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Table of Contents

Archive: Issue 176, October 2021

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Behavior(1)
Biochemistry(8)
Bioengineering(4)
Biology(20)
Cancer Research(3)
Developmental Biology(5)
Engineering(1)
Environment(1)
Genetics(1)
Immunology and Infection(7)
Medicine(9)
Neuroscience(18)
<em>Drosophila</em> Passive Avoidance Behavior as a New Paradigm to Study Associative Aversive Learning

Drosophila Passive Avoidance Behavior as a New Paradigm to Study Associative Aversive Learning

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Journal (Behavior)

Shotgun Proteomics Sample Processing Automated by an Open-Source Lab Robot

Shotgun Proteomics Sample Processing Automated by an Open-Source Lab Robot

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Journal (Biochemistry)

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Methods Collections

Quaternary Structure Modeling Through Chemical Cross-Linking Mass Spectrometry: Extending TX-MS Jupyter Reports

Quaternary Structure Modeling Through Chemical Cross-Linking Mass Spectrometry: Extending TX-MS Jupyter Reports

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Journal (Biochemistry)

JUMPn: A Streamlined Application for Protein Co-Expression Clustering and Network Analysis in Proteomics

JUMPn: A Streamlined Application for Protein Co-Expression Clustering and Network Analysis in Proteomics

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Journal (Biochemistry)

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Methods Collections

Immunopeptidomics: Isolation of Mouse and Human MHC Class I- and II-Associated Peptides for Mass Spectrometry Analysis

Immunopeptidomics: Isolation of Mouse and Human MHC Class I- and II-Associated Peptides for Mass Spectrometry Analysis

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Journal (Biochemistry)

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Methods Collections

Evaluating the Effect of Pesticides on the Larvae of the Solitary Bees

Evaluating the Effect of Pesticides on the Larvae of the Solitary Bees

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Journal (Biochemistry)

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Methods Collections

Chemical Modification of the Tryptophan Residue in a Recombinant Ca<sup>2+</sup>-ATPase N-domain for Studying Tryptophan-ANS FRET

Chemical Modification of the Tryptophan Residue in a Recombinant Ca2+-ATPase N-domain for Studying Tryptophan-ANS FRET

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Journal (Biochemistry)

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Methods Collections

Kinetx: A Combined Flow Cytometry Assay and Analysis Software Framework to Quantitatively Measure and Categorize Platelet Activation in Real-time.

Kinetx: A Combined Flow Cytometry Assay and Analysis Software Framework to Quantitatively Measure and Categorize Platelet Activation in Real-time.

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Journal (Biochemistry)

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Methods Collections

Measurement of Glutamate Uptake using Radiolabeled L-[<sup>3</sup>H]-Glutamate in Acute Transverse Slices Obtained from Rodent Resected Hippocampus

Measurement of Glutamate Uptake using Radiolabeled L-[3H]-Glutamate in Acute Transverse Slices Obtained from Rodent Resected Hippocampus

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Journal (Biochemistry)

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Methods Collections

Open-source Toolkit: Benchtop Carbon Fiber Microelectrode Array for Nerve Recording

Open-source Toolkit: Benchtop Carbon Fiber Microelectrode Array for Nerve Recording

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Journal (Bioengineering)

Microfluidic Fabrication of Core-Shell Microcapsules carrying Human Pluripotent Stem Cell Spheroids

Microfluidic Fabrication of Core-Shell Microcapsules carrying Human Pluripotent Stem Cell Spheroids

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Journal (Bioengineering)

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Methods Collections

Labeling of Extracellular Vesicles for Monitoring Migration and Uptake in Cartilage Explants

Labeling of Extracellular Vesicles for Monitoring Migration and Uptake in Cartilage Explants

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Journal (Bioengineering)

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Methods Collections

Simultaneous Brightfield, Fluorescence, and Optical Coherence Tomographic Imaging of Contracting Cardiac Trabeculae <em>Ex Vivo</em>

Simultaneous Brightfield, Fluorescence, and Optical Coherence Tomographic Imaging of Contracting Cardiac Trabeculae Ex Vivo

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Journal (Bioengineering)

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Methods Collections

Rapid, Affordable, and Uncomplicated Production of Bacterial Cell-free Lysate

Rapid, Affordable, and Uncomplicated Production of Bacterial Cell-free Lysate

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Journal (Biology)

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Methods Collections

Assessing Mineral Availability in Fish Feeds using Complementary Methods Demonstrated with the Example of Zinc in Atlantic Salmon

Assessing Mineral Availability in Fish Feeds using Complementary Methods Demonstrated with the Example of Zinc in Atlantic Salmon

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Journal (Biology)

A Contrast of Three Inoculation Techniques used to Determine the Race of Unknown <em>Fusarium oxysporum</em> f.sp. <em>niveum</em> Isolates

A Contrast of Three Inoculation Techniques used to Determine the Race of Unknown Fusarium oxysporum f.sp. niveum Isolates

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Journal (Biology)

Operation of Laboratory Photobioreactors with Online Growth Measurements and Customizable Light Regimes

Operation of Laboratory Photobioreactors with Online Growth Measurements and Customizable Light Regimes

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Journal (Biology)

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Methods Collections

High-Resolution Respirometry to Assess Bioenergetics in Cells and Tissues Using Chamber- and Plate-Based Respirometers

High-Resolution Respirometry to Assess Bioenergetics in Cells and Tissues Using Chamber- and Plate-Based Respirometers

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Journal (Biology)

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Methods Collections

Sample Preparation by 3D-Correlative Focused Ion Beam Milling for High-Resolution Cryo-Electron Tomography

Sample Preparation by 3D-Correlative Focused Ion Beam Milling for High-Resolution Cryo-Electron Tomography

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Journal (Biology)

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Methods Collections

An Improved Time- and Labor- Efficient Protocol for Mouse Primary Hepatocyte Isolation

An Improved Time- and Labor- Efficient Protocol for Mouse Primary Hepatocyte Isolation

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Journal (Biology)

Adult Pig Islet Isolation

Adult Pig Islet Isolation

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Journal (Biology)

Automating Aggregate Quantification in <em>Caenorhabditis elegans</em>

Automating Aggregate Quantification in Caenorhabditis elegans

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Journal (Biology)

Mesoscopic Optical Imaging of Whole Mouse Heart

Mesoscopic Optical Imaging of Whole Mouse Heart

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Journal (Biology)

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Methods Collections

Scalable Isolation and Purification of Extracellular Vesicles from <em>Escherichia coli</em> and Other Bacteria

Scalable Isolation and Purification of Extracellular Vesicles from Escherichia coli and Other Bacteria

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Journal (Biology)

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Methods Collections

Development of a Cell Co-Culture Model to Mimic Cardiac Ischemia/Reperfusion <em>In Vitro</em>

Development of a Cell Co-Culture Model to Mimic Cardiac Ischemia/Reperfusion In Vitro

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Journal (Biology)

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Methods Collections

Monitoring Gut Acidification in the Adult <em>Drosophila</em> Intestine

Monitoring Gut Acidification in the Adult Drosophila Intestine

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Journal (Biology)

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Methods Collections

Preparing and Rearing Axenic Insects with Tissue Cultured Seedlings for Host-Gut Microbiota Interaction Studies of the Leaf Beetle

Preparing and Rearing Axenic Insects with Tissue Cultured Seedlings for Host-Gut Microbiota Interaction Studies of the Leaf Beetle

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Journal (Biology)

Preparation of Multifunctional Silk-Based Microcapsules Loaded with DNA Plasmids Encoding RNA Aptamers and Riboswitches

Preparation of Multifunctional Silk-Based Microcapsules Loaded with DNA Plasmids Encoding RNA Aptamers and Riboswitches

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Journal (Biology)

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Methods Collections

Global Identification of Co-Translational Interaction Networks by Selective Ribosome Profiling

Global Identification of Co-Translational Interaction Networks by Selective Ribosome Profiling

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Journal (Biology)

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Methods Collections

Isolation of Endothelial Cells from the Lumen of Mouse Carotid Arteries for Single-Cell Multi-Omics Experiments

Isolation of Endothelial Cells from the Lumen of Mouse Carotid Arteries for Single-Cell Multi-Omics Experiments

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Journal (Biology)

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Methods Collections

Deep Vascular Imaging in the Eye with Flow-Enhanced Ultrasound

Deep Vascular Imaging in the Eye with Flow-Enhanced Ultrasound

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Journal (Biology)

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Methods Collections

Rating L-DOPA-Induced Dyskinesias in the Unilaterally 6-OHDA-Lesioned Rat Model of Parkinson's Disease

Rating L-DOPA-Induced Dyskinesias in the Unilaterally 6-OHDA-Lesioned Rat Model of Parkinson's Disease

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Journal (Biology)

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Methods Collections

High-throughput, Robust and Highly Time-flexible Method for Surface Sterilization of Arabidopsis Seeds

High-throughput, Robust and Highly Time-flexible Method for Surface Sterilization of Arabidopsis Seeds

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Journal (Biology)

Intratibial Osteosarcoma Cell Injection to Generate Orthotopic Osteosarcoma and Lung Metastasis Mouse Models

Intratibial Osteosarcoma Cell Injection to Generate Orthotopic Osteosarcoma and Lung Metastasis Mouse Models

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Journal (Cancer Research)

Characterization and Functional Prediction of Bacteria in Ovarian Tissues

Characterization and Functional Prediction of Bacteria in Ovarian Tissues

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Journal (Cancer Research)

Isolating Human Peripheral Blood Mononuclear Cells and CD4+ T cells from S&#233;zary Syndrome Patients for Transcriptomic Profiling

Isolating Human Peripheral Blood Mononuclear Cells and CD4+ T cells from Sézary Syndrome Patients for Transcriptomic Profiling

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Journal (Cancer Research)

Rapid Isolation of Single Cells from Mouse and Human Teeth

Rapid Isolation of Single Cells from Mouse and Human Teeth

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Journal (Developmental Biology)

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Methods Collections

<em>Ex Utero</em> Culture of Mouse Embryos from Pregastrulation to Advanced Organogenesis

Ex Utero Culture of Mouse Embryos from Pregastrulation to Advanced Organogenesis

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Journal (Developmental Biology)

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Methods Collections

A Label-free Xenograft Model for Investigating the Behavior of Human Stem Cell Spheroids in Chick Embryos

A Label-free Xenograft Model for Investigating the Behavior of Human Stem Cell Spheroids in Chick Embryos

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Journal (Developmental Biology)

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Methods Collections

An Explant System for Time-Lapse Imaging Studies of Olfactory Circuit Assembly in <em>Drosophila</em>

An Explant System for Time-Lapse Imaging Studies of Olfactory Circuit Assembly in Drosophila

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Journal (Developmental Biology)

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Methods Collections

Isolation of Murine Retinal Endothelial Cells for Next-Generation Sequencing

Isolation of Murine Retinal Endothelial Cells for Next-Generation Sequencing

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Journal (Developmental Biology)

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Methods Collections

UV-Vis Spectroscopic Characterization of Nanomaterials in Aqueous Media

UV-Vis Spectroscopic Characterization of Nanomaterials in Aqueous Media

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Journal (Engineering)

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Methods Collections

Extraction of Cofactor F<sub>420</sub> for Analysis of Polyglutamate Tail Length from Methanogenic Pure Cultures and Environmental Samples

Extraction of Cofactor F420 for Analysis of Polyglutamate Tail Length from Methanogenic Pure Cultures and Environmental Samples

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Journal (Environment)

Use of the Pyrimidine Analog, 5-Iodo-2&prime;-Deoxyuridine (IdU) with Cell Cycle Markers to Establish Cell Cycle Phases in a Mass Cytometry Platform

Use of the Pyrimidine Analog, 5-Iodo-2′-Deoxyuridine (IdU) with Cell Cycle Markers to Establish Cell Cycle Phases in a Mass Cytometry Platform

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Journal (Genetics)

High-throughput Antiviral Assays to Screen for Inhibitors of Zika Virus Replication

High-throughput Antiviral Assays to Screen for Inhibitors of Zika Virus Replication

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Journal (Immunology and Infection)

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Methods Collections

Immunohistochemistry Test for the Lyssavirus Antigen Detection from Formalin-Fixed Tissues

Immunohistochemistry Test for the Lyssavirus Antigen Detection from Formalin-Fixed Tissues

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Journal (Immunology and Infection)

Analysis of HBV-Specific CD4 T-cell Responses and Identification of HLA-DR-Restricted CD4 T-Cell Epitopes Based on a Peptide Matrix

Analysis of HBV-Specific CD4 T-cell Responses and Identification of HLA-DR-Restricted CD4 T-Cell Epitopes Based on a Peptide Matrix

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Journal (Immunology and Infection)

<em>Drosophila melanogaster</em> Larva Injection Protocol

Drosophila melanogaster Larva Injection Protocol

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Journal (Immunology and Infection)

Real-time Monitoring of Mitochondrial Respiration in Cytokine-differentiated Human Primary T Cells

Real-time Monitoring of Mitochondrial Respiration in Cytokine-differentiated Human Primary T Cells

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Journal (Immunology and Infection)

Isolation of Uterine Innate Lymphoid Cells for Analysis by Flow Cytometry

Isolation of Uterine Innate Lymphoid Cells for Analysis by Flow Cytometry

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Journal (Immunology and Infection)

Generating Transgenics and Knockouts in <em>Strongyloides</em> Species by Microinjection

Generating Transgenics and Knockouts in Strongyloides Species by Microinjection

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Journal (Immunology and Infection)

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Methods Collections

Therapy Interventions for Upper Limb Amputees Undergoing Selective Nerve Transfers

Therapy Interventions for Upper Limb Amputees Undergoing Selective Nerve Transfers

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Journal (Medicine)

A Rat Lung Transplantation Model of Warm Ischemia/Reperfusion Injury: Optimizations to Improve Outcomes

A Rat Lung Transplantation Model of Warm Ischemia/Reperfusion Injury: Optimizations to Improve Outcomes

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Journal (Medicine)

Three-Dimensional Finger Motion Tracking during Needling: A Solution for the Kinematic Analysis of Acupuncture Manipulation

Three-Dimensional Finger Motion Tracking during Needling: A Solution for the Kinematic Analysis of Acupuncture Manipulation

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Journal (Medicine)

Collection, Processing, and Storage Consideration for Urinary Biomarker Research

Collection, Processing, and Storage Consideration for Urinary Biomarker Research

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Journal (Medicine)

Real-Time Dynamic Navigation System for the Precise Quad-Zygomatic Implant Placement in a Patient with a Severely Atrophic Maxilla

Real-Time Dynamic Navigation System for the Precise Quad-Zygomatic Implant Placement in a Patient with a Severely Atrophic Maxilla

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Journal (Medicine)

A Simplified Stepwise Approach to Echo Guidance during Percutaneous Mitral Valve Repair

A Simplified Stepwise Approach to Echo Guidance during Percutaneous Mitral Valve Repair

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Journal (Medicine)

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Methods Collections

Synthesis and Characterization of Multi-Modal Phase-Change Porphyrin Droplets

Synthesis and Characterization of Multi-Modal Phase-Change Porphyrin Droplets

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Journal (Medicine)

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Methods Collections

Sample Preparation for Computed Tomography-based Three-dimensional Visualization of Murine Hind-limb Vessels

Sample Preparation for Computed Tomography-based Three-dimensional Visualization of Murine Hind-limb Vessels

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Journal (Medicine)

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Methods Collections

Nerve Ultrasound Protocol to Detect Dysimmune Neuropathies

Nerve Ultrasound Protocol to Detect Dysimmune Neuropathies

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Journal (Medicine)

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Methods Collections

The 6-hydroxydopamine Rat Model of Parkinson's Disease

The 6-hydroxydopamine Rat Model of Parkinson's Disease

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Journal (Neuroscience)

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Methods Collections

Assessment of Sensory Thresholds in Dogs Using Mechanical and Hot Thermal Quantitative Sensory Testing

Assessment of Sensory Thresholds in Dogs Using Mechanical and Hot Thermal Quantitative Sensory Testing

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Journal (Neuroscience)

Analyses of Actin Dynamics, Clutch Coupling and Traction Force for Growth Cone Advance

Analyses of Actin Dynamics, Clutch Coupling and Traction Force for Growth Cone Advance

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Journal (Neuroscience)

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Methods Collections

Combined Mechanical and Enzymatic Dissociation of Mouse Brain Hippocampal Tissue

Combined Mechanical and Enzymatic Dissociation of Mouse Brain Hippocampal Tissue

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Journal (Neuroscience)

Implantation and Control of Wireless, Battery-free Systems for Peripheral Nerve Interfacing

Implantation and Control of Wireless, Battery-free Systems for Peripheral Nerve Interfacing

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Journal (Neuroscience)

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Methods Collections

Live Imaging of the Mitochondrial Glutathione Redox State in Primary Neurons using a Ratiometric Indicator

Live Imaging of the Mitochondrial Glutathione Redox State in Primary Neurons using a Ratiometric Indicator

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Journal (Neuroscience)

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Methods Collections

A Mouse Model of Direct Anastomosis via the Prespinal Route for Crossing Nerve Transfer Surgery

A Mouse Model of Direct Anastomosis via the Prespinal Route for Crossing Nerve Transfer Surgery

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Journal (Neuroscience)

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Methods Collections

Behavioral And Physiological Analysis In A Zebrafish Model Of Epilepsy

Behavioral And Physiological Analysis In A Zebrafish Model Of Epilepsy

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Journal (Neuroscience)

Minimally Invasive Endoscopic Intracerebral Hemorrhage Evacuation

Minimally Invasive Endoscopic Intracerebral Hemorrhage Evacuation

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Journal (Neuroscience)

<em>In Situ</em> Visualization of Axon Growth and Growth Cone Dynamics in Acute <em>Ex Vivo</em> Embryonic Brain Slice Cultures

In Situ Visualization of Axon Growth and Growth Cone Dynamics in Acute Ex Vivo Embryonic Brain Slice Cultures

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Journal (Neuroscience)

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Methods Collections

Induction and Assessment of Levodopa-induced Dyskinesias in a Rat Model of Parkinson's Disease

Induction and Assessment of Levodopa-induced Dyskinesias in a Rat Model of Parkinson's Disease

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Journal (Neuroscience)

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Methods Collections

Stimulating and Analyzing Adult Neurogenesis in the <em>Drosophila</em> Central Brain

Stimulating and Analyzing Adult Neurogenesis in the Drosophila Central Brain

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Journal (Neuroscience)

Stereotaxic Viral Injection and Gradient-Index Lens Implantation for Deep Brain <em>In Vivo</em> Calcium Imaging

Stereotaxic Viral Injection and Gradient-Index Lens Implantation for Deep Brain In Vivo Calcium Imaging

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Journal (Neuroscience)

Cryo-section Dissection of the Adult Subependymal Zone for Accurate and Deep Quantitative Proteome Analysis

Cryo-section Dissection of the Adult Subependymal Zone for Accurate and Deep Quantitative Proteome Analysis

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Journal (Neuroscience)

Free-floating Immunostaining of Mouse Brains

Free-floating Immunostaining of Mouse Brains

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Journal (Neuroscience)

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Methods Collections

Using Optogenetics to Reverse Neuroplasticity and Inhibit Cocaine Seeking in Rats

Using Optogenetics to Reverse Neuroplasticity and Inhibit Cocaine Seeking in Rats

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Journal (Neuroscience)

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Methods Collections

Serial Block-Face Scanning Electron Microscopy (SBEM) for the Study of Dendritic Spines

Serial Block-Face Scanning Electron Microscopy (SBEM) for the Study of Dendritic Spines

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Journal (Neuroscience)

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Methods Collections

Efficient and Scalable Generation of Human Ventral Midbrain Astrocytes from Human-Induced Pluripotent Stem Cells

Efficient and Scalable Generation of Human Ventral Midbrain Astrocytes from Human-Induced Pluripotent Stem Cells

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Journal (Neuroscience)

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Methods Collections

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