA interference construct whose expression is controlled by Upstream Activation Sequences (UAS) that bind GAL4. In the ensuing progeny, the gene or silencing construct is thus expressed in a prescribed spatiotemporal manner, enabling the resultant phenotypes to be assayed and gene function inferred. The binary system enables flexibility in experimental approaches to screen phenotypes generated by transgene expression in multiple tissue-specific patterns, even if severe fitness costs are induced. We have adapted this system for Anopheles gambiae, the principal malaria vector in Africa.
In this article, we provide some of the common procedures used during GAL4-UAS analysis. We describe the An. gambiae GAL4-UAS lines already generated, as well as the cloning of new responder constructs for upregulation and RNAi knockdown. We specify a step by step guide for sexing of mosquito pupae to establish genetic crosses, that also includes screening progeny to follow inheritance of fluorescent gene markers that tag the driver and responder insertions. We also present a protocol for clearing An. gambiae embryos to study embryonic development. Finally, we introduce potential adaptions of the method to generate driver lines through CRISPR/Cas9 insertion of GAL4 downstream of target genes.

Using the GAL4-UAS System for Functional Genetics in Anopheles gambiae

The bipartite GAL4-UAS system is a versatile tool for modification of gene expression in a controlled spatiotemporal manner which permits functional genetic analysis in Anopheles gambiae. The procedures described for using this system are a semi-standardized cloning strategy, sexing and screening of pupae for fluorescent protein markers and embryo fixation.

The bipartite GAL4-UAS system is a versatile and powerful tool for functional genetic analysis. The essence of the system is to cross transgenic 'driver' ...

Site-Directed &#966;C31-Mediated Integration and Cassette Exchange in Anopheles Vectors of Malaria

Functional genomic analysis and related strategies for genetic control of malaria rely on validated and reproducible methods to accurately modify the genome of Anopheles mosquitoes. Amongst these methods, the &#966;C31 system allows precise and stable site-directed integration of transgenes, or the substitution of integrated transgenic cassettes via recombinase-mediated cassette exchange (RMCE). This method relies on the action of the Streptomyces &#966;C31 bacteriophage integrase to catalyze recombination between two specific attachment sites designated attP (derived from the phage) and attB (derived from the host bacterium). The system uses one or two attP sites that have been integrated previously into the mosquito genome and attB site(s) in the donor template DNA. Here we illustrate how to stably modify the genome of attP-bearing Anopheles docking lines using two plasmids: an attB-tagged donor carrying the integration or exchange template and a helper plasmid encoding the &#966;C31 integrase. We report two representative results of &#966;C31-mediated site-directed modification: the single integration of a transgenic cassette in An. stephensi and RMCE in An. gambiae mosquitoes. &#966;C31-mediated genome manipulation offers the advantage of reproducible transgene expression from validated, fitness neutral genomic sites, allowing comparative qualitative and quantitative analyses of phenotypes. The site-directed nature of the integration also substantially simplifies the validation of the single insertion site and the mating scheme to obtain a stable transgenic line. These and other characteristics make the &#966;C31 system an essential component of the genetic toolkit for the transgenic manipulation of malaria mosquitoes and other insect vectors.

Site-Directed &lt;em&gt;&amp;#966;C31&lt;/em&gt;-Mediated Integration and Cassette Exchange in &lt;em&gt;Anopheles&lt;/em&gt; Vectors of Malaria

The protocol describes how to achieve site-directed modifications in the genome of Anopheles malaria mosquitoes using the &#966;C31 system. Modifications described include both the integration and the exchange of transgenic cassettes in the genome of attP-bearing docking lines.

Functional genomic analysis and related strategies for genetic control of malaria rely on validated and reproducible methods to accurately modify the ...